Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024150

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024145 and TX73_024150 are separated by 255 nucleotidesTX73_024150 and TX73_024155 overlap by 1 nucleotidesTX73_024155 and TX73_024160 are separated by 32 nucleotides TX73_024145: TX73_024145 - ABC transporter ATP-binding protein, at 5,235,876 to 5,237,021 _024145 TX73_024150: TX73_024150 - CoA synthetase, at 5,237,277 to 5,238,083 _024150 TX73_024155: TX73_024155 - CoA synthetase, at 5,238,083 to 5,238,850 _024155 TX73_024160: TX73_024160 - molybdopterin-dependent oxidoreductase, at 5,238,883 to 5,241,192 _024160 Position (kb) 5237 5238 5239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5236.283 kb on + strand, within TX73_024145at 5236.311 kb on - strand, within TX73_024145at 5236.348 kb on + strand, within TX73_024145at 5236.356 kb on + strand, within TX73_024145at 5236.358 kb on + strand, within TX73_024145at 5236.358 kb on + strand, within TX73_024145at 5236.358 kb on + strand, within TX73_024145at 5236.358 kb on + strand, within TX73_024145at 5236.358 kb on + strand, within TX73_024145at 5236.366 kb on - strand, within TX73_024145at 5236.366 kb on - strand, within TX73_024145at 5236.374 kb on - strand, within TX73_024145at 5236.376 kb on + strand, within TX73_024145at 5236.381 kb on + strand, within TX73_024145at 5236.381 kb on + strand, within TX73_024145at 5236.392 kb on + strand, within TX73_024145at 5236.397 kb on + strand, within TX73_024145at 5236.397 kb on + strand, within TX73_024145at 5236.405 kb on - strand, within TX73_024145at 5236.405 kb on - strand, within TX73_024145at 5236.450 kb on + strand, within TX73_024145at 5236.477 kb on + strand, within TX73_024145at 5236.485 kb on - strand, within TX73_024145at 5236.526 kb on - strand, within TX73_024145at 5236.526 kb on - strand, within TX73_024145at 5236.528 kb on - strand, within TX73_024145at 5236.554 kb on - strand, within TX73_024145at 5236.565 kb on - strand, within TX73_024145at 5236.588 kb on - strand, within TX73_024145at 5236.609 kb on + strand, within TX73_024145at 5236.620 kb on + strand, within TX73_024145at 5236.663 kb on + strand, within TX73_024145at 5236.731 kb on + strand, within TX73_024145at 5236.731 kb on + strand, within TX73_024145at 5236.739 kb on - strand, within TX73_024145at 5236.768 kb on + strand, within TX73_024145at 5236.776 kb on + strand, within TX73_024145at 5236.836 kb on - strand, within TX73_024145at 5236.885 kb on + strand, within TX73_024145at 5236.960 kb on - strandat 5236.962 kb on - strandat 5236.967 kb on + strandat 5236.982 kb on + strandat 5236.998 kb on + strandat 5237.006 kb on + strandat 5237.037 kb on - strandat 5237.103 kb on - strandat 5237.113 kb on - strandat 5237.129 kb on - strandat 5237.161 kb on - strandat 5237.182 kb on + strandat 5237.204 kb on + strandat 5237.212 kb on - strandat 5237.212 kb on - strandat 5237.316 kb on - strandat 5237.419 kb on - strand, within TX73_024150at 5237.442 kb on + strand, within TX73_024150at 5237.455 kb on + strand, within TX73_024150at 5237.455 kb on + strand, within TX73_024150at 5237.460 kb on + strand, within TX73_024150at 5237.463 kb on - strand, within TX73_024150at 5237.463 kb on - strand, within TX73_024150at 5237.463 kb on - strand, within TX73_024150at 5237.465 kb on + strand, within TX73_024150at 5237.466 kb on + strand, within TX73_024150at 5237.473 kb on - strand, within TX73_024150at 5237.485 kb on + strand, within TX73_024150at 5237.493 kb on - strand, within TX73_024150at 5237.530 kb on - strand, within TX73_024150at 5237.542 kb on - strand, within TX73_024150at 5237.597 kb on - strand, within TX73_024150at 5237.597 kb on - strand, within TX73_024150at 5237.647 kb on - strand, within TX73_024150at 5237.670 kb on - strand, within TX73_024150at 5237.707 kb on - strand, within TX73_024150at 5237.713 kb on + strand, within TX73_024150at 5237.753 kb on + strand, within TX73_024150at 5237.817 kb on + strand, within TX73_024150at 5237.846 kb on + strand, within TX73_024150at 5237.894 kb on - strand, within TX73_024150at 5237.960 kb on + strand, within TX73_024150at 5237.960 kb on + strand, within TX73_024150at 5237.968 kb on - strand, within TX73_024150at 5237.968 kb on - strand, within TX73_024150at 5237.995 kb on + strand, within TX73_024150at 5238.041 kb on - strandat 5238.076 kb on - strandat 5238.087 kb on - strandat 5238.115 kb on - strandat 5238.311 kb on + strand, within TX73_024155at 5238.314 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.319 kb on - strand, within TX73_024155at 5238.350 kb on - strand, within TX73_024155at 5238.387 kb on - strand, within TX73_024155at 5238.445 kb on + strand, within TX73_024155at 5238.445 kb on + strand, within TX73_024155at 5238.453 kb on - strand, within TX73_024155at 5238.453 kb on - strand, within TX73_024155at 5238.467 kb on + strand, within TX73_024155at 5238.538 kb on + strand, within TX73_024155at 5238.586 kb on - strand, within TX73_024155at 5238.588 kb on + strand, within TX73_024155at 5238.598 kb on + strand, within TX73_024155at 5238.684 kb on + strand, within TX73_024155at 5238.787 kb on - strandat 5238.844 kb on + strandat 5238.886 kb on + strandat 5238.909 kb on - strandat 5238.926 kb on + strandat 5238.926 kb on + strandat 5238.934 kb on - strandat 5238.948 kb on - strandat 5239.012 kb on + strandat 5239.012 kb on + strandat 5239.012 kb on + strandat 5239.020 kb on - strandat 5239.031 kb on - strandat 5239.043 kb on - strandat 5239.056 kb on + strandat 5239.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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5,236,283 + TX73_024145 0.36 +1.2
5,236,311 - TX73_024145 0.38 +0.4
5,236,348 + TX73_024145 0.41 -2.4
5,236,356 + TX73_024145 0.42 -1.5
5,236,358 + TX73_024145 0.42 -1.2
5,236,358 + TX73_024145 0.42 +1.2
5,236,358 + TX73_024145 0.42 +0.3
5,236,358 + TX73_024145 0.42 -2.5
5,236,358 + TX73_024145 0.42 +1.9
5,236,366 - TX73_024145 0.43 +0.0
5,236,366 - TX73_024145 0.43 +1.1
5,236,374 - TX73_024145 0.43 -0.9
5,236,376 + TX73_024145 0.44 +0.0
5,236,381 + TX73_024145 0.44 +0.5
5,236,381 + TX73_024145 0.44 -0.3
5,236,392 + TX73_024145 0.45 +0.8
5,236,397 + TX73_024145 0.45 +0.4
5,236,397 + TX73_024145 0.45 +0.5
5,236,405 - TX73_024145 0.46 -0.8
5,236,405 - TX73_024145 0.46 +0.3
5,236,450 + TX73_024145 0.50 +0.9
5,236,477 + TX73_024145 0.52 -1.4
5,236,485 - TX73_024145 0.53 -0.1
5,236,526 - TX73_024145 0.57 -0.3
5,236,526 - TX73_024145 0.57 +0.2
5,236,528 - TX73_024145 0.57 -0.0
5,236,554 - TX73_024145 0.59 -2.7
5,236,565 - TX73_024145 0.60 -2.0
5,236,588 - TX73_024145 0.62 -1.2
5,236,609 + TX73_024145 0.64 -0.4
5,236,620 + TX73_024145 0.65 +2.0
5,236,663 + TX73_024145 0.69 +0.8
5,236,731 + TX73_024145 0.75 +0.2
5,236,731 + TX73_024145 0.75 -0.4
5,236,739 - TX73_024145 0.75 +0.8
5,236,768 + TX73_024145 0.78 +0.6
5,236,776 + TX73_024145 0.79 +1.0
5,236,836 - TX73_024145 0.84 +0.8
5,236,885 + TX73_024145 0.88 +1.0
5,236,960 - +1.1
5,236,962 - -0.3
5,236,967 + +1.1
5,236,982 + -1.1
5,236,998 + -0.6
5,237,006 + +0.6
5,237,037 - +0.0
5,237,103 - -0.3
5,237,113 - -0.9
5,237,129 - +0.2
5,237,161 - +0.9
5,237,182 + -1.5
5,237,204 + +0.9
5,237,212 - +1.0
5,237,212 - +0.8
5,237,316 - -0.4
5,237,419 - TX73_024150 0.18 +0.2
5,237,442 + TX73_024150 0.20 +0.7
5,237,455 + TX73_024150 0.22 +2.4
5,237,455 + TX73_024150 0.22 +0.1
5,237,460 + TX73_024150 0.23 +0.7
5,237,463 - TX73_024150 0.23 +0.9
5,237,463 - TX73_024150 0.23 -1.5
5,237,463 - TX73_024150 0.23 +0.2
5,237,465 + TX73_024150 0.23 -0.5
5,237,466 + TX73_024150 0.23 +0.6
5,237,473 - TX73_024150 0.24 +1.3
5,237,485 + TX73_024150 0.26 -0.7
5,237,493 - TX73_024150 0.27 +0.4
5,237,530 - TX73_024150 0.31 +0.5
5,237,542 - TX73_024150 0.33 -2.8
5,237,597 - TX73_024150 0.40 -1.1
5,237,597 - TX73_024150 0.40 -2.4
5,237,647 - TX73_024150 0.46 +1.5
5,237,670 - TX73_024150 0.49 -0.6
5,237,707 - TX73_024150 0.53 +0.5
5,237,713 + TX73_024150 0.54 -1.4
5,237,753 + TX73_024150 0.59 -0.2
5,237,817 + TX73_024150 0.67 +0.2
5,237,846 + TX73_024150 0.71 -0.4
5,237,894 - TX73_024150 0.76 -0.3
5,237,960 + TX73_024150 0.85 +0.5
5,237,960 + TX73_024150 0.85 +0.9
5,237,968 - TX73_024150 0.86 +0.4
5,237,968 - TX73_024150 0.86 +0.6
5,237,995 + TX73_024150 0.89 -0.4
5,238,041 - -0.9
5,238,076 - +0.3
5,238,087 - +0.1
5,238,115 - +0.3
5,238,311 + TX73_024155 0.30 +1.0
5,238,314 - TX73_024155 0.30 +0.3
5,238,319 - TX73_024155 0.31 -1.1
5,238,319 - TX73_024155 0.31 +1.3
5,238,319 - TX73_024155 0.31 +0.9
5,238,350 - TX73_024155 0.35 -1.2
5,238,387 - TX73_024155 0.40 +0.2
5,238,445 + TX73_024155 0.47 +2.7
5,238,445 + TX73_024155 0.47 -0.2
5,238,453 - TX73_024155 0.48 -0.1
5,238,453 - TX73_024155 0.48 -0.4
5,238,467 + TX73_024155 0.50 -0.1
5,238,538 + TX73_024155 0.59 -0.8
5,238,586 - TX73_024155 0.65 +0.6
5,238,588 + TX73_024155 0.66 -1.2
5,238,598 + TX73_024155 0.67 +1.1
5,238,684 + TX73_024155 0.78 +0.3
5,238,787 - +0.5
5,238,844 + +0.5
5,238,886 + -1.0
5,238,909 - +0.6
5,238,926 + -3.0
5,238,926 + -1.4
5,238,934 - +2.8
5,238,948 - +0.7
5,239,012 + -0.2
5,239,012 + +1.0
5,239,012 + +0.0
5,239,020 - +0.2
5,239,031 - +0.5
5,239,043 - +0.5
5,239,056 + +1.3
5,239,082 - -1.1

Or see this region's nucleotide sequence