Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_009115

Experiment: 4-Hydroxybenzoate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoate (C)
1,983,741	+				+0.9
1,983,817	-				+0.3
1,983,822	-				-1.4
1,983,855	+				-0.1
1,983,863	-				-0.1
1,983,863	-				+0.1
1,983,908	+				-0.1
1,983,912	+				+0.1
1,983,916	-				+0.4
1,983,916	-				-0.5
1,983,920	-		TX73_009110	0.10	+0.0
1,983,928	-		TX73_009110	0.11	+0.3
1,983,943	+		TX73_009110	0.13	+0.2
1,983,951	-		TX73_009110	0.14	+0.4
1,983,951	-		TX73_009110	0.14	-0.5
1,983,981	+		TX73_009110	0.18	+0.3
1,983,989	-		TX73_009110	0.19	-0.5
1,984,033	-		TX73_009110	0.25	-0.4
1,984,033	-		TX73_009110	0.25	+0.8
1,984,035	+		TX73_009110	0.25	+0.4
1,984,035	+		TX73_009110	0.25	+0.2
1,984,035	+		TX73_009110	0.25	-0.0
1,984,035	+		TX73_009110	0.25	+0.1
1,984,035	+		TX73_009110	0.25	-0.4
1,984,043	-		TX73_009110	0.26	-0.1
1,984,043	-		TX73_009110	0.26	+0.5
1,984,043	-		TX73_009110	0.26	-0.2
1,984,096	-		TX73_009110	0.33	+0.3
1,984,098	-		TX73_009110	0.33	-0.3
1,984,113	-		TX73_009110	0.35	-0.5
1,984,128	-		TX73_009110	0.37	+0.1
1,984,155	-		TX73_009110	0.40	-0.2
1,984,175	+		TX73_009110	0.43	-0.3
1,984,194	-		TX73_009110	0.45	-0.2
1,984,211	+		TX73_009110	0.48	+0.0
1,984,214	-		TX73_009110	0.48	-1.1
1,984,219	-		TX73_009110	0.49	-0.2
1,984,219	-		TX73_009110	0.49	-0.2
1,984,243	+		TX73_009110	0.52	-0.9
1,984,248	+		TX73_009110	0.52	+0.6
1,984,256	-		TX73_009110	0.53	+1.0
1,984,266	+		TX73_009110	0.55	+0.6
1,984,274	+		TX73_009110	0.56	+0.1
1,984,365	-		TX73_009110	0.67	+0.3
1,984,388	-		TX73_009110	0.70	-0.1
1,984,447	+		TX73_009110	0.78	-0.4
1,984,448	-		TX73_009110	0.78	+0.5
1,984,516	+		TX73_009110	0.86	-0.1
1,984,522	+		TX73_009110	0.87	-0.3
1,984,591	-				-0.5
1,984,652	+				-0.1
1,984,684	-				-0.1
1,984,706	+				-0.5
1,984,706	+				-0.1
1,984,706	+				-0.2
1,984,714	-				-1.7
1,984,714	-				+0.3
1,984,716	+				+0.6
1,984,719	+				-0.2
1,984,755	-				-1.1
1,984,755	-				-0.5
1,984,760	-				-0.2
1,984,806	-				+0.3
1,984,816	-				+1.0
1,984,816	-				-0.3
1,984,821	+				-0.8
1,984,824	-				-0.7
1,984,849	-				-1.3
1,984,874	-				-0.3
1,984,899	+				+0.5
1,984,904	+				+0.2
1,984,931	+				-1.0
1,984,937	-				-1.1
1,984,937	-				-1.7
1,984,939	-				-0.8
1,984,939	-				-2.1
1,985,059	-		TX73_009115	0.12	-0.8
1,985,079	-		TX73_009115	0.13	+0.4
1,985,116	+		TX73_009115	0.14	-1.1
1,985,121	+		TX73_009115	0.14	-0.8
1,985,194	+		TX73_009115	0.17	-0.8
1,985,194	+		TX73_009115	0.17	-0.9
1,985,194	+		TX73_009115	0.17	-0.1
1,985,197	-		TX73_009115	0.17	-0.8
1,985,199	+		TX73_009115	0.17	-0.3
1,985,202	-		TX73_009115	0.17	-0.7
1,985,228	+		TX73_009115	0.18	-1.1
1,985,248	+		TX73_009115	0.19	-0.6
1,985,307	-		TX73_009115	0.21	-0.6
1,985,377	+		TX73_009115	0.23	+0.6
1,985,391	+		TX73_009115	0.24	+0.0
1,985,420	-		TX73_009115	0.25	-1.7
1,985,431	+		TX73_009115	0.25	-1.0
1,985,513	+		TX73_009115	0.28	-1.3
1,985,588	-		TX73_009115	0.31	-1.4
1,985,598	-		TX73_009115	0.31	-1.1
1,985,606	-		TX73_009115	0.31	-2.0
1,985,671	+		TX73_009115	0.34	-1.7
1,985,687	+		TX73_009115	0.34	-0.7
1,985,716	-		TX73_009115	0.35	-1.5
1,985,808	-		TX73_009115	0.39	-0.5
1,985,808	-		TX73_009115	0.39	-0.2
1,985,871	+		TX73_009115	0.41	-1.5
1,985,871	+		TX73_009115	0.41	-1.1
1,985,879	-		TX73_009115	0.41	-0.5
1,985,910	-		TX73_009115	0.42	-0.1
1,985,925	-		TX73_009115	0.43	+0.2
1,986,021	-		TX73_009115	0.46	-0.8
1,986,107	-		TX73_009115	0.49	-0.7
1,986,170	-		TX73_009115	0.52	-1.1
1,986,192	-		TX73_009115	0.52	-0.2
1,986,203	-		TX73_009115	0.53	-1.9
1,986,300	-		TX73_009115	0.56	-1.1
1,986,328	-		TX73_009115	0.57	-2.2
1,986,328	-		TX73_009115	0.57	-1.0
1,986,407	-		TX73_009115	0.60	-0.7
1,986,412	-		TX73_009115	0.60	-0.6
1,986,485	-		TX73_009115	0.63	-2.3
1,986,543	+		TX73_009115	0.65	-1.7
1,986,548	+		TX73_009115	0.65	-1.0
1,986,548	+		TX73_009115	0.65	-1.0
1,986,548	+		TX73_009115	0.65	-1.2
1,986,556	-		TX73_009115	0.65	-0.2
1,986,559	+		TX73_009115	0.65	-0.4
1,986,563	-		TX73_009115	0.65	-1.0
1,986,590	+		TX73_009115	0.66	-1.5
1,986,592	+		TX73_009115	0.67	-2.0
1,986,849	-		TX73_009115	0.76	-1.0
1,986,868	-		TX73_009115	0.76	-0.6
1,986,868	-		TX73_009115	0.76	-0.4
1,986,875	-		TX73_009115	0.77	-0.6
1,986,883	-		TX73_009115	0.77	-0.7
1,986,977	-		TX73_009115	0.80	+0.2
1,987,016	+		TX73_009115	0.82	-0.9
1,987,024	-		TX73_009115	0.82	-1.3
1,987,036	-		TX73_009115	0.82	-1.0
1,987,080	+		TX73_009115	0.84	-0.5
1,987,083	-		TX73_009115	0.84	-1.5
1,987,103	-		TX73_009115	0.85	-1.0
1,987,103	-		TX73_009115	0.85	+0.2
1,987,235	-		TX73_009115	0.89	-1.3
1,987,237	+		TX73_009115	0.89	-1.6
1,987,245	-		TX73_009115	0.90	+1.2
1,987,255	-				-0.5
1,987,330	-				-0.6
1,987,363	-				-2.3
1,987,407	+				-3.3
1,987,424	+				-2.3
1,987,480	+				-2.7
1,987,538	+				+0.5
1,987,538	+				+0.5
1,987,544	+				-0.5
1,987,554	+				+0.5
1,987,562	-				-0.9
1,987,619	+				+0.2
1,987,627	-				+0.0
1,987,627	-				+0.4
1,987,656	+				-0.5
1,987,751	-		TX73_009120	0.25	+0.7
1,987,817	-		TX73_009120	0.45	-1.0
1,987,822	-		TX73_009120	0.46	-0.2
1,987,861	+		TX73_009120	0.58	-0.5
1,987,910	+		TX73_009120	0.73	-0.7
1,987,910	+		TX73_009120	0.73	+1.4
1,987,918	-		TX73_009120	0.75	-1.0
1,987,918	-		TX73_009120	0.75	-0.5
1,987,918	-		TX73_009120	0.75	+0.4
1,987,918	-		TX73_009120	0.75	+0.4
1,988,002	-				-0.5
1,988,002	-				+0.6
1,988,002	-				+0.4
1,988,238	+				+0.7
1,988,326	-				-0.0
1,988,337	+				-0.5