Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003975

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003970 and TX73_003975 are separated by 15 nucleotidesTX73_003975 and TX73_003980 overlap by 2 nucleotides TX73_003970: TX73_003970 - hypothetical protein, at 853,003 to 853,824 _003970 TX73_003975: TX73_003975 - IS3-like element ISRpa2 family transposase, at 853,840 to 855,023 _003975 TX73_003980: TX73_003980 - pentapeptide repeat-containing protein, at 855,022 to 856,413 _003980 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 852.840 kb on + strandat 852.854 kb on + strandat 852.862 kb on - strandat 852.897 kb on - strandat 852.980 kb on + strandat 852.988 kb on - strandat 852.988 kb on - strandat 852.990 kb on + strandat 852.996 kb on - strandat 853.008 kb on - strandat 853.035 kb on - strandat 853.158 kb on + strand, within TX73_003970at 853.286 kb on - strand, within TX73_003970at 853.348 kb on - strand, within TX73_003970at 853.410 kb on + strand, within TX73_003970at 853.415 kb on + strand, within TX73_003970at 853.551 kb on - strand, within TX73_003970at 853.571 kb on + strand, within TX73_003970at 853.578 kb on - strand, within TX73_003970at 853.663 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.738 kb on + strand, within TX73_003970at 853.761 kb on - strandat 853.769 kb on - strandat 853.774 kb on + strandat 853.779 kb on - strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.855 kb on - strandat 855.103 kb on - strandat 855.108 kb on - strandat 855.110 kb on + strandat 855.118 kb on - strandat 855.118 kb on - strandat 855.170 kb on + strand, within TX73_003980at 855.172 kb on - strand, within TX73_003980at 855.178 kb on - strand, within TX73_003980at 855.178 kb on - strand, within TX73_003980at 855.214 kb on + strand, within TX73_003980at 855.231 kb on + strand, within TX73_003980at 855.238 kb on + strand, within TX73_003980at 855.239 kb on - strand, within TX73_003980at 855.246 kb on - strand, within TX73_003980at 855.246 kb on - strand, within TX73_003980at 855.254 kb on + strand, within TX73_003980at 855.258 kb on + strand, within TX73_003980at 855.269 kb on - strand, within TX73_003980at 855.269 kb on - strand, within TX73_003980at 855.274 kb on + strand, within TX73_003980at 855.274 kb on + strand, within TX73_003980at 855.276 kb on - strand, within TX73_003980at 855.314 kb on + strand, within TX73_003980at 855.314 kb on + strand, within TX73_003980at 855.322 kb on - strand, within TX73_003980at 855.322 kb on - strand, within TX73_003980at 855.335 kb on + strand, within TX73_003980at 855.337 kb on + strand, within TX73_003980at 855.343 kb on - strand, within TX73_003980at 855.352 kb on + strand, within TX73_003980at 855.357 kb on + strand, within TX73_003980at 855.357 kb on + strand, within TX73_003980at 855.360 kb on - strand, within TX73_003980at 855.360 kb on - strand, within TX73_003980at 855.362 kb on + strand, within TX73_003980at 855.382 kb on - strand, within TX73_003980at 855.409 kb on + strand, within TX73_003980at 855.426 kb on - strand, within TX73_003980at 855.454 kb on + strand, within TX73_003980at 855.464 kb on + strand, within TX73_003980at 855.488 kb on - strand, within TX73_003980at 855.492 kb on - strand, within TX73_003980at 855.569 kb on + strand, within TX73_003980at 855.587 kb on - strand, within TX73_003980at 855.645 kb on + strand, within TX73_003980at 855.679 kb on + strand, within TX73_003980at 855.704 kb on - strand, within TX73_003980at 855.769 kb on + strand, within TX73_003980at 855.824 kb on + strand, within TX73_003980at 855.824 kb on + strand, within TX73_003980at 855.913 kb on - strand, within TX73_003980at 855.941 kb on + strand, within TX73_003980

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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852,840 + +0.5
852,854 + -1.8
852,862 - +1.1
852,897 - -0.4
852,980 + +0.7
852,988 - -0.2
852,988 - +1.7
852,990 + -0.5
852,996 - +0.1
853,008 - -1.0
853,035 - +1.2
853,158 + TX73_003970 0.19 -0.3
853,286 - TX73_003970 0.34 +1.4
853,348 - TX73_003970 0.42 -3.0
853,410 + TX73_003970 0.50 +0.8
853,415 + TX73_003970 0.50 -0.4
853,551 - TX73_003970 0.67 +1.0
853,571 + TX73_003970 0.69 +0.2
853,578 - TX73_003970 0.70 -0.1
853,663 + TX73_003970 0.80 +1.2
853,670 + TX73_003970 0.81 +1.9
853,670 + TX73_003970 0.81 +0.3
853,678 - TX73_003970 0.82 -0.7
853,678 - TX73_003970 0.82 -0.5
853,678 - TX73_003970 0.82 +1.1
853,738 + TX73_003970 0.89 +0.2
853,761 - +1.8
853,769 - -2.9
853,774 + -1.9
853,779 - +1.4
853,793 + -1.0
853,793 + -0.8
853,855 - +0.6
855,103 - -0.0
855,108 - +0.1
855,110 + +1.3
855,118 - +0.0
855,118 - +0.2
855,170 + TX73_003980 0.11 +1.4
855,172 - TX73_003980 0.11 -0.3
855,178 - TX73_003980 0.11 -0.0
855,178 - TX73_003980 0.11 +0.8
855,214 + TX73_003980 0.14 -1.0
855,231 + TX73_003980 0.15 -0.6
855,238 + TX73_003980 0.16 -0.9
855,239 - TX73_003980 0.16 +1.0
855,246 - TX73_003980 0.16 -1.5
855,246 - TX73_003980 0.16 -1.2
855,254 + TX73_003980 0.17 -2.1
855,258 + TX73_003980 0.17 +0.2
855,269 - TX73_003980 0.18 -0.4
855,269 - TX73_003980 0.18 +0.5
855,274 + TX73_003980 0.18 +0.9
855,274 + TX73_003980 0.18 +1.0
855,276 - TX73_003980 0.18 -0.0
855,314 + TX73_003980 0.21 +2.4
855,314 + TX73_003980 0.21 +1.3
855,322 - TX73_003980 0.22 -0.0
855,322 - TX73_003980 0.22 -1.8
855,335 + TX73_003980 0.22 -1.6
855,337 + TX73_003980 0.23 -0.6
855,343 - TX73_003980 0.23 -1.3
855,352 + TX73_003980 0.24 -1.4
855,357 + TX73_003980 0.24 +0.1
855,357 + TX73_003980 0.24 -1.4
855,360 - TX73_003980 0.24 -1.2
855,360 - TX73_003980 0.24 +0.7
855,362 + TX73_003980 0.24 +0.8
855,382 - TX73_003980 0.26 -1.6
855,409 + TX73_003980 0.28 -0.1
855,426 - TX73_003980 0.29 -0.0
855,454 + TX73_003980 0.31 -3.2
855,464 + TX73_003980 0.32 +0.6
855,488 - TX73_003980 0.33 -1.2
855,492 - TX73_003980 0.34 -0.2
855,569 + TX73_003980 0.39 +0.5
855,587 - TX73_003980 0.41 +0.2
855,645 + TX73_003980 0.45 +0.1
855,679 + TX73_003980 0.47 +0.4
855,704 - TX73_003980 0.49 +0.2
855,769 + TX73_003980 0.54 -1.6
855,824 + TX73_003980 0.58 -1.9
855,824 + TX73_003980 0.58 -0.1
855,913 - TX73_003980 0.64 +0.8
855,941 + TX73_003980 0.66 +0.3

Or see this region's nucleotide sequence