Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003960

Experiment: 4-Hydroxybenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003955 and TX73_003960 are separated by 105 nucleotidesTX73_003960 and TX73_003965 are separated by 267 nucleotides TX73_003955: TX73_003955 - Crp/Fnr family transcriptional regulator, at 849,706 to 850,410 _003955 TX73_003960: TX73_003960 - sensor domain-containing diguanylate cyclase, at 850,516 to 851,457 _003960 TX73_003965: TX73_003965 - IS481 family transposase, at 851,725 to 852,751 _003965 Position (kb) 850 851 852Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 849.550 kb on + strandat 849.682 kb on - strandat 849.708 kb on + strandat 849.718 kb on + strandat 849.721 kb on - strandat 849.726 kb on - strandat 849.733 kb on + strandat 849.794 kb on + strand, within TX73_003955at 849.810 kb on + strand, within TX73_003955at 849.829 kb on + strand, within TX73_003955at 849.829 kb on + strand, within TX73_003955at 849.829 kb on - strand, within TX73_003955at 849.865 kb on - strand, within TX73_003955at 849.895 kb on - strand, within TX73_003955at 849.897 kb on + strand, within TX73_003955at 849.905 kb on - strand, within TX73_003955at 849.951 kb on + strand, within TX73_003955at 849.951 kb on + strand, within TX73_003955at 849.954 kb on - strand, within TX73_003955at 849.959 kb on - strand, within TX73_003955at 849.982 kb on + strand, within TX73_003955at 849.988 kb on + strand, within TX73_003955at 850.013 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.018 kb on + strand, within TX73_003955at 850.021 kb on - strand, within TX73_003955at 850.026 kb on - strand, within TX73_003955at 850.046 kb on - strand, within TX73_003955at 850.057 kb on + strand, within TX73_003955at 850.064 kb on + strand, within TX73_003955at 850.072 kb on - strand, within TX73_003955at 850.119 kb on + strand, within TX73_003955at 850.156 kb on + strand, within TX73_003955at 850.157 kb on - strand, within TX73_003955at 850.200 kb on - strand, within TX73_003955at 850.209 kb on - strand, within TX73_003955at 850.209 kb on - strand, within TX73_003955at 850.253 kb on + strand, within TX73_003955at 850.261 kb on - strand, within TX73_003955at 850.288 kb on - strand, within TX73_003955at 850.300 kb on - strand, within TX73_003955at 850.322 kb on - strand, within TX73_003955at 850.326 kb on + strand, within TX73_003955at 850.344 kb on + strandat 850.345 kb on + strandat 850.395 kb on + strandat 850.406 kb on + strandat 850.478 kb on - strandat 850.479 kb on - strandat 850.487 kb on - strandat 850.487 kb on - strandat 850.487 kb on - strandat 850.499 kb on - strandat 850.527 kb on - strandat 850.582 kb on - strandat 850.644 kb on - strand, within TX73_003960at 850.749 kb on - strand, within TX73_003960at 850.765 kb on - strand, within TX73_003960at 850.774 kb on + strand, within TX73_003960at 850.826 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.859 kb on - strand, within TX73_003960at 850.878 kb on - strand, within TX73_003960at 850.896 kb on + strand, within TX73_003960at 850.904 kb on - strand, within TX73_003960at 850.919 kb on - strand, within TX73_003960at 850.926 kb on + strand, within TX73_003960at 850.934 kb on - strand, within TX73_003960at 850.934 kb on - strand, within TX73_003960at 850.946 kb on - strand, within TX73_003960at 850.973 kb on - strand, within TX73_003960at 850.987 kb on - strand, within TX73_003960at 850.989 kb on + strand, within TX73_003960at 851.002 kb on - strand, within TX73_003960at 851.010 kb on - strand, within TX73_003960at 851.020 kb on + strand, within TX73_003960at 851.028 kb on - strand, within TX73_003960at 851.043 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.071 kb on - strand, within TX73_003960at 851.073 kb on + strand, within TX73_003960at 851.073 kb on + strand, within TX73_003960at 851.079 kb on - strand, within TX73_003960at 851.086 kb on - strand, within TX73_003960at 851.091 kb on - strand, within TX73_003960at 851.115 kb on + strand, within TX73_003960at 851.115 kb on + strand, within TX73_003960at 851.139 kb on - strand, within TX73_003960at 851.153 kb on + strand, within TX73_003960at 851.161 kb on - strand, within TX73_003960at 851.163 kb on + strand, within TX73_003960at 851.192 kb on + strand, within TX73_003960at 851.211 kb on + strand, within TX73_003960at 851.219 kb on - strand, within TX73_003960at 851.257 kb on + strand, within TX73_003960at 851.257 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.282 kb on - strand, within TX73_003960at 851.315 kb on + strand, within TX73_003960at 851.333 kb on + strand, within TX73_003960at 851.338 kb on + strand, within TX73_003960at 851.341 kb on - strand, within TX73_003960at 851.385 kb on + strandat 851.385 kb on + strandat 851.414 kb on + strandat 851.416 kb on - strandat 851.440 kb on - strandat 851.440 kb on - strandat 851.442 kb on + strandat 851.450 kb on - strandat 851.452 kb on + strandat 851.460 kb on - strandat 851.460 kb on - strandat 851.488 kb on - strandat 851.510 kb on - strandat 851.512 kb on + strandat 851.524 kb on + strandat 851.525 kb on + strandat 851.532 kb on - strandat 851.533 kb on - strandat 851.533 kb on - strandat 851.568 kb on - strandat 851.603 kb on - strandat 851.645 kb on - strandat 851.645 kb on - strandat 851.646 kb on - strandat 851.675 kb on + strandat 851.693 kb on + strandat 851.712 kb on + strandat 851.744 kb on - strandat 851.786 kb on - strandat 851.796 kb on + strandat 851.818 kb on + strandat 851.818 kb on + strandat 851.825 kb on - strandat 851.839 kb on + strand, within TX73_003965at 851.857 kb on - strand, within TX73_003965at 851.869 kb on - strand, within TX73_003965at 851.883 kb on - strand, within TX73_003965at 851.883 kb on - strand, within TX73_003965at 851.884 kb on - strand, within TX73_003965at 851.916 kb on - strand, within TX73_003965at 851.921 kb on + strand, within TX73_003965at 851.922 kb on + strand, within TX73_003965at 851.947 kb on + strand, within TX73_003965at 851.952 kb on + strand, within TX73_003965at 851.952 kb on - strand, within TX73_003965at 851.971 kb on + strand, within TX73_003965at 851.986 kb on - strand, within TX73_003965at 851.987 kb on - strand, within TX73_003965at 852.009 kb on + strand, within TX73_003965at 852.017 kb on - strand, within TX73_003965at 852.057 kb on + strand, within TX73_003965at 852.061 kb on + strand, within TX73_003965at 852.092 kb on - strand, within TX73_003965at 852.113 kb on - strand, within TX73_003965at 852.124 kb on + strand, within TX73_003965at 852.151 kb on + strand, within TX73_003965at 852.159 kb on - strand, within TX73_003965at 852.176 kb on - strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.223 kb on - strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.260 kb on - strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.319 kb on + strand, within TX73_003965at 852.386 kb on + strand, within TX73_003965at 852.394 kb on - strand, within TX73_003965at 852.420 kb on + strand, within TX73_003965at 852.439 kb on + strand, within TX73_003965at 852.447 kb on + strand, within TX73_003965at 852.447 kb on - strand, within TX73_003965

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C)
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849,550 + +1.0
849,682 - +0.7
849,708 + +0.0
849,718 + +1.4
849,721 - -1.0
849,726 - +0.9
849,733 + +0.0
849,794 + TX73_003955 0.12 -0.7
849,810 + TX73_003955 0.15 -0.0
849,829 + TX73_003955 0.17 +0.5
849,829 + TX73_003955 0.17 -0.6
849,829 - TX73_003955 0.17 -0.5
849,865 - TX73_003955 0.23 +0.7
849,895 - TX73_003955 0.27 +0.2
849,897 + TX73_003955 0.27 +0.4
849,905 - TX73_003955 0.28 +0.1
849,951 + TX73_003955 0.35 +1.1
849,951 + TX73_003955 0.35 +0.6
849,954 - TX73_003955 0.35 +0.5
849,959 - TX73_003955 0.36 +2.9
849,982 + TX73_003955 0.39 +0.5
849,988 + TX73_003955 0.40 +1.3
850,013 + TX73_003955 0.44 -0.4
850,018 + TX73_003955 0.44 +0.4
850,018 + TX73_003955 0.44 +0.3
850,018 + TX73_003955 0.44 +1.1
850,021 - TX73_003955 0.45 -2.4
850,026 - TX73_003955 0.45 -0.2
850,046 - TX73_003955 0.48 -0.6
850,057 + TX73_003955 0.50 -0.1
850,064 + TX73_003955 0.51 -0.1
850,072 - TX73_003955 0.52 +0.9
850,119 + TX73_003955 0.59 -0.1
850,156 + TX73_003955 0.64 -0.8
850,157 - TX73_003955 0.64 -0.1
850,200 - TX73_003955 0.70 -0.9
850,209 - TX73_003955 0.71 +1.3
850,209 - TX73_003955 0.71 +0.8
850,253 + TX73_003955 0.78 +0.3
850,261 - TX73_003955 0.79 +0.5
850,288 - TX73_003955 0.83 +1.2
850,300 - TX73_003955 0.84 +1.5
850,322 - TX73_003955 0.87 -1.2
850,326 + TX73_003955 0.88 -0.0
850,344 + -2.3
850,345 + -0.0
850,395 + +0.2
850,406 + -0.2
850,478 - -0.3
850,479 - -0.0
850,487 - -0.7
850,487 - +0.6
850,487 - +0.6
850,499 - -0.1
850,527 - +0.5
850,582 - +0.8
850,644 - TX73_003960 0.14 -4.1
850,749 - TX73_003960 0.25 -0.3
850,765 - TX73_003960 0.26 -0.1
850,774 + TX73_003960 0.27 +1.2
850,826 + TX73_003960 0.33 -2.5
850,851 + TX73_003960 0.36 +0.6
850,851 + TX73_003960 0.36 -1.1
850,851 + TX73_003960 0.36 +0.9
850,859 - TX73_003960 0.36 -0.1
850,878 - TX73_003960 0.38 -3.0
850,896 + TX73_003960 0.40 -3.3
850,904 - TX73_003960 0.41 -0.7
850,919 - TX73_003960 0.43 -0.3
850,926 + TX73_003960 0.44 -1.1
850,934 - TX73_003960 0.44 -0.4
850,934 - TX73_003960 0.44 -0.3
850,946 - TX73_003960 0.46 +0.4
850,973 - TX73_003960 0.49 -0.8
850,987 - TX73_003960 0.50 +0.1
850,989 + TX73_003960 0.50 +0.7
851,002 - TX73_003960 0.52 -0.7
851,010 - TX73_003960 0.52 +0.1
851,020 + TX73_003960 0.54 +0.1
851,028 - TX73_003960 0.54 +0.4
851,043 + TX73_003960 0.56 +1.0
851,063 + TX73_003960 0.58 -3.5
851,063 + TX73_003960 0.58 +0.0
851,063 + TX73_003960 0.58 +0.7
851,071 - TX73_003960 0.59 +1.0
851,073 + TX73_003960 0.59 +0.2
851,073 + TX73_003960 0.59 -0.8
851,079 - TX73_003960 0.60 +0.3
851,086 - TX73_003960 0.61 -0.8
851,091 - TX73_003960 0.61 +0.2
851,115 + TX73_003960 0.64 +0.9
851,115 + TX73_003960 0.64 -0.0
851,139 - TX73_003960 0.66 +0.7
851,153 + TX73_003960 0.68 -0.3
851,161 - TX73_003960 0.68 +0.6
851,163 + TX73_003960 0.69 -0.2
851,192 + TX73_003960 0.72 -0.8
851,211 + TX73_003960 0.74 -0.4
851,219 - TX73_003960 0.75 -0.1
851,257 + TX73_003960 0.79 -0.3
851,257 + TX73_003960 0.79 -0.6
851,274 + TX73_003960 0.80 -0.2
851,274 + TX73_003960 0.80 -0.4
851,274 + TX73_003960 0.80 -0.5
851,282 - TX73_003960 0.81 -1.2
851,315 + TX73_003960 0.85 -0.2
851,333 + TX73_003960 0.87 -0.0
851,338 + TX73_003960 0.87 +0.3
851,341 - TX73_003960 0.88 -1.5
851,385 + +1.1
851,385 + +2.3
851,414 + +0.1
851,416 - -2.2
851,440 - -0.3
851,440 - -0.2
851,442 + +0.7
851,450 - +0.3
851,452 + -0.0
851,460 - +0.8
851,460 - -0.5
851,488 - +0.0
851,510 - -1.2
851,512 + -0.4
851,524 + -1.4
851,525 + +0.4
851,532 - -0.4
851,533 - -0.2
851,533 - -1.1
851,568 - +0.3
851,603 - +0.9
851,645 - -0.3
851,645 - +0.3
851,646 - -0.9
851,675 + +0.6
851,693 + -3.7
851,712 + -1.0
851,744 - -1.4
851,786 - +0.1
851,796 + +0.3
851,818 + +0.2
851,818 + -0.3
851,825 - -0.4
851,839 + TX73_003965 0.11 -1.2
851,857 - TX73_003965 0.13 -1.3
851,869 - TX73_003965 0.14 -2.3
851,883 - TX73_003965 0.15 -0.9
851,883 - TX73_003965 0.15 +0.1
851,884 - TX73_003965 0.15 +0.9
851,916 - TX73_003965 0.19 +1.0
851,921 + TX73_003965 0.19 +0.2
851,922 + TX73_003965 0.19 -0.1
851,947 + TX73_003965 0.22 -0.1
851,952 + TX73_003965 0.22 -0.1
851,952 - TX73_003965 0.22 -0.0
851,971 + TX73_003965 0.24 -3.1
851,986 - TX73_003965 0.25 +0.3
851,987 - TX73_003965 0.26 +0.9
852,009 + TX73_003965 0.28 +0.9
852,017 - TX73_003965 0.28 +1.1
852,057 + TX73_003965 0.32 -1.2
852,061 + TX73_003965 0.33 +0.2
852,092 - TX73_003965 0.36 -1.0
852,113 - TX73_003965 0.38 +0.6
852,124 + TX73_003965 0.39 -0.2
852,151 + TX73_003965 0.41 -0.5
852,159 - TX73_003965 0.42 +0.9
852,176 - TX73_003965 0.44 -0.6
852,208 + TX73_003965 0.47 -0.3
852,208 + TX73_003965 0.47 +0.2
852,208 + TX73_003965 0.47 -0.5
852,208 + TX73_003965 0.47 -1.1
852,208 + TX73_003965 0.47 +1.2
852,208 + TX73_003965 0.47 -1.5
852,208 + TX73_003965 0.47 +0.5
852,216 - TX73_003965 0.48 -0.0
852,216 - TX73_003965 0.48 -2.8
852,223 - TX73_003965 0.48 +0.5
852,252 + TX73_003965 0.51 -1.0
852,252 + TX73_003965 0.51 +0.3
852,260 - TX73_003965 0.52 -0.6
852,277 + TX73_003965 0.54 +1.2
852,277 + TX73_003965 0.54 +0.8
852,285 - TX73_003965 0.55 -0.4
852,285 - TX73_003965 0.55 +1.4
852,319 + TX73_003965 0.58 +0.6
852,386 + TX73_003965 0.64 -0.0
852,394 - TX73_003965 0.65 -0.2
852,420 + TX73_003965 0.68 +0.2
852,439 + TX73_003965 0.70 -0.9
852,447 + TX73_003965 0.70 +0.3
852,447 - TX73_003965 0.70 +0.5

Or see this region's nucleotide sequence