Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08080

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08085 and HMPREF1058_RS08080 are separated by 20 nucleotidesHMPREF1058_RS08080 and HMPREF1058_RS08075 are separated by 121 nucleotides HMPREF1058_RS08085: HMPREF1058_RS08085 - redoxin domain-containing protein, at 56,513 to 57,703 _RS08085 HMPREF1058_RS08080: HMPREF1058_RS08080 - TlpA family protein disulfide reductase, at 57,724 to 59,832 _RS08080 HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727 _RS08075 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 56.741 kb on - strand, within HMPREF1058_RS08085at 56.915 kb on + strand, within HMPREF1058_RS08085at 56.920 kb on + strand, within HMPREF1058_RS08085at 56.956 kb on + strand, within HMPREF1058_RS08085at 56.978 kb on + strand, within HMPREF1058_RS08085at 56.987 kb on - strand, within HMPREF1058_RS08085at 57.146 kb on + strand, within HMPREF1058_RS08085at 57.146 kb on + strand, within HMPREF1058_RS08085at 57.146 kb on + strand, within HMPREF1058_RS08085at 57.147 kb on - strand, within HMPREF1058_RS08085at 57.148 kb on + strand, within HMPREF1058_RS08085at 57.201 kb on - strand, within HMPREF1058_RS08085at 57.235 kb on - strand, within HMPREF1058_RS08085at 57.318 kb on - strand, within HMPREF1058_RS08085at 57.355 kb on - strand, within HMPREF1058_RS08085at 57.355 kb on - strand, within HMPREF1058_RS08085at 57.375 kb on + strand, within HMPREF1058_RS08085at 57.408 kb on - strand, within HMPREF1058_RS08085at 57.539 kb on + strand, within HMPREF1058_RS08085at 57.629 kb on - strandat 57.819 kb on + strandat 57.828 kb on + strandat 57.829 kb on - strandat 57.921 kb on + strandat 57.985 kb on - strand, within HMPREF1058_RS08080at 58.039 kb on - strand, within HMPREF1058_RS08080at 58.251 kb on - strand, within HMPREF1058_RS08080at 58.268 kb on - strand, within HMPREF1058_RS08080at 58.323 kb on + strand, within HMPREF1058_RS08080at 58.601 kb on + strand, within HMPREF1058_RS08080at 58.601 kb on + strand, within HMPREF1058_RS08080at 58.602 kb on - strand, within HMPREF1058_RS08080at 58.602 kb on - strand, within HMPREF1058_RS08080at 58.634 kb on + strand, within HMPREF1058_RS08080at 58.635 kb on - strand, within HMPREF1058_RS08080at 58.637 kb on - strand, within HMPREF1058_RS08080at 58.638 kb on + strand, within HMPREF1058_RS08080at 58.638 kb on + strand, within HMPREF1058_RS08080at 58.638 kb on + strand, within HMPREF1058_RS08080at 58.642 kb on - strand, within HMPREF1058_RS08080at 58.642 kb on - strand, within HMPREF1058_RS08080at 58.808 kb on - strand, within HMPREF1058_RS08080at 58.808 kb on - strand, within HMPREF1058_RS08080at 58.813 kb on + strand, within HMPREF1058_RS08080at 58.913 kb on + strand, within HMPREF1058_RS08080at 58.913 kb on + strand, within HMPREF1058_RS08080at 58.914 kb on - strand, within HMPREF1058_RS08080at 59.011 kb on - strand, within HMPREF1058_RS08080at 59.012 kb on + strand, within HMPREF1058_RS08080at 59.013 kb on - strand, within HMPREF1058_RS08080at 59.064 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.173 kb on - strand, within HMPREF1058_RS08080at 59.205 kb on - strand, within HMPREF1058_RS08080at 59.301 kb on - strand, within HMPREF1058_RS08080at 59.301 kb on - strand, within HMPREF1058_RS08080at 59.414 kb on - strand, within HMPREF1058_RS08080at 59.589 kb on - strand, within HMPREF1058_RS08080at 59.692 kb on + strandat 59.715 kb on - strandat 59.715 kb on - strandat 59.734 kb on - strandat 59.885 kb on + strandat 59.914 kb on + strandat 59.914 kb on + strandat 59.914 kb on + strandat 59.916 kb on + strandat 59.923 kb on - strandat 59.936 kb on + strandat 60.068 kb on + strand, within HMPREF1058_RS08075at 60.142 kb on + strand, within HMPREF1058_RS08075at 60.143 kb on - strand, within HMPREF1058_RS08075at 60.144 kb on + strand, within HMPREF1058_RS08075at 60.164 kb on - strand, within HMPREF1058_RS08075at 60.248 kb on - strand, within HMPREF1058_RS08075at 60.248 kb on - strand, within HMPREF1058_RS08075at 60.347 kb on - strand, within HMPREF1058_RS08075at 60.430 kb on + strand, within HMPREF1058_RS08075at 60.430 kb on + strand, within HMPREF1058_RS08075at 60.499 kb on - strand, within HMPREF1058_RS08075at 60.499 kb on - strand, within HMPREF1058_RS08075at 60.678 kb on + strandat 60.678 kb on + strandat 60.682 kb on - strandat 60.744 kb on - strandat 60.767 kb on - strandat 60.795 kb on - strandat 60.798 kb on - strandat 60.827 kb on + strandat 60.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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56,741 - HMPREF1058_RS08085 0.19 +0.1
56,915 + HMPREF1058_RS08085 0.34 +2.1
56,920 + HMPREF1058_RS08085 0.34 -2.1
56,956 + HMPREF1058_RS08085 0.37 -0.1
56,978 + HMPREF1058_RS08085 0.39 -0.9
56,987 - HMPREF1058_RS08085 0.40 -1.5
57,146 + HMPREF1058_RS08085 0.53 -0.1
57,146 + HMPREF1058_RS08085 0.53 -1.0
57,146 + HMPREF1058_RS08085 0.53 -2.2
57,147 - HMPREF1058_RS08085 0.53 -0.3
57,148 + HMPREF1058_RS08085 0.53 -0.4
57,201 - HMPREF1058_RS08085 0.58 +0.5
57,235 - HMPREF1058_RS08085 0.61 -0.4
57,318 - HMPREF1058_RS08085 0.68 -1.7
57,355 - HMPREF1058_RS08085 0.71 -0.8
57,355 - HMPREF1058_RS08085 0.71 +0.6
57,375 + HMPREF1058_RS08085 0.72 -1.2
57,408 - HMPREF1058_RS08085 0.75 -0.8
57,539 + HMPREF1058_RS08085 0.86 -1.4
57,629 - -0.8
57,819 + +0.8
57,828 + +0.0
57,829 - -0.2
57,921 + -0.7
57,985 - HMPREF1058_RS08080 0.12 -0.1
58,039 - HMPREF1058_RS08080 0.15 +0.2
58,251 - HMPREF1058_RS08080 0.25 +2.7
58,268 - HMPREF1058_RS08080 0.26 -1.1
58,323 + HMPREF1058_RS08080 0.28 -1.3
58,601 + HMPREF1058_RS08080 0.42 -2.1
58,601 + HMPREF1058_RS08080 0.42 +0.1
58,602 - HMPREF1058_RS08080 0.42 +1.5
58,602 - HMPREF1058_RS08080 0.42 +0.2
58,634 + HMPREF1058_RS08080 0.43 +1.0
58,635 - HMPREF1058_RS08080 0.43 -0.6
58,637 - HMPREF1058_RS08080 0.43 +0.1
58,638 + HMPREF1058_RS08080 0.43 -0.0
58,638 + HMPREF1058_RS08080 0.43 -0.8
58,638 + HMPREF1058_RS08080 0.43 +0.0
58,642 - HMPREF1058_RS08080 0.44 -1.9
58,642 - HMPREF1058_RS08080 0.44 +0.1
58,808 - HMPREF1058_RS08080 0.51 +0.5
58,808 - HMPREF1058_RS08080 0.51 +1.8
58,813 + HMPREF1058_RS08080 0.52 -0.8
58,913 + HMPREF1058_RS08080 0.56 +1.0
58,913 + HMPREF1058_RS08080 0.56 +0.4
58,914 - HMPREF1058_RS08080 0.56 -0.6
59,011 - HMPREF1058_RS08080 0.61 -1.5
59,012 + HMPREF1058_RS08080 0.61 -0.2
59,013 - HMPREF1058_RS08080 0.61 +0.9
59,064 - HMPREF1058_RS08080 0.64 +0.1
59,173 - HMPREF1058_RS08080 0.69 -2.2
59,173 - HMPREF1058_RS08080 0.69 +1.6
59,173 - HMPREF1058_RS08080 0.69 -0.2
59,205 - HMPREF1058_RS08080 0.70 -0.8
59,301 - HMPREF1058_RS08080 0.75 +0.4
59,301 - HMPREF1058_RS08080 0.75 -0.5
59,414 - HMPREF1058_RS08080 0.80 +1.4
59,589 - HMPREF1058_RS08080 0.88 +0.3
59,692 + +0.8
59,715 - +0.4
59,715 - -1.0
59,734 - +1.0
59,885 + +1.3
59,914 + -0.9
59,914 + +0.7
59,914 + +1.3
59,916 + +0.0
59,923 - +0.2
59,936 + -0.1
60,068 + HMPREF1058_RS08075 0.15 -0.6
60,142 + HMPREF1058_RS08075 0.24 +0.3
60,143 - HMPREF1058_RS08075 0.24 +2.8
60,144 + HMPREF1058_RS08075 0.25 -0.9
60,164 - HMPREF1058_RS08075 0.27 +0.0
60,248 - HMPREF1058_RS08075 0.38 +0.9
60,248 - HMPREF1058_RS08075 0.38 -0.4
60,347 - HMPREF1058_RS08075 0.51 +1.7
60,430 + HMPREF1058_RS08075 0.61 -0.2
60,430 + HMPREF1058_RS08075 0.61 -0.1
60,499 - HMPREF1058_RS08075 0.70 -1.5
60,499 - HMPREF1058_RS08075 0.70 +4.2
60,678 + -0.4
60,678 + +1.1
60,682 - -0.1
60,744 - -0.2
60,767 - -1.8
60,795 - +1.1
60,798 - +0.1
60,827 + +0.8
60,829 + -1.9

Or see this region's nucleotide sequence