Experiment: 4-Hydroxybenzoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002145 and TX73_002150 are separated by 106 nucleotides TX73_002150 and TX73_002155 are separated by 25 nucleotides TX73_002155 and TX73_002160 are separated by 199 nucleotides TX73_002160 and TX73_002165 are separated by 200 nucleotides
TX73_002145: TX73_002145 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 456,521 to 457,408
_002145
TX73_002150: TX73_002150 - DUF167 domain-containing protein, at 457,515 to 457,841
_002150
TX73_002155: TX73_002155 - YggT family protein, at 457,867 to 458,157
_002155
TX73_002160: TX73_002160 - tRNA-Ala, at 458,357 to 458,432
_002160
TX73_002165: TX73_002165 - enoyl-CoA hydratase, at 458,633 to 459,445
_002165
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 457.389 kb on + strand at 457.409 kb on + strand at 457.415 kb on + strand at 457.416 kb on + strand at 457.420 kb on - strand at 457.423 kb on - strand at 457.424 kb on - strand at 457.425 kb on + strand at 457.431 kb on + strand at 457.433 kb on - strand at 457.433 kb on - strand at 457.433 kb on - strand at 457.453 kb on + strand at 457.476 kb on - strand at 457.489 kb on - strand at 457.533 kb on - strand at 457.535 kb on + strand at 457.535 kb on + strand at 457.543 kb on - strand at 457.543 kb on - strand at 457.543 kb on - strand at 457.545 kb on + strand at 457.545 kb on + strand at 457.550 kb on + strand, within TX73_002150 at 457.555 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.565 kb on + strand, within TX73_002150 at 457.571 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.573 kb on - strand, within TX73_002150 at 457.621 kb on + strand, within TX73_002150 at 457.624 kb on - strand, within TX73_002150 at 457.635 kb on - strand, within TX73_002150 at 457.651 kb on + strand, within TX73_002150 at 457.659 kb on - strand, within TX73_002150 at 457.659 kb on - strand, within TX73_002150 at 457.664 kb on + strand, within TX73_002150 at 457.710 kb on + strand, within TX73_002150 at 457.718 kb on - strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.735 kb on + strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.743 kb on - strand, within TX73_002150 at 457.748 kb on + strand, within TX73_002150 at 457.756 kb on - strand, within TX73_002150 at 457.762 kb on - strand, within TX73_002150 at 457.766 kb on - strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.784 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.802 kb on + strand, within TX73_002150 at 457.809 kb on + strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.810 kb on - strand at 457.814 kb on + strand at 457.822 kb on - strand at 457.822 kb on - strand at 457.824 kb on - strand at 457.830 kb on + strand at 457.839 kb on - strand at 457.866 kb on + strand at 457.866 kb on + strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.888 kb on - strand at 457.895 kb on + strand at 457.895 kb on + strand at 457.914 kb on - strand, within TX73_002155 at 457.916 kb on - strand, within TX73_002155 at 457.921 kb on - strand, within TX73_002155 at 457.926 kb on - strand, within TX73_002155 at 457.927 kb on + strand, within TX73_002155 at 457.935 kb on - strand, within TX73_002155 at 457.935 kb on - strand, within TX73_002155 at 457.947 kb on + strand, within TX73_002155 at 457.948 kb on + strand, within TX73_002155 at 457.974 kb on - strand, within TX73_002155 at 457.974 kb on - strand, within TX73_002155 at 458.018 kb on + strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.028 kb on - strand, within TX73_002155 at 458.051 kb on - strand, within TX73_002155 at 458.061 kb on + strand, within TX73_002155 at 458.080 kb on + strand, within TX73_002155 at 458.084 kb on - strand, within TX73_002155 at 458.088 kb on - strand, within TX73_002155 at 458.088 kb on - strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.110 kb on + strand, within TX73_002155 at 458.118 kb on + strand, within TX73_002155 at 458.136 kb on - strand at 458.148 kb on - strand at 458.200 kb on - strand at 458.206 kb on + strand at 458.217 kb on - strand at 458.219 kb on - strand at 458.219 kb on - strand at 458.219 kb on - strand at 458.220 kb on + strand at 458.228 kb on - strand at 458.254 kb on - strand at 458.265 kb on + strand at 458.273 kb on - strand at 458.273 kb on - strand at 458.275 kb on + strand at 458.277 kb on + strand at 458.283 kb on - strand at 458.284 kb on + strand at 458.284 kb on + strand at 458.284 kb on + strand at 458.292 kb on - strand at 458.448 kb on + strand at 458.456 kb on - strand at 458.484 kb on - strand at 458.484 kb on - strand at 458.518 kb on + strand at 458.523 kb on + strand at 458.523 kb on + strand at 458.523 kb on + strand at 458.528 kb on + strand at 458.531 kb on - strand at 458.531 kb on - strand at 458.531 kb on - strand at 458.536 kb on + strand at 458.536 kb on + strand at 458.536 kb on - strand at 458.541 kb on - strand at 458.583 kb on + strand at 458.612 kb on + strand at 458.626 kb on - strand at 458.626 kb on - strand at 458.626 kb on - strand at 458.626 kb on - strand at 458.626 kb on - strand at 458.640 kb on + strand at 458.648 kb on - strand at 458.648 kb on - strand at 458.685 kb on + strand at 458.686 kb on + strand at 458.686 kb on + strand at 458.687 kb on + strand at 458.693 kb on - strand at 458.693 kb on - strand at 458.694 kb on - strand at 458.705 kb on - strand at 458.738 kb on + strand, within TX73_002165 at 458.754 kb on + strand, within TX73_002165 at 458.769 kb on + strand, within TX73_002165 at 458.769 kb on + strand, within TX73_002165 at 458.777 kb on - strand, within TX73_002165 at 458.777 kb on - strand, within TX73_002165 at 458.777 kb on - strand, within TX73_002165 at 458.777 kb on - strand, within TX73_002165 at 458.782 kb on - strand, within TX73_002165 at 458.784 kb on - strand, within TX73_002165 at 458.799 kb on - strand, within TX73_002165 at 458.837 kb on + strand, within TX73_002165 at 458.838 kb on + strand, within TX73_002165 at 458.845 kb on - strand, within TX73_002165 at 458.846 kb on - strand, within TX73_002165 at 458.846 kb on - strand, within TX73_002165 at 458.855 kb on + strand, within TX73_002165 at 458.865 kb on + strand, within TX73_002165 at 458.865 kb on + strand, within TX73_002165 at 458.868 kb on + strand, within TX73_002165 at 458.885 kb on - strand, within TX73_002165 at 458.887 kb on + strand, within TX73_002165 at 458.887 kb on + strand, within TX73_002165 at 458.887 kb on + strand, within TX73_002165 at 458.889 kb on + strand, within TX73_002165 at 458.895 kb on - strand, within TX73_002165 at 458.895 kb on - strand, within TX73_002165 at 458.895 kb on - strand, within TX73_002165 at 458.934 kb on + strand, within TX73_002165 at 458.940 kb on - strand, within TX73_002165 at 458.940 kb on - strand, within TX73_002165 at 458.946 kb on + strand, within TX73_002165 at 458.976 kb on + strand, within TX73_002165 at 458.984 kb on - strand, within TX73_002165 at 458.990 kb on - strand, within TX73_002165 at 458.995 kb on - strand, within TX73_002165 at 459.021 kb on - strand, within TX73_002165 at 459.024 kb on + strand, within TX73_002165 at 459.032 kb on - strand, within TX73_002165 at 459.032 kb on - strand, within TX73_002165 at 459.032 kb on - strand, within TX73_002165 at 459.034 kb on + strand, within TX73_002165 at 459.042 kb on - strand, within TX73_002165 at 459.042 kb on - strand, within TX73_002165 at 459.042 kb on - strand, within TX73_002165 at 459.060 kb on + strand, within TX73_002165 at 459.068 kb on - strand, within TX73_002165 at 459.068 kb on - strand, within TX73_002165 at 459.068 kb on - strand, within TX73_002165 at 459.085 kb on - strand, within TX73_002165 at 459.094 kb on + strand, within TX73_002165 at 459.094 kb on + strand, within TX73_002165 at 459.102 kb on + strand, within TX73_002165 at 459.110 kb on - strand, within TX73_002165 at 459.145 kb on + strand, within TX73_002165
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C) remove 457,389 + +0.1 457,409 + -0.3 457,415 + +0.6 457,416 + -0.1 457,420 - -1.0 457,423 - -0.0 457,424 - +0.5 457,425 + +0.3 457,431 + -1.5 457,433 - -0.3 457,433 - -1.2 457,433 - -0.2 457,453 + -0.3 457,476 - -0.5 457,489 - +0.1 457,533 - -0.4 457,535 + +1.0 457,535 + +0.3 457,543 - +0.4 457,543 - -0.2 457,543 - +0.1 457,545 + +0.1 457,545 + -0.1 457,550 + TX73_002150 0.11 +0.6 457,555 + TX73_002150 0.12 -0.2 457,565 + TX73_002150 0.15 -0.3 457,565 + TX73_002150 0.15 +1.4 457,565 + TX73_002150 0.15 -0.1 457,565 + TX73_002150 0.15 -0.6 457,571 - TX73_002150 0.17 -0.9 457,573 - TX73_002150 0.18 +0.7 457,573 - TX73_002150 0.18 -0.2 457,573 - TX73_002150 0.18 +0.2 457,621 + TX73_002150 0.32 +0.2 457,624 - TX73_002150 0.33 -0.2 457,635 - TX73_002150 0.37 +0.6 457,651 + TX73_002150 0.42 +0.3 457,659 - TX73_002150 0.44 +0.9 457,659 - TX73_002150 0.44 -0.5 457,664 + TX73_002150 0.46 +0.7 457,710 + TX73_002150 0.60 -0.4 457,718 - TX73_002150 0.62 +0.3 457,735 + TX73_002150 0.67 +0.7 457,735 + TX73_002150 0.67 +0.5 457,735 + TX73_002150 0.67 +0.4 457,743 - TX73_002150 0.70 +0.3 457,743 - TX73_002150 0.70 -0.0 457,743 - TX73_002150 0.70 +0.2 457,748 + TX73_002150 0.71 -1.9 457,756 - TX73_002150 0.74 -0.7 457,762 - TX73_002150 0.76 +1.1 457,766 - TX73_002150 0.77 +0.2 457,784 + TX73_002150 0.82 -0.8 457,784 + TX73_002150 0.82 +0.0 457,784 + TX73_002150 0.82 -0.5 457,802 + TX73_002150 0.88 +0.0 457,802 + TX73_002150 0.88 -1.1 457,802 + TX73_002150 0.88 -0.4 457,809 + -0.5 457,810 - -0.6 457,810 - -1.9 457,810 - -2.0 457,810 - +0.1 457,814 + +0.2 457,822 - +2.0 457,822 - -0.0 457,824 - -0.1 457,830 + -0.2 457,839 - +0.2 457,866 + +0.1 457,866 + +0.1 457,873 - +0.2 457,873 - -0.3 457,873 - -0.9 457,873 - +0.1 457,873 - -0.3 457,873 - +0.0 457,888 - -0.9 457,895 + -1.0 457,895 + +3.0 457,914 - TX73_002155 0.16 +0.4 457,916 - TX73_002155 0.17 -0.0 457,921 - TX73_002155 0.19 +0.5 457,926 - TX73_002155 0.20 -0.6 457,927 + TX73_002155 0.21 -1.7 457,935 - TX73_002155 0.23 -1.6 457,935 - TX73_002155 0.23 -2.0 457,947 + TX73_002155 0.27 -1.2 457,948 + TX73_002155 0.28 +0.7 457,974 - TX73_002155 0.37 -1.8 457,974 - TX73_002155 0.37 -1.2 458,018 + TX73_002155 0.52 -0.8 458,028 - TX73_002155 0.55 -0.5 458,028 - TX73_002155 0.55 -0.5 458,028 - TX73_002155 0.55 +0.2 458,051 - TX73_002155 0.63 -1.5 458,061 + TX73_002155 0.67 +0.2 458,080 + TX73_002155 0.73 +2.0 458,084 - TX73_002155 0.75 -0.6 458,088 - TX73_002155 0.76 -1.5 458,088 - TX73_002155 0.76 -1.0 458,110 + TX73_002155 0.84 -1.8 458,110 + TX73_002155 0.84 -0.2 458,110 + TX73_002155 0.84 -0.6 458,118 + TX73_002155 0.86 +0.5 458,136 - -0.9 458,148 - +0.1 458,200 - -1.3 458,206 + -0.9 458,217 - -1.2 458,219 - -1.1 458,219 - -1.1 458,219 - -0.5 458,220 + +1.3 458,228 - +0.1 458,254 - -1.5 458,265 + +0.9 458,273 - +0.2 458,273 - +0.1 458,275 + +0.2 458,277 + +0.5 458,283 - +0.3 458,284 + +0.4 458,284 + -0.1 458,284 + -0.1 458,292 - -0.9 458,448 + +0.5 458,456 - -1.2 458,484 - -1.4 458,484 - +0.2 458,518 + +0.0 458,523 + -1.0 458,523 + +0.2 458,523 + +0.1 458,528 + +2.7 458,531 - +0.7 458,531 - -0.6 458,531 - +0.3 458,536 + -0.0 458,536 + +1.0 458,536 - +0.0 458,541 - -0.1 458,583 + +0.1 458,612 + +0.2 458,626 - -0.5 458,626 - -1.9 458,626 - -0.1 458,626 - -0.6 458,626 - -0.4 458,640 + +0.4 458,648 - -0.3 458,648 - -0.5 458,685 + +1.0 458,686 + -0.3 458,686 + +0.4 458,687 + -0.2 458,693 - +0.3 458,693 - +0.0 458,694 - +0.4 458,705 - +0.4 458,738 + TX73_002165 0.13 -0.4 458,754 + TX73_002165 0.15 -1.0 458,769 + TX73_002165 0.17 -0.0 458,769 + TX73_002165 0.17 -0.3 458,777 - TX73_002165 0.18 +0.8 458,777 - TX73_002165 0.18 -0.3 458,777 - TX73_002165 0.18 -1.6 458,777 - TX73_002165 0.18 +0.7 458,782 - TX73_002165 0.18 +0.2 458,784 - TX73_002165 0.19 -0.1 458,799 - TX73_002165 0.20 +0.4 458,837 + TX73_002165 0.25 +1.0 458,838 + TX73_002165 0.25 +1.5 458,845 - TX73_002165 0.26 -0.0 458,846 - TX73_002165 0.26 +0.7 458,846 - TX73_002165 0.26 +0.5 458,855 + TX73_002165 0.27 -0.2 458,865 + TX73_002165 0.29 -0.3 458,865 + TX73_002165 0.29 +0.3 458,868 + TX73_002165 0.29 -0.4 458,885 - TX73_002165 0.31 -0.6 458,887 + TX73_002165 0.31 +0.3 458,887 + TX73_002165 0.31 -0.3 458,887 + TX73_002165 0.31 -0.2 458,889 + TX73_002165 0.31 +0.4 458,895 - TX73_002165 0.32 -0.1 458,895 - TX73_002165 0.32 -0.0 458,895 - TX73_002165 0.32 -0.3 458,934 + TX73_002165 0.37 +0.4 458,940 - TX73_002165 0.38 +0.1 458,940 - TX73_002165 0.38 +0.4 458,946 + TX73_002165 0.38 -0.6 458,976 + TX73_002165 0.42 +0.0 458,984 - TX73_002165 0.43 +0.3 458,990 - TX73_002165 0.44 +0.8 458,995 - TX73_002165 0.45 +0.5 459,021 - TX73_002165 0.48 +0.1 459,024 + TX73_002165 0.48 +0.8 459,032 - TX73_002165 0.49 +0.3 459,032 - TX73_002165 0.49 +0.5 459,032 - TX73_002165 0.49 +0.5 459,034 + TX73_002165 0.49 -0.2 459,042 - TX73_002165 0.50 +0.6 459,042 - TX73_002165 0.50 +0.1 459,042 - TX73_002165 0.50 +0.4 459,060 + TX73_002165 0.53 +0.2 459,068 - TX73_002165 0.54 -0.4 459,068 - TX73_002165 0.54 +0.7 459,068 - TX73_002165 0.54 -0.2 459,085 - TX73_002165 0.56 +0.2 459,094 + TX73_002165 0.57 +0.3 459,094 + TX73_002165 0.57 +0.6 459,102 + TX73_002165 0.58 -0.2 459,110 - TX73_002165 0.59 -0.6 459,145 + TX73_002165 0.63 -0.1
Or see this region's nucleotide sequence