Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019585

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019580 and TX73_019585 are separated by 124 nucleotidesTX73_019585 and TX73_019590 are separated by 19 nucleotides TX73_019580: TX73_019580 - FAD-dependent oxidoreductase, at 4,279,935 to 4,281,152 _019580 TX73_019585: TX73_019585 - glycosyltransferase family 39 protein, at 4,281,277 to 4,282,761 _019585 TX73_019590: TX73_019590 - glycosyltransferase family 2 protein, at 4,282,781 to 4,283,917 _019590 Position (kb) 4281 4282 4283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4280.308 kb on + strand, within TX73_019580at 4280.308 kb on + strand, within TX73_019580at 4280.308 kb on + strand, within TX73_019580at 4280.310 kb on + strand, within TX73_019580at 4280.316 kb on - strand, within TX73_019580at 4280.355 kb on + strand, within TX73_019580at 4280.355 kb on + strand, within TX73_019580at 4280.399 kb on + strand, within TX73_019580at 4280.471 kb on - strand, within TX73_019580at 4280.481 kb on + strand, within TX73_019580at 4280.489 kb on - strand, within TX73_019580at 4280.494 kb on - strand, within TX73_019580at 4280.587 kb on + strand, within TX73_019580at 4280.614 kb on + strand, within TX73_019580at 4280.656 kb on + strand, within TX73_019580at 4280.656 kb on + strand, within TX73_019580at 4280.661 kb on + strand, within TX73_019580at 4280.664 kb on - strand, within TX73_019580at 4280.664 kb on - strand, within TX73_019580at 4280.682 kb on + strand, within TX73_019580at 4280.689 kb on - strand, within TX73_019580at 4280.830 kb on - strand, within TX73_019580at 4280.857 kb on - strand, within TX73_019580at 4281.005 kb on - strand, within TX73_019580at 4281.009 kb on - strand, within TX73_019580at 4281.092 kb on + strandat 4281.092 kb on + strandat 4281.152 kb on + strandat 4281.208 kb on - strandat 4281.210 kb on + strandat 4281.210 kb on + strandat 4281.218 kb on + strandat 4281.218 kb on - strandat 4281.218 kb on - strandat 4281.220 kb on + strandat 4281.226 kb on + strandat 4281.274 kb on - strandat 4281.275 kb on + strandat 4281.297 kb on + strandat 4281.347 kb on - strandat 4281.388 kb on - strandat 4281.403 kb on - strandat 4281.412 kb on + strandat 4281.479 kb on - strand, within TX73_019585at 4281.520 kb on + strand, within TX73_019585at 4281.528 kb on - strand, within TX73_019585at 4281.528 kb on - strand, within TX73_019585at 4281.535 kb on + strand, within TX73_019585at 4281.543 kb on - strand, within TX73_019585at 4281.598 kb on + strand, within TX73_019585at 4281.631 kb on - strand, within TX73_019585at 4281.648 kb on - strand, within TX73_019585at 4281.659 kb on - strand, within TX73_019585at 4281.697 kb on + strand, within TX73_019585at 4281.713 kb on + strand, within TX73_019585at 4281.715 kb on - strand, within TX73_019585at 4281.733 kb on + strand, within TX73_019585at 4281.733 kb on + strand, within TX73_019585at 4281.744 kb on - strand, within TX73_019585at 4281.746 kb on - strand, within TX73_019585at 4281.748 kb on + strand, within TX73_019585at 4281.753 kb on + strand, within TX73_019585at 4281.764 kb on - strand, within TX73_019585at 4281.853 kb on - strand, within TX73_019585at 4281.866 kb on - strand, within TX73_019585at 4281.866 kb on - strand, within TX73_019585at 4281.872 kb on + strand, within TX73_019585at 4281.872 kb on + strand, within TX73_019585at 4281.886 kb on + strand, within TX73_019585at 4281.886 kb on - strand, within TX73_019585at 4281.910 kb on - strand, within TX73_019585at 4281.910 kb on - strand, within TX73_019585at 4281.928 kb on - strand, within TX73_019585at 4282.048 kb on - strand, within TX73_019585at 4282.061 kb on - strand, within TX73_019585at 4282.084 kb on - strand, within TX73_019585at 4282.118 kb on + strand, within TX73_019585at 4282.131 kb on - strand, within TX73_019585at 4282.133 kb on + strand, within TX73_019585at 4282.133 kb on + strand, within TX73_019585at 4282.148 kb on + strand, within TX73_019585at 4282.156 kb on - strand, within TX73_019585at 4282.156 kb on - strand, within TX73_019585at 4282.156 kb on - strand, within TX73_019585at 4282.156 kb on - strand, within TX73_019585at 4282.196 kb on - strand, within TX73_019585at 4282.200 kb on + strand, within TX73_019585at 4282.237 kb on + strand, within TX73_019585at 4282.245 kb on + strand, within TX73_019585at 4282.258 kb on + strand, within TX73_019585at 4282.292 kb on - strand, within TX73_019585at 4282.325 kb on + strand, within TX73_019585at 4282.325 kb on + strand, within TX73_019585at 4282.370 kb on - strand, within TX73_019585at 4282.377 kb on - strand, within TX73_019585at 4282.407 kb on + strand, within TX73_019585at 4282.432 kb on - strand, within TX73_019585at 4282.433 kb on - strand, within TX73_019585at 4282.436 kb on + strand, within TX73_019585at 4282.542 kb on + strand, within TX73_019585at 4282.588 kb on - strand, within TX73_019585at 4282.622 kb on + strandat 4282.657 kb on + strandat 4282.676 kb on - strandat 4282.683 kb on - strandat 4282.683 kb on - strandat 4282.704 kb on + strandat 4282.717 kb on - strandat 4282.725 kb on - strandat 4282.780 kb on + strandat 4282.828 kb on - strandat 4282.862 kb on - strandat 4282.868 kb on + strandat 4282.909 kb on - strand, within TX73_019590at 4282.943 kb on - strand, within TX73_019590at 4282.951 kb on + strand, within TX73_019590at 4282.953 kb on - strand, within TX73_019590at 4282.979 kb on - strand, within TX73_019590at 4283.024 kb on + strand, within TX73_019590at 4283.036 kb on - strand, within TX73_019590at 4283.048 kb on + strand, within TX73_019590at 4283.069 kb on - strand, within TX73_019590at 4283.080 kb on + strand, within TX73_019590at 4283.080 kb on + strand, within TX73_019590at 4283.087 kb on - strand, within TX73_019590at 4283.088 kb on - strand, within TX73_019590at 4283.096 kb on - strand, within TX73_019590at 4283.098 kb on - strand, within TX73_019590at 4283.100 kb on + strand, within TX73_019590at 4283.106 kb on - strand, within TX73_019590at 4283.108 kb on + strand, within TX73_019590at 4283.116 kb on - strand, within TX73_019590at 4283.127 kb on + strand, within TX73_019590at 4283.127 kb on + strand, within TX73_019590at 4283.135 kb on - strand, within TX73_019590at 4283.146 kb on + strand, within TX73_019590at 4283.215 kb on + strand, within TX73_019590at 4283.227 kb on - strand, within TX73_019590at 4283.251 kb on + strand, within TX73_019590at 4283.261 kb on + strand, within TX73_019590at 4283.266 kb on - strand, within TX73_019590at 4283.277 kb on - strand, within TX73_019590at 4283.316 kb on - strand, within TX73_019590at 4283.327 kb on + strand, within TX73_019590at 4283.334 kb on + strand, within TX73_019590at 4283.342 kb on - strand, within TX73_019590at 4283.346 kb on + strand, within TX73_019590at 4283.349 kb on - strand, within TX73_019590at 4283.356 kb on + strand, within TX73_019590at 4283.356 kb on + strand, within TX73_019590at 4283.356 kb on + strand, within TX73_019590at 4283.433 kb on + strand, within TX73_019590at 4283.453 kb on + strand, within TX73_019590at 4283.453 kb on + strand, within TX73_019590at 4283.461 kb on - strand, within TX73_019590at 4283.484 kb on + strand, within TX73_019590at 4283.537 kb on - strand, within TX73_019590at 4283.542 kb on - strand, within TX73_019590at 4283.542 kb on - strand, within TX73_019590at 4283.549 kb on - strand, within TX73_019590at 4283.576 kb on + strand, within TX73_019590at 4283.581 kb on + strand, within TX73_019590at 4283.584 kb on - strand, within TX73_019590at 4283.587 kb on - strand, within TX73_019590at 4283.632 kb on + strand, within TX73_019590at 4283.716 kb on + strand, within TX73_019590at 4283.719 kb on + strand, within TX73_019590at 4283.724 kb on - strand, within TX73_019590at 4283.727 kb on + strand, within TX73_019590at 4283.727 kb on - strand, within TX73_019590at 4283.727 kb on - strand, within TX73_019590at 4283.730 kb on - strand, within TX73_019590at 4283.737 kb on + strand, within TX73_019590

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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4,280,308 + TX73_019580 0.31 +1.0
4,280,308 + TX73_019580 0.31 -0.3
4,280,308 + TX73_019580 0.31 +0.4
4,280,310 + TX73_019580 0.31 -0.8
4,280,316 - TX73_019580 0.31 +0.4
4,280,355 + TX73_019580 0.34 +0.5
4,280,355 + TX73_019580 0.34 -0.9
4,280,399 + TX73_019580 0.38 -1.8
4,280,471 - TX73_019580 0.44 -0.8
4,280,481 + TX73_019580 0.45 +0.8
4,280,489 - TX73_019580 0.45 -0.1
4,280,494 - TX73_019580 0.46 -3.0
4,280,587 + TX73_019580 0.54 +0.2
4,280,614 + TX73_019580 0.56 -0.3
4,280,656 + TX73_019580 0.59 -2.3
4,280,656 + TX73_019580 0.59 -2.0
4,280,661 + TX73_019580 0.60 -0.6
4,280,664 - TX73_019580 0.60 +0.5
4,280,664 - TX73_019580 0.60 -0.3
4,280,682 + TX73_019580 0.61 -2.1
4,280,689 - TX73_019580 0.62 -0.3
4,280,830 - TX73_019580 0.73 +0.6
4,280,857 - TX73_019580 0.76 -0.7
4,281,005 - TX73_019580 0.88 -0.5
4,281,009 - TX73_019580 0.88 -0.3
4,281,092 + +0.3
4,281,092 + -0.5
4,281,152 + -0.2
4,281,208 - +1.7
4,281,210 + +0.6
4,281,210 + -2.0
4,281,218 + -3.1
4,281,218 - -0.1
4,281,218 - -0.7
4,281,220 + -0.4
4,281,226 + -0.9
4,281,274 - +0.1
4,281,275 + -0.9
4,281,297 + +0.8
4,281,347 - +0.7
4,281,388 - +1.3
4,281,403 - -2.0
4,281,412 + +1.3
4,281,479 - TX73_019585 0.14 -0.5
4,281,520 + TX73_019585 0.16 +0.0
4,281,528 - TX73_019585 0.17 -1.2
4,281,528 - TX73_019585 0.17 -2.9
4,281,535 + TX73_019585 0.17 +1.2
4,281,543 - TX73_019585 0.18 -2.6
4,281,598 + TX73_019585 0.22 -1.1
4,281,631 - TX73_019585 0.24 -1.6
4,281,648 - TX73_019585 0.25 -2.0
4,281,659 - TX73_019585 0.26 +0.4
4,281,697 + TX73_019585 0.28 -0.1
4,281,713 + TX73_019585 0.29 +0.0
4,281,715 - TX73_019585 0.29 -2.0
4,281,733 + TX73_019585 0.31 -1.0
4,281,733 + TX73_019585 0.31 -1.4
4,281,744 - TX73_019585 0.31 -0.7
4,281,746 - TX73_019585 0.32 +0.6
4,281,748 + TX73_019585 0.32 -3.0
4,281,753 + TX73_019585 0.32 +0.1
4,281,764 - TX73_019585 0.33 -1.0
4,281,853 - TX73_019585 0.39 -1.0
4,281,866 - TX73_019585 0.40 +0.4
4,281,866 - TX73_019585 0.40 -1.2
4,281,872 + TX73_019585 0.40 -2.8
4,281,872 + TX73_019585 0.40 -3.0
4,281,886 + TX73_019585 0.41 -1.4
4,281,886 - TX73_019585 0.41 -1.8
4,281,910 - TX73_019585 0.43 -1.9
4,281,910 - TX73_019585 0.43 -0.7
4,281,928 - TX73_019585 0.44 -0.2
4,282,048 - TX73_019585 0.52 -3.5
4,282,061 - TX73_019585 0.53 -1.3
4,282,084 - TX73_019585 0.54 +0.8
4,282,118 + TX73_019585 0.57 -3.4
4,282,131 - TX73_019585 0.58 -3.2
4,282,133 + TX73_019585 0.58 -3.5
4,282,133 + TX73_019585 0.58 -3.3
4,282,148 + TX73_019585 0.59 -3.5
4,282,156 - TX73_019585 0.59 -1.0
4,282,156 - TX73_019585 0.59 -0.7
4,282,156 - TX73_019585 0.59 -1.8
4,282,156 - TX73_019585 0.59 -1.1
4,282,196 - TX73_019585 0.62 -1.2
4,282,200 + TX73_019585 0.62 -0.6
4,282,237 + TX73_019585 0.65 -2.7
4,282,245 + TX73_019585 0.65 -0.8
4,282,258 + TX73_019585 0.66 -2.2
4,282,292 - TX73_019585 0.68 -4.2
4,282,325 + TX73_019585 0.71 -0.8
4,282,325 + TX73_019585 0.71 +0.3
4,282,370 - TX73_019585 0.74 +0.2
4,282,377 - TX73_019585 0.74 -1.5
4,282,407 + TX73_019585 0.76 -0.8
4,282,432 - TX73_019585 0.78 -0.2
4,282,433 - TX73_019585 0.78 -1.0
4,282,436 + TX73_019585 0.78 -1.0
4,282,542 + TX73_019585 0.85 -4.1
4,282,588 - TX73_019585 0.88 -1.0
4,282,622 + -1.1
4,282,657 + -1.9
4,282,676 - -1.8
4,282,683 - -2.4
4,282,683 - -0.1
4,282,704 + -1.5
4,282,717 - -0.8
4,282,725 - -1.1
4,282,780 + +0.9
4,282,828 - +0.5
4,282,862 - -0.0
4,282,868 + +2.3
4,282,909 - TX73_019590 0.11 -4.3
4,282,943 - TX73_019590 0.14 -1.9
4,282,951 + TX73_019590 0.15 -0.7
4,282,953 - TX73_019590 0.15 -0.8
4,282,979 - TX73_019590 0.17 -1.0
4,283,024 + TX73_019590 0.21 -2.5
4,283,036 - TX73_019590 0.22 -1.0
4,283,048 + TX73_019590 0.23 -1.7
4,283,069 - TX73_019590 0.25 -3.7
4,283,080 + TX73_019590 0.26 -3.5
4,283,080 + TX73_019590 0.26 -1.7
4,283,087 - TX73_019590 0.27 -0.6
4,283,088 - TX73_019590 0.27 -2.0
4,283,096 - TX73_019590 0.28 +0.3
4,283,098 - TX73_019590 0.28 -2.7
4,283,100 + TX73_019590 0.28 -3.9
4,283,106 - TX73_019590 0.29 -0.1
4,283,108 + TX73_019590 0.29 -1.8
4,283,116 - TX73_019590 0.29 -0.0
4,283,127 + TX73_019590 0.30 -1.2
4,283,127 + TX73_019590 0.30 -2.6
4,283,135 - TX73_019590 0.31 +0.5
4,283,146 + TX73_019590 0.32 -1.4
4,283,215 + TX73_019590 0.38 +0.4
4,283,227 - TX73_019590 0.39 -1.0
4,283,251 + TX73_019590 0.41 -0.3
4,283,261 + TX73_019590 0.42 -0.7
4,283,266 - TX73_019590 0.43 -1.2
4,283,277 - TX73_019590 0.44 +1.2
4,283,316 - TX73_019590 0.47 -1.2
4,283,327 + TX73_019590 0.48 +0.0
4,283,334 + TX73_019590 0.49 -3.8
4,283,342 - TX73_019590 0.49 -3.4
4,283,346 + TX73_019590 0.50 -3.0
4,283,349 - TX73_019590 0.50 -1.1
4,283,356 + TX73_019590 0.51 -3.3
4,283,356 + TX73_019590 0.51 -1.4
4,283,356 + TX73_019590 0.51 -1.9
4,283,433 + TX73_019590 0.57 -3.0
4,283,453 + TX73_019590 0.59 -0.2
4,283,453 + TX73_019590 0.59 -3.4
4,283,461 - TX73_019590 0.60 +0.3
4,283,484 + TX73_019590 0.62 +1.9
4,283,537 - TX73_019590 0.66 -0.6
4,283,542 - TX73_019590 0.67 -0.3
4,283,542 - TX73_019590 0.67 -3.8
4,283,549 - TX73_019590 0.68 -0.1
4,283,576 + TX73_019590 0.70 -0.5
4,283,581 + TX73_019590 0.70 -2.5
4,283,584 - TX73_019590 0.71 -0.4
4,283,587 - TX73_019590 0.71 +0.4
4,283,632 + TX73_019590 0.75 +0.0
4,283,716 + TX73_019590 0.82 -2.2
4,283,719 + TX73_019590 0.82 -1.8
4,283,724 - TX73_019590 0.83 -0.4
4,283,727 + TX73_019590 0.83 -3.4
4,283,727 - TX73_019590 0.83 -2.4
4,283,727 - TX73_019590 0.83 -0.5
4,283,730 - TX73_019590 0.83 -3.3
4,283,737 + TX73_019590 0.84 -0.4

Or see this region's nucleotide sequence