Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003435

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003425 and TX73_003430 are separated by 16 nucleotidesTX73_003430 and TX73_003435 are separated by 48 nucleotidesTX73_003435 and TX73_003440 are separated by 60 nucleotidesTX73_003440 and TX73_003445 are separated by 98 nucleotides TX73_003425: TX73_003425 - benzoate-CoA ligase family protein, at 729,922 to 731,496 _003425 TX73_003430: TX73_003430 - YfhL family 4Fe-4S dicluster ferredoxin, at 731,513 to 731,758 _003430 TX73_003435: TX73_003435 - RrF2 family transcriptional regulator, at 731,807 to 732,271 _003435 TX73_003440: TX73_003440 - GNAT family N-acetyltransferase, at 732,332 to 732,811 _003440 TX73_003445: TX73_003445 - ABC transporter ATP-binding protein, at 732,910 to 733,632 _003445 Position (kb) 731 732 733Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 730.828 kb on + strand, within TX73_003425at 730.895 kb on + strand, within TX73_003425at 730.907 kb on + strand, within TX73_003425at 730.915 kb on + strand, within TX73_003425at 730.970 kb on + strand, within TX73_003425at 730.983 kb on - strand, within TX73_003425at 731.017 kb on - strand, within TX73_003425at 731.076 kb on + strand, within TX73_003425at 731.084 kb on - strand, within TX73_003425at 731.084 kb on - strand, within TX73_003425at 731.084 kb on - strand, within TX73_003425at 731.099 kb on - strand, within TX73_003425at 731.193 kb on - strand, within TX73_003425at 731.216 kb on + strand, within TX73_003425at 731.224 kb on - strand, within TX73_003425at 731.261 kb on - strand, within TX73_003425at 731.280 kb on + strand, within TX73_003425at 731.286 kb on - strand, within TX73_003425at 731.302 kb on + strand, within TX73_003425at 731.319 kb on + strand, within TX73_003425at 731.324 kb on + strand, within TX73_003425at 731.324 kb on + strand, within TX73_003425at 731.327 kb on - strand, within TX73_003425at 731.327 kb on - strand, within TX73_003425at 731.340 kb on + strandat 731.342 kb on + strandat 731.465 kb on + strandat 731.471 kb on + strandat 731.473 kb on - strandat 731.473 kb on - strandat 731.483 kb on - strandat 731.493 kb on - strandat 731.498 kb on - strandat 731.498 kb on - strandat 731.505 kb on - strandat 731.505 kb on - strandat 731.505 kb on - strandat 731.506 kb on + strandat 731.533 kb on + strandat 731.559 kb on + strand, within TX73_003430at 731.617 kb on + strand, within TX73_003430at 731.620 kb on + strand, within TX73_003430at 731.628 kb on - strand, within TX73_003430at 731.633 kb on - strand, within TX73_003430at 731.667 kb on - strand, within TX73_003430at 731.671 kb on - strand, within TX73_003430at 731.690 kb on - strand, within TX73_003430at 731.697 kb on + strand, within TX73_003430at 731.804 kb on + strandat 731.804 kb on + strandat 731.805 kb on + strandat 731.805 kb on + strandat 731.805 kb on + strandat 731.805 kb on + strandat 731.805 kb on + strandat 731.812 kb on - strandat 731.813 kb on - strandat 731.813 kb on - strandat 731.813 kb on - strandat 731.872 kb on + strand, within TX73_003435at 731.872 kb on + strand, within TX73_003435at 731.886 kb on + strand, within TX73_003435at 731.894 kb on - strand, within TX73_003435at 731.911 kb on - strand, within TX73_003435at 731.955 kb on + strand, within TX73_003435at 731.956 kb on - strand, within TX73_003435at 731.963 kb on - strand, within TX73_003435at 731.967 kb on + strand, within TX73_003435at 731.985 kb on - strand, within TX73_003435at 731.997 kb on + strand, within TX73_003435at 732.020 kb on + strand, within TX73_003435at 732.108 kb on - strand, within TX73_003435at 732.122 kb on + strand, within TX73_003435at 732.127 kb on + strand, within TX73_003435at 732.134 kb on + strand, within TX73_003435at 732.192 kb on + strand, within TX73_003435at 732.288 kb on - strandat 732.376 kb on + strandat 732.379 kb on - strandat 732.389 kb on + strand, within TX73_003440at 732.406 kb on + strand, within TX73_003440at 732.498 kb on - strand, within TX73_003440at 732.508 kb on - strand, within TX73_003440at 732.516 kb on + strand, within TX73_003440at 732.529 kb on + strand, within TX73_003440at 732.530 kb on + strand, within TX73_003440at 732.548 kb on + strand, within TX73_003440at 732.550 kb on + strand, within TX73_003440at 732.600 kb on + strand, within TX73_003440at 732.600 kb on + strand, within TX73_003440at 732.608 kb on + strand, within TX73_003440at 732.642 kb on + strand, within TX73_003440at 732.753 kb on + strand, within TX73_003440at 732.758 kb on + strand, within TX73_003440at 732.761 kb on - strand, within TX73_003440at 732.791 kb on + strandat 732.813 kb on + strandat 732.853 kb on + strandat 732.934 kb on - strandat 732.942 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.954 kb on + strandat 732.962 kb on - strandat 732.962 kb on - strandat 732.962 kb on - strandat 732.967 kb on - strandat 732.968 kb on + strandat 732.976 kb on - strandat 732.999 kb on - strand, within TX73_003445at 732.999 kb on - strand, within TX73_003445at 733.014 kb on - strand, within TX73_003445at 733.064 kb on + strand, within TX73_003445at 733.082 kb on - strand, within TX73_003445at 733.082 kb on - strand, within TX73_003445at 733.118 kb on - strand, within TX73_003445at 733.165 kb on + strand, within TX73_003445at 733.192 kb on + strand, within TX73_003445at 733.220 kb on + strand, within TX73_003445at 733.255 kb on + strand, within TX73_003445

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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730,828 + TX73_003425 0.58 -2.2
730,895 + TX73_003425 0.62 -2.4
730,907 + TX73_003425 0.63 -1.9
730,915 + TX73_003425 0.63 -2.8
730,970 + TX73_003425 0.67 -2.3
730,983 - TX73_003425 0.67 -4.1
731,017 - TX73_003425 0.70 -0.2
731,076 + TX73_003425 0.73 -1.5
731,084 - TX73_003425 0.74 -4.0
731,084 - TX73_003425 0.74 -2.0
731,084 - TX73_003425 0.74 -2.8
731,099 - TX73_003425 0.75 -2.8
731,193 - TX73_003425 0.81 -3.3
731,216 + TX73_003425 0.82 -3.6
731,224 - TX73_003425 0.83 -4.5
731,261 - TX73_003425 0.85 -1.8
731,280 + TX73_003425 0.86 -1.3
731,286 - TX73_003425 0.87 -2.9
731,302 + TX73_003425 0.88 -2.6
731,319 + TX73_003425 0.89 -2.8
731,324 + TX73_003425 0.89 -2.2
731,324 + TX73_003425 0.89 -0.6
731,327 - TX73_003425 0.89 -3.3
731,327 - TX73_003425 0.89 -2.1
731,340 + -1.6
731,342 + -3.4
731,465 + -3.2
731,471 + -0.3
731,473 - -1.3
731,473 - -3.5
731,483 - -3.0
731,493 - -4.0
731,498 - -2.9
731,498 - -1.7
731,505 - -2.1
731,505 - -1.1
731,505 - -2.6
731,506 + -2.1
731,533 + -2.1
731,559 + TX73_003430 0.19 -3.4
731,617 + TX73_003430 0.42 -4.0
731,620 + TX73_003430 0.43 -2.0
731,628 - TX73_003430 0.47 -3.2
731,633 - TX73_003430 0.49 -2.4
731,667 - TX73_003430 0.63 -2.0
731,671 - TX73_003430 0.64 -0.0
731,690 - TX73_003430 0.72 -4.7
731,697 + TX73_003430 0.75 -1.6
731,804 + -0.8
731,804 + -0.2
731,805 + -1.1
731,805 + -0.3
731,805 + +0.0
731,805 + +0.5
731,805 + -0.7
731,812 - -1.0
731,813 - -0.8
731,813 - -0.8
731,813 - -0.8
731,872 + TX73_003435 0.14 +1.9
731,872 + TX73_003435 0.14 +2.9
731,886 + TX73_003435 0.17 +1.9
731,894 - TX73_003435 0.19 +2.9
731,911 - TX73_003435 0.22 +0.4
731,955 + TX73_003435 0.32 +3.9
731,956 - TX73_003435 0.32 +3.4
731,963 - TX73_003435 0.34 +3.5
731,967 + TX73_003435 0.34 +3.9
731,985 - TX73_003435 0.38 +3.2
731,997 + TX73_003435 0.41 +3.5
732,020 + TX73_003435 0.46 +4.1
732,108 - TX73_003435 0.65 +3.4
732,122 + TX73_003435 0.68 +3.5
732,127 + TX73_003435 0.69 +3.5
732,134 + TX73_003435 0.70 +4.2
732,192 + TX73_003435 0.83 +4.8
732,288 - -0.7
732,376 + -2.8
732,379 - -3.2
732,389 + TX73_003440 0.12 -3.0
732,406 + TX73_003440 0.15 -3.2
732,498 - TX73_003440 0.35 -3.9
732,508 - TX73_003440 0.37 -4.2
732,516 + TX73_003440 0.38 -3.6
732,529 + TX73_003440 0.41 -3.6
732,530 + TX73_003440 0.41 -4.4
732,548 + TX73_003440 0.45 -2.3
732,550 + TX73_003440 0.45 -3.4
732,600 + TX73_003440 0.56 -3.8
732,600 + TX73_003440 0.56 -4.9
732,608 + TX73_003440 0.57 -2.5
732,642 + TX73_003440 0.65 -4.0
732,753 + TX73_003440 0.88 -0.8
732,758 + TX73_003440 0.89 -4.9
732,761 - TX73_003440 0.89 -2.7
732,791 + -2.4
732,813 + -2.9
732,853 + -1.5
732,934 - -0.6
732,942 + -0.4
732,954 + -0.5
732,954 + -1.0
732,954 + +0.2
732,954 + -1.4
732,954 + +0.9
732,962 - -1.0
732,962 - -0.3
732,962 - -0.5
732,967 - -0.4
732,968 + -0.3
732,976 - +0.1
732,999 - TX73_003445 0.12 +0.1
732,999 - TX73_003445 0.12 -0.1
733,014 - TX73_003445 0.14 -0.2
733,064 + TX73_003445 0.21 +0.4
733,082 - TX73_003445 0.24 -0.4
733,082 - TX73_003445 0.24 -0.4
733,118 - TX73_003445 0.29 -0.7
733,165 + TX73_003445 0.35 -0.4
733,192 + TX73_003445 0.39 -0.0
733,220 + TX73_003445 0.43 -0.8
733,255 + TX73_003445 0.48 -1.0

Or see this region's nucleotide sequence