Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013465

Experiment: 4-Hydroxybenzoate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoate (C)
2,959,642	-		TX73_013455	0.49	-0.6
2,959,657	+		TX73_013455	0.55	-2.9
2,959,657	+		TX73_013455	0.55	-1.1
2,959,657	+		TX73_013455	0.55	+0.9
2,959,657	+		TX73_013455	0.55	+0.5
2,959,657	+		TX73_013455	0.55	-0.8
2,959,657	+		TX73_013455	0.55	+0.8
2,959,657	+		TX73_013455	0.55	-0.0
2,959,657	+		TX73_013455	0.55	-0.1
2,959,657	+		TX73_013455	0.55	+0.3
2,959,662	+		TX73_013455	0.57	+0.4
2,959,665	-		TX73_013455	0.58	+0.8
2,959,665	-		TX73_013455	0.58	+1.0
2,959,665	-		TX73_013455	0.58	+0.5
2,959,665	-		TX73_013455	0.58	-1.1
2,959,665	-		TX73_013455	0.58	+1.0
2,959,665	-		TX73_013455	0.58	+0.1
2,959,669	-		TX73_013455	0.60	+0.1
2,959,676	-		TX73_013455	0.62	+0.4
2,959,677	-		TX73_013455	0.63	+0.2
2,959,677	-		TX73_013455	0.63	-0.2
2,959,678	+		TX73_013455	0.63	+0.7
2,959,684	+		TX73_013455	0.66	-1.9
2,959,691	-		TX73_013455	0.68	+0.2
2,959,702	-		TX73_013455	0.72	-0.2
2,959,712	-		TX73_013455	0.76	-0.9
2,959,760	-				-1.8
2,959,762	+				-0.3
2,959,762	+				-0.9
2,959,768	-				+2.3
2,959,770	-				+1.3
2,959,770	-				+0.7
2,959,780	-				-1.5
2,959,787	-				+0.3
2,959,789	+				+1.1
2,959,789	+				-0.9
2,959,797	-				+0.8
2,959,818	+				+0.0
2,959,844	+				-0.0
2,959,844	+				+0.1
2,959,844	+				-0.1
2,959,844	+				+0.3
2,959,844	+				-0.7
2,959,844	+				+0.2
2,959,844	+				+0.4
2,959,849	+				+0.8
2,959,852	-				-0.8
2,959,852	-				-0.2
2,959,852	-				+1.3
2,959,852	-				+0.0
2,959,854	+				+0.0
2,959,887	+				+0.1
2,959,981	+				-1.9
2,960,030	+				-1.6
2,960,044	+				+0.4
2,960,049	+				-2.0
2,960,057	-				+0.7
2,960,064	+				-0.5
2,960,083	+				-3.7
2,960,083	+				-2.3
2,960,091	-				-2.7
2,960,104	-				-3.5
2,960,105	+				-0.6
2,960,113	-				-3.3
2,960,113	-				+0.6
2,960,615	+				+1.0
2,960,696	+		TX73_013465	0.10	-1.2
2,960,745	+		TX73_013465	0.19	+0.5
2,960,745	+		TX73_013465	0.19	-1.2
2,960,793	-		TX73_013465	0.28	+0.5
2,960,803	+		TX73_013465	0.29	-3.9
2,960,803	+		TX73_013465	0.29	-1.9
2,960,811	-		TX73_013465	0.31	-0.2
2,960,826	+		TX73_013465	0.34	+0.1
2,960,826	+		TX73_013465	0.34	+0.0
2,960,829	+		TX73_013465	0.34	-2.6
2,960,849	+		TX73_013465	0.38	-0.1
2,960,879	+		TX73_013465	0.43	-1.0
2,960,889	+		TX73_013465	0.45	-0.5
2,960,905	+		TX73_013465	0.48	+0.4
2,960,962	+		TX73_013465	0.58	-0.7
2,960,972	+		TX73_013465	0.59	-0.3
2,960,973	-		TX73_013465	0.60	-0.6
2,960,978	-		TX73_013465	0.60	-2.7
2,961,043	+		TX73_013465	0.72	-1.8
2,961,051	-		TX73_013465	0.73	+0.9
2,961,051	-		TX73_013465	0.73	-0.2
2,961,051	-		TX73_013465	0.73	+2.7
2,961,051	-		TX73_013465	0.73	+1.1
2,961,057	+		TX73_013465	0.74	+0.6
2,961,062	+		TX73_013465	0.75	+0.4
2,961,065	-		TX73_013465	0.76	+0.1
2,961,065	-		TX73_013465	0.76	-1.2
2,961,082	-		TX73_013465	0.79	-2.8
2,961,084	-		TX73_013465	0.79	+0.6
2,961,090	+		TX73_013465	0.80	-1.3
2,961,100	-		TX73_013465	0.82	-1.2
2,961,137	-		TX73_013465	0.89	+0.3
2,961,144	+				-1.6
2,961,166	-				+0.8
2,961,173	+				-0.1
2,961,173	+				+1.6
2,961,181	-				-3.5
2,961,182	-				-0.3
2,961,192	-				-3.7
2,961,195	+				-0.0
2,961,205	+				-0.4
2,961,213	-				+0.8
2,961,232	-				-0.7
2,961,267	-		TX73_013470	0.13	-1.0
2,961,271	-		TX73_013470	0.14	-1.3
2,961,278	+		TX73_013470	0.15	-1.0
2,961,286	-		TX73_013470	0.17	+0.6
2,961,296	-		TX73_013470	0.19	-1.1
2,961,319	-		TX73_013470	0.25	+0.1
2,961,381	+		TX73_013470	0.39	-0.2
2,961,391	-		TX73_013470	0.41	+0.3
2,961,411	-		TX73_013470	0.45	-0.9
2,961,415	+		TX73_013470	0.46	-0.1
2,961,415	+		TX73_013470	0.46	-2.6
2,961,418	+		TX73_013470	0.47	-2.8
2,961,423	-		TX73_013470	0.48	-0.8
2,961,433	-		TX73_013470	0.50	-0.1
2,961,455	+		TX73_013470	0.55	-0.3
2,961,500	+		TX73_013470	0.65	-0.2
2,961,507	+		TX73_013470	0.67	+1.3
2,961,541	-		TX73_013470	0.75	-0.3
2,961,542	+		TX73_013470	0.75	+0.3
2,961,559	+		TX73_013470	0.79	+0.2
2,961,579	-		TX73_013470	0.83	-1.1
2,961,588	+		TX73_013470	0.85	+0.8
2,961,604	+		TX73_013470	0.89	-2.0
2,961,612	-				-0.5
2,961,615	+				-0.9
2,961,633	-				+0.5
2,961,633	-				-1.1
2,961,647	+				-0.3
2,961,655	+				+1.0
2,961,655	+				+0.2
2,961,660	+				-1.0
2,961,663	-				-0.8
2,961,665	+				+0.5
2,961,665	+				+0.2
2,961,673	-				+1.1
2,961,673	-				-0.7
2,961,673	-				-1.6
2,961,673	-				-1.8
2,961,682	+		TX73_013475	0.11	-1.3
2,961,693	+		TX73_013475	0.14	+0.4
2,961,724	+		TX73_013475	0.20	-0.7
2,961,759	+		TX73_013475	0.28	+0.4
2,961,764	+		TX73_013475	0.29	-1.3
2,961,772	-		TX73_013475	0.31	+0.2
2,961,802	-		TX73_013475	0.37	-0.7
2,961,802	-		TX73_013475	0.37	-2.0
2,961,831	+		TX73_013475	0.43	-0.2
2,961,844	+		TX73_013475	0.46	-0.9
2,961,852	-		TX73_013475	0.48	-3.2
2,961,856	+		TX73_013475	0.49	-2.3
2,961,856	+		TX73_013475	0.49	+0.2
2,961,856	+		TX73_013475	0.49	-1.1
2,961,859	-		TX73_013475	0.49	+1.2
2,961,864	-		TX73_013475	0.50	+0.1
2,961,864	-		TX73_013475	0.50	-0.1
2,961,864	-		TX73_013475	0.50	-1.6
2,961,864	-		TX73_013475	0.50	-0.3
2,961,895	+		TX73_013475	0.57	-2.3
2,961,903	+		TX73_013475	0.59	+0.4
2,961,903	-		TX73_013475	0.59	+0.4
2,961,967	-		TX73_013475	0.72	-3.5
2,961,970	+		TX73_013475	0.73	+0.7
2,961,970	+		TX73_013475	0.73	+1.1
2,961,970	+		TX73_013475	0.73	-1.6
2,961,978	-		TX73_013475	0.75	+0.7
2,961,978	-		TX73_013475	0.75	+0.3
2,961,978	-		TX73_013475	0.75	-3.4
2,961,985	+		TX73_013475	0.76	-0.4
2,961,988	-		TX73_013475	0.77	-1.9
2,962,049	-		TX73_013475	0.90	+0.0
2,962,059	-				-0.4
2,962,098	-				-0.7
2,962,098	-				-2.0
2,962,105	+				+0.2
2,962,178	+				+0.4