Experiment: 4-Hydroxybenzoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023860 and TX73_023865 are separated by 100 nucleotides TX73_023865 and TX73_023870 overlap by 14 nucleotides TX73_023870 and TX73_023875 overlap by 8 nucleotides TX73_023875 and TX73_023880 are separated by 221 nucleotides
TX73_023860: TX73_023860 - acyl-CoA acyltransferase, at 5,180,010 to 5,180,894
_023860
TX73_023865: TX73_023865 - acyl carrier protein, at 5,180,995 to 5,181,240
_023865
TX73_023870: TX73_023870 - fatty acid--CoA ligase family protein, at 5,181,227 to 5,182,606
_023870
TX73_023875: TX73_023875 - SDR family NAD(P)-dependent oxidoreductase, at 5,182,599 to 5,183,330
_023875
TX73_023880: TX73_023880 - amino acid--[acyl-carrier-protein] ligase, at 5,183,552 to 5,184,493
_023880
Position (kb) 5181
5182
5183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5180.252 kb on + strand, within TX73_023860 at 5180.272 kb on - strand, within TX73_023860 at 5180.305 kb on + strand, within TX73_023860 at 5180.345 kb on + strand, within TX73_023860 at 5180.387 kb on - strand, within TX73_023860 at 5180.412 kb on - strand, within TX73_023860 at 5180.422 kb on - strand, within TX73_023860 at 5180.449 kb on + strand, within TX73_023860 at 5180.449 kb on + strand, within TX73_023860 at 5180.449 kb on + strand, within TX73_023860 at 5180.449 kb on + strand, within TX73_023860 at 5180.457 kb on - strand, within TX73_023860 at 5180.457 kb on - strand, within TX73_023860 at 5180.457 kb on - strand, within TX73_023860 at 5180.461 kb on + strand, within TX73_023860 at 5180.570 kb on + strand, within TX73_023860 at 5180.640 kb on - strand, within TX73_023860 at 5180.645 kb on - strand, within TX73_023860 at 5180.656 kb on - strand, within TX73_023860 at 5180.671 kb on + strand, within TX73_023860 at 5180.679 kb on - strand, within TX73_023860 at 5180.684 kb on + strand, within TX73_023860 at 5180.702 kb on - strand, within TX73_023860 at 5180.759 kb on + strand, within TX73_023860 at 5180.767 kb on - strand, within TX73_023860 at 5180.767 kb on - strand, within TX73_023860 at 5180.767 kb on - strand, within TX73_023860 at 5180.767 kb on - strand, within TX73_023860 at 5180.773 kb on + strand, within TX73_023860 at 5180.817 kb on + strand at 5181.077 kb on + strand, within TX73_023865 at 5181.077 kb on + strand, within TX73_023865 at 5181.077 kb on + strand, within TX73_023865 at 5181.085 kb on - strand, within TX73_023865 at 5181.085 kb on - strand, within TX73_023865 at 5181.085 kb on - strand, within TX73_023865 at 5181.085 kb on - strand, within TX73_023865 at 5181.090 kb on - strand, within TX73_023865 at 5181.106 kb on - strand, within TX73_023865 at 5181.113 kb on + strand, within TX73_023865 at 5181.113 kb on + strand, within TX73_023865 at 5181.113 kb on + strand, within TX73_023865 at 5181.155 kb on - strand, within TX73_023865 at 5181.162 kb on + strand, within TX73_023865 at 5181.170 kb on + strand, within TX73_023865 at 5181.170 kb on - strand, within TX73_023865 at 5181.241 kb on + strand at 5181.256 kb on + strand at 5181.267 kb on + strand at 5181.267 kb on + strand at 5181.272 kb on + strand at 5181.280 kb on - strand at 5181.285 kb on - strand at 5181.308 kb on - strand at 5181.308 kb on - strand at 5181.370 kb on + strand, within TX73_023870 at 5181.375 kb on + strand, within TX73_023870 at 5181.375 kb on + strand, within TX73_023870 at 5181.388 kb on - strand, within TX73_023870 at 5181.396 kb on + strand, within TX73_023870 at 5181.403 kb on + strand, within TX73_023870 at 5181.408 kb on + strand, within TX73_023870 at 5181.408 kb on + strand, within TX73_023870 at 5181.432 kb on - strand, within TX73_023870 at 5181.463 kb on - strand, within TX73_023870 at 5181.476 kb on + strand, within TX73_023870 at 5181.484 kb on + strand, within TX73_023870 at 5181.484 kb on - strand, within TX73_023870 at 5181.562 kb on - strand, within TX73_023870 at 5181.563 kb on - strand, within TX73_023870 at 5181.575 kb on - strand, within TX73_023870 at 5181.599 kb on - strand, within TX73_023870 at 5181.648 kb on + strand, within TX73_023870 at 5181.740 kb on + strand, within TX73_023870 at 5181.748 kb on - strand, within TX73_023870 at 5181.841 kb on + strand, within TX73_023870 at 5181.893 kb on - strand, within TX73_023870 at 5181.988 kb on - strand, within TX73_023870 at 5182.001 kb on + strand, within TX73_023870 at 5182.054 kb on + strand, within TX73_023870 at 5182.056 kb on - strand, within TX73_023870 at 5182.056 kb on - strand, within TX73_023870 at 5182.070 kb on + strand, within TX73_023870 at 5182.102 kb on + strand, within TX73_023870 at 5182.239 kb on + strand, within TX73_023870 at 5182.260 kb on + strand, within TX73_023870 at 5182.334 kb on - strand, within TX73_023870 at 5182.379 kb on + strand, within TX73_023870 at 5182.471 kb on + strand at 5182.486 kb on + strand at 5182.486 kb on - strand at 5182.609 kb on - strand at 5182.609 kb on - strand at 5182.609 kb on - strand at 5182.699 kb on - strand, within TX73_023875 at 5182.710 kb on - strand, within TX73_023875 at 5182.727 kb on + strand, within TX73_023875 at 5182.752 kb on - strand, within TX73_023875 at 5182.759 kb on + strand, within TX73_023875 at 5182.759 kb on + strand, within TX73_023875 at 5182.808 kb on - strand, within TX73_023875 at 5182.834 kb on - strand, within TX73_023875 at 5182.904 kb on + strand, within TX73_023875 at 5183.046 kb on + strand, within TX73_023875 at 5183.085 kb on - strand, within TX73_023875 at 5183.186 kb on - strand, within TX73_023875 at 5183.306 kb on - strand at 5183.306 kb on - strand at 5183.325 kb on + strand at 5183.338 kb on - strand at 5183.338 kb on - strand at 5183.338 kb on - strand at 5183.356 kb on + strand at 5183.356 kb on - strand at 5183.394 kb on + strand at 5183.416 kb on + strand at 5183.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C) remove 5,180,252 + TX73_023860 0.27 -3.1 5,180,272 - TX73_023860 0.30 -0.2 5,180,305 + TX73_023860 0.33 -0.9 5,180,345 + TX73_023860 0.38 -1.0 5,180,387 - TX73_023860 0.43 -0.6 5,180,412 - TX73_023860 0.45 -1.0 5,180,422 - TX73_023860 0.47 -0.1 5,180,449 + TX73_023860 0.50 +1.2 5,180,449 + TX73_023860 0.50 +1.3 5,180,449 + TX73_023860 0.50 +0.0 5,180,449 + TX73_023860 0.50 -1.1 5,180,457 - TX73_023860 0.51 +0.6 5,180,457 - TX73_023860 0.51 +0.7 5,180,457 - TX73_023860 0.51 +2.0 5,180,461 + TX73_023860 0.51 +0.3 5,180,570 + TX73_023860 0.63 +1.5 5,180,640 - TX73_023860 0.71 -0.4 5,180,645 - TX73_023860 0.72 -0.7 5,180,656 - TX73_023860 0.73 -1.8 5,180,671 + TX73_023860 0.75 +0.3 5,180,679 - TX73_023860 0.76 -0.4 5,180,684 + TX73_023860 0.76 -2.6 5,180,702 - TX73_023860 0.78 -1.8 5,180,759 + TX73_023860 0.85 -3.2 5,180,767 - TX73_023860 0.86 -2.3 5,180,767 - TX73_023860 0.86 -0.2 5,180,767 - TX73_023860 0.86 -2.0 5,180,767 - TX73_023860 0.86 +1.2 5,180,773 + TX73_023860 0.86 -1.0 5,180,817 + -2.5 5,181,077 + TX73_023865 0.33 -1.1 5,181,077 + TX73_023865 0.33 +1.2 5,181,077 + TX73_023865 0.33 +0.7 5,181,085 - TX73_023865 0.37 -1.0 5,181,085 - TX73_023865 0.37 +0.3 5,181,085 - TX73_023865 0.37 +0.1 5,181,085 - TX73_023865 0.37 +0.1 5,181,090 - TX73_023865 0.39 -1.0 5,181,106 - TX73_023865 0.45 +0.2 5,181,113 + TX73_023865 0.48 +1.5 5,181,113 + TX73_023865 0.48 -0.8 5,181,113 + TX73_023865 0.48 -0.4 5,181,155 - TX73_023865 0.65 +0.6 5,181,162 + TX73_023865 0.68 +0.2 5,181,170 + TX73_023865 0.71 +0.3 5,181,170 - TX73_023865 0.71 +0.5 5,181,241 + -0.0 5,181,256 + +0.8 5,181,267 + -0.2 5,181,267 + -0.5 5,181,272 + +1.0 5,181,280 - +0.3 5,181,285 - +0.7 5,181,308 - +0.2 5,181,308 - -1.5 5,181,370 + TX73_023870 0.10 -2.1 5,181,375 + TX73_023870 0.11 -0.2 5,181,375 + TX73_023870 0.11 +0.7 5,181,388 - TX73_023870 0.12 +0.2 5,181,396 + TX73_023870 0.12 +1.4 5,181,403 + TX73_023870 0.13 +1.3 5,181,408 + TX73_023870 0.13 +0.4 5,181,408 + TX73_023870 0.13 -3.2 5,181,432 - TX73_023870 0.15 +0.9 5,181,463 - TX73_023870 0.17 -3.1 5,181,476 + TX73_023870 0.18 +0.6 5,181,484 + TX73_023870 0.19 -1.1 5,181,484 - TX73_023870 0.19 -2.0 5,181,562 - TX73_023870 0.24 +1.0 5,181,563 - TX73_023870 0.24 -0.4 5,181,575 - TX73_023870 0.25 -0.7 5,181,599 - TX73_023870 0.27 +0.5 5,181,648 + TX73_023870 0.31 -1.4 5,181,740 + TX73_023870 0.37 -0.4 5,181,748 - TX73_023870 0.38 -0.5 5,181,841 + TX73_023870 0.44 +0.3 5,181,893 - TX73_023870 0.48 +1.0 5,181,988 - TX73_023870 0.55 +0.1 5,182,001 + TX73_023870 0.56 +0.5 5,182,054 + TX73_023870 0.60 -0.5 5,182,056 - TX73_023870 0.60 -0.2 5,182,056 - TX73_023870 0.60 -1.1 5,182,070 + TX73_023870 0.61 +0.3 5,182,102 + TX73_023870 0.63 -1.7 5,182,239 + TX73_023870 0.73 +0.2 5,182,260 + TX73_023870 0.75 -0.2 5,182,334 - TX73_023870 0.80 +1.0 5,182,379 + TX73_023870 0.83 +0.6 5,182,471 + -0.7 5,182,486 + +0.4 5,182,486 - +0.3 5,182,609 - -1.5 5,182,609 - +0.8 5,182,609 - +0.2 5,182,699 - TX73_023875 0.14 +1.0 5,182,710 - TX73_023875 0.15 +1.1 5,182,727 + TX73_023875 0.17 +0.1 5,182,752 - TX73_023875 0.21 +1.4 5,182,759 + TX73_023875 0.22 -0.1 5,182,759 + TX73_023875 0.22 +0.3 5,182,808 - TX73_023875 0.29 +1.6 5,182,834 - TX73_023875 0.32 +0.5 5,182,904 + TX73_023875 0.42 +1.1 5,183,046 + TX73_023875 0.61 -0.3 5,183,085 - TX73_023875 0.66 +0.4 5,183,186 - TX73_023875 0.80 +0.2 5,183,306 - -0.1 5,183,306 - +1.7 5,183,325 + +0.0 5,183,338 - -1.1 5,183,338 - -1.4 5,183,338 - -2.5 5,183,356 + +0.4 5,183,356 - -0.9 5,183,394 + -1.1 5,183,416 + +0.1 5,183,430 - +0.0
Or see this region's nucleotide sequence