Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_007855

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_007835 and TX73_007840 are separated by 77 nucleotidesTX73_007840 and TX73_007845 are separated by 153 nucleotidesTX73_007845 and TX73_007850 are separated by 15 nucleotidesTX73_007850 and TX73_007855 are separated by 131 nucleotidesTX73_007855 and TX73_007860 are separated by 27 nucleotides TX73_007835: TX73_007835 - chlorophyllide a reductase subunit Z, at 1,692,816 to 1,694,264 _007835 TX73_007840: TX73_007840 - hypothetical protein, at 1,694,342 to 1,694,566 _007840 TX73_007845: TX73_007845 - light-harvesting antenna LH1, beta subunit, at 1,694,720 to 1,694,917 _007845 TX73_007850: TX73_007850 - light-harvesting antenna LH1, alpha subunit, at 1,694,933 to 1,695,124 _007850 TX73_007855: TX73_007855 - photosynthetic reaction center subunit L, at 1,695,256 to 1,696,089 _007855 TX73_007860: TX73_007860 - photosynthetic reaction center subunit M, at 1,696,117 to 1,697,040 _007860 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -1 0 1 2at 1694.319 kb on + strandat 1694.319 kb on + strandat 1694.319 kb on + strandat 1694.578 kb on + strandat 1695.203 kb on + strandat 1696.084 kb on + strandat 1697.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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1,694,319 + +0.4
1,694,319 + +0.9
1,694,319 + +1.3
1,694,578 + -0.1
1,695,203 + -0.5
1,696,084 + +2.7
1,697,021 + +1.9

Or see this region's nucleotide sequence