Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018780

Experiment: 4-Hydroxybenzoate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoate (C)
4,085,252	+		TX73_018770	0.78	+0.5
4,085,252	+		TX73_018770	0.78	+1.1
4,085,306	+				+1.2
4,085,334	-				+0.2
4,085,357	+				+0.2
4,085,357	+				-0.8
4,085,357	+				-0.5
4,085,357	+				+0.1
4,085,357	+				-0.2
4,085,365	-				+0.0
4,085,469	+				-0.2
4,085,477	+				+0.4
4,085,487	-				-0.1
4,085,518	+		TX73_018775	0.11	-0.8
4,085,539	+		TX73_018775	0.14	-0.1
4,085,547	-		TX73_018775	0.16	-0.2
4,085,594	+		TX73_018775	0.23	-0.6
4,085,602	-		TX73_018775	0.25	-0.3
4,085,607	-		TX73_018775	0.26	-0.4
4,085,617	-		TX73_018775	0.27	+0.1
4,085,673	-		TX73_018775	0.37	+0.3
4,085,678	-		TX73_018775	0.38	-0.6
4,085,712	-		TX73_018775	0.43	-0.7
4,085,804	-		TX73_018775	0.59	-0.3
4,085,804	-		TX73_018775	0.59	-0.6
4,085,832	+		TX73_018775	0.63	+0.0
4,085,841	-		TX73_018775	0.65	-0.6
4,085,868	-		TX73_018775	0.69	+1.1
4,085,906	+		TX73_018775	0.76	-0.5
4,085,928	+		TX73_018775	0.79	-0.3
4,085,935	+		TX73_018775	0.81	-0.5
4,085,952	+		TX73_018775	0.83	+0.8
4,085,975	-		TX73_018775	0.87	-0.3
4,085,984	-		TX73_018775	0.89	-0.2
4,086,029	-				+0.8
4,086,029	-				-1.7
4,086,040	+				-0.7
4,086,040	+				-0.4
4,086,043	-				-0.6
4,086,043	-				-1.0
4,086,045	+				+0.4
4,086,048	-				+0.0
4,086,058	+				+0.2
4,086,132	+				+0.0
4,086,140	-				-0.1
4,086,149	+				+0.2
4,086,160	-				+1.8
4,086,222	-				-0.6
4,086,277	+				-0.0
4,086,289	+				+0.1
4,086,289	+				+0.4
4,086,297	-		TX73_018780	0.11	-0.4
4,086,302	-		TX73_018780	0.11	+0.5
4,086,327	-		TX73_018780	0.14	-0.1
4,086,355	-		TX73_018780	0.17	-1.0
4,086,407	+		TX73_018780	0.22	+0.1
4,086,415	-		TX73_018780	0.23	-0.5
4,086,426	+		TX73_018780	0.24	+0.6
4,086,458	-		TX73_018780	0.28	-0.0
4,086,476	+		TX73_018780	0.30	+0.1
4,086,485	-		TX73_018780	0.31	-0.8
4,086,513	+		TX73_018780	0.34	-0.6
4,086,521	-		TX73_018780	0.35	+1.1
4,086,546	+		TX73_018780	0.37	+0.1
4,086,580	+		TX73_018780	0.41	-0.6
4,086,678	-		TX73_018780	0.52	-0.5
4,086,735	-		TX73_018780	0.58	-0.0
4,086,767	-		TX73_018780	0.61	+0.0
4,086,778	-		TX73_018780	0.62	-0.0
4,086,802	+		TX73_018780	0.65	-0.2
4,086,820	+		TX73_018780	0.67	-1.4
4,086,828	-		TX73_018780	0.68	+0.0
4,086,834	+		TX73_018780	0.68	-1.2
4,086,837	+		TX73_018780	0.69	-0.1
4,086,887	-		TX73_018780	0.74	-0.6
4,086,890	-		TX73_018780	0.74	-0.6
4,086,905	-		TX73_018780	0.76	-0.6
4,086,937	-		TX73_018780	0.79	-0.7
4,086,957	-		TX73_018780	0.82	-0.2
4,086,973	+		TX73_018780	0.83	-0.5
4,086,995	+		TX73_018780	0.86	+0.2
4,087,003	-		TX73_018780	0.86	+0.1
4,087,005	+		TX73_018780	0.87	-0.6
4,087,005	+		TX73_018780	0.87	+0.3
4,087,013	-		TX73_018780	0.88	-1.0
4,087,047	-				-1.2
4,087,082	-				+1.3
4,087,101	-				-1.4
4,087,144	+				+0.1
4,087,203	-				-0.6
4,087,232	+				+0.0
4,087,277	+				-0.2
4,087,285	-				-0.0
4,087,311	+				-0.0
4,087,329	+		TX73_018785	0.13	-1.2
4,087,337	-		TX73_018785	0.15	-0.1
4,087,337	-		TX73_018785	0.15	-0.8
4,087,337	-		TX73_018785	0.15	+0.0
4,087,337	-		TX73_018785	0.15	-0.1
4,087,344	+		TX73_018785	0.17	+0.3
4,087,357	+		TX73_018785	0.20	+0.1
4,087,368	+		TX73_018785	0.23	+0.0
4,087,453	-		TX73_018785	0.45	+0.2
4,087,503	+		TX73_018785	0.58	+0.1
4,087,505	+		TX73_018785	0.58	+0.3
4,087,534	-		TX73_018785	0.66	+0.5
4,087,552	+		TX73_018785	0.70	-1.4
4,087,569	+		TX73_018785	0.75	-0.1
4,087,577	-		TX73_018785	0.77	+0.2
4,087,577	-		TX73_018785	0.77	+0.8
4,087,577	-		TX73_018785	0.77	-0.5
4,087,579	-		TX73_018785	0.77	-0.2
4,087,592	+		TX73_018785	0.81	+0.7
4,087,608	+		TX73_018785	0.85	+0.5
4,087,622	-		TX73_018785	0.88	-0.4
4,087,624	-		TX73_018785	0.89	-0.5
4,087,647	+				-0.2
4,087,683	-				-0.9
4,087,695	+				-0.1
4,087,717	+				-0.3
4,087,720	+				-1.1
4,087,727	+				+0.7
4,087,735	-				-0.1
4,087,770	-				+0.4
4,087,852	-		TX73_018790	0.20	-0.2
4,087,893	+		TX73_018790	0.32	-0.2
4,087,896	-		TX73_018790	0.33	-0.1
4,087,898	+		TX73_018790	0.34	+0.1
4,087,901	-		TX73_018790	0.34	-0.5
4,087,906	-		TX73_018790	0.36	+0.5
4,087,906	-		TX73_018790	0.36	-0.9
4,087,912	-		TX73_018790	0.38	-0.8
4,087,920	+		TX73_018790	0.40	-1.4
4,087,928	-		TX73_018790	0.42	+0.2
4,087,934	-		TX73_018790	0.44	-0.5
4,087,947	-		TX73_018790	0.48	-0.0
4,087,952	-		TX73_018790	0.49	+0.1
4,087,952	-		TX73_018790	0.49	+0.1
4,087,990	+		TX73_018790	0.60	-0.2
4,087,998	-		TX73_018790	0.63	+0.1
4,088,003	+		TX73_018790	0.64	+0.1
4,088,003	+		TX73_018790	0.64	+1.1
4,088,011	-		TX73_018790	0.66	-0.4
4,088,011	-		TX73_018790	0.66	-2.0
4,088,011	-		TX73_018790	0.66	+0.4
4,088,011	-		TX73_018790	0.66	+0.2
4,088,041	+		TX73_018790	0.75	-0.7
4,088,046	+		TX73_018790	0.77	-0.1
4,088,046	+		TX73_018790	0.77	+0.1
4,088,046	+		TX73_018790	0.77	+0.6
4,088,081	+		TX73_018790	0.87	+2.6
4,088,081	+		TX73_018790	0.87	-1.0
4,088,081	+		TX73_018790	0.87	-0.4
4,088,081	+		TX73_018790	0.87	+0.2
4,088,081	+		TX73_018790	0.87	-0.1
4,088,089	-		TX73_018790	0.89	-0.2
4,088,089	-		TX73_018790	0.89	-0.2
4,088,089	-		TX73_018790	0.89	-0.2
4,088,089	-		TX73_018790	0.89	+0.1
4,088,089	-		TX73_018790	0.89	-0.2
4,088,089	-		TX73_018790	0.89	-0.6
4,088,091	+		TX73_018790	0.90	-0.6
4,088,097	+				+1.1
4,088,105	-				-0.9
4,088,105	-				-0.1
4,088,107	-				+0.1
4,088,107	-				+0.3
4,088,114	-				-0.8