Experiment: 4-Hydroxybenzoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003565 and TX73_003570 are separated by 20 nucleotides TX73_003570 and TX73_003575 overlap by 1 nucleotides TX73_003575 and TX73_003580 overlap by 8 nucleotides TX73_003580 and TX73_003585 overlap by 4 nucleotides
TX73_003565: TX73_003565 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 764,331 to 765,485
_003565
TX73_003570: TX73_003570 - phosphonate C-P lyase system protein PhnL, at 765,506 to 766,216
_003570
TX73_003575: TX73_003575 - phosphonate C-P lyase system protein PhnK, at 766,216 to 767,034
_003575
TX73_003580: TX73_003580 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 767,027 to 767,905
_003580
TX73_003585: TX73_003585 - carbon-phosphorus lyase complex subunit PhnI, at 767,902 to 768,999
_003585
Position (kb) 766
767
768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 765.270 kb on - strand, within TX73_003565 at 765.286 kb on + strand, within TX73_003565 at 765.307 kb on + strand, within TX73_003565 at 765.325 kb on - strand, within TX73_003565 at 765.347 kb on - strand, within TX73_003565 at 765.409 kb on + strand at 765.435 kb on + strand at 765.451 kb on + strand at 765.468 kb on - strand at 765.488 kb on - strand at 765.532 kb on + strand at 765.599 kb on + strand, within TX73_003570 at 765.599 kb on + strand, within TX73_003570 at 765.606 kb on + strand, within TX73_003570 at 765.614 kb on - strand, within TX73_003570 at 765.715 kb on - strand, within TX73_003570 at 765.728 kb on + strand, within TX73_003570 at 765.738 kb on - strand, within TX73_003570 at 765.765 kb on + strand, within TX73_003570 at 765.791 kb on - strand, within TX73_003570 at 765.839 kb on + strand, within TX73_003570 at 765.847 kb on + strand, within TX73_003570 at 765.966 kb on - strand, within TX73_003570 at 765.979 kb on - strand, within TX73_003570 at 766.013 kb on - strand, within TX73_003570 at 766.079 kb on - strand, within TX73_003570 at 766.110 kb on - strand, within TX73_003570 at 766.177 kb on - strand at 766.195 kb on - strand at 766.206 kb on + strand at 766.206 kb on + strand at 766.290 kb on + strand at 766.335 kb on - strand, within TX73_003575 at 766.366 kb on + strand, within TX73_003575 at 766.373 kb on - strand, within TX73_003575 at 766.415 kb on + strand, within TX73_003575 at 766.429 kb on + strand, within TX73_003575 at 766.437 kb on - strand, within TX73_003575 at 766.442 kb on - strand, within TX73_003575 at 766.480 kb on + strand, within TX73_003575 at 766.498 kb on + strand, within TX73_003575 at 766.508 kb on + strand, within TX73_003575 at 766.574 kb on + strand, within TX73_003575 at 766.620 kb on - strand, within TX73_003575 at 766.705 kb on + strand, within TX73_003575 at 766.710 kb on - strand, within TX73_003575 at 766.712 kb on + strand, within TX73_003575 at 766.717 kb on + strand, within TX73_003575 at 766.759 kb on - strand, within TX73_003575 at 766.865 kb on + strand, within TX73_003575 at 766.885 kb on + strand, within TX73_003575 at 766.893 kb on - strand, within TX73_003575 at 767.000 kb on - strand at 767.080 kb on - strand at 767.175 kb on - strand, within TX73_003580 at 767.180 kb on - strand, within TX73_003580 at 767.313 kb on - strand, within TX73_003580 at 767.401 kb on - strand, within TX73_003580 at 767.401 kb on - strand, within TX73_003580 at 767.401 kb on - strand, within TX73_003580 at 767.450 kb on + strand, within TX73_003580 at 767.492 kb on + strand, within TX73_003580 at 767.503 kb on + strand, within TX73_003580 at 767.503 kb on + strand, within TX73_003580 at 767.503 kb on + strand, within TX73_003580 at 767.511 kb on - strand, within TX73_003580 at 767.511 kb on - strand, within TX73_003580 at 767.551 kb on - strand, within TX73_003580 at 767.674 kb on + strand, within TX73_003580 at 767.715 kb on - strand, within TX73_003580 at 767.744 kb on + strand, within TX73_003580 at 767.744 kb on + strand, within TX73_003580 at 767.746 kb on + strand, within TX73_003580 at 767.749 kb on + strand, within TX73_003580 at 767.754 kb on - strand, within TX73_003580 at 767.754 kb on - strand, within TX73_003580 at 767.768 kb on + strand, within TX73_003580 at 767.776 kb on - strand, within TX73_003580 at 767.777 kb on + strand, within TX73_003580 at 767.920 kb on - strand at 767.930 kb on - strand at 767.948 kb on + strand at 767.956 kb on - strand at 768.028 kb on + strand, within TX73_003585
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C) remove 765,270 - TX73_003565 0.81 +1.3 765,286 + TX73_003565 0.83 -0.5 765,307 + TX73_003565 0.85 -1.6 765,325 - TX73_003565 0.86 +1.0 765,347 - TX73_003565 0.88 +0.0 765,409 + +0.7 765,435 + -0.1 765,451 + +0.6 765,468 - -0.7 765,488 - +0.1 765,532 + +0.9 765,599 + TX73_003570 0.13 +0.2 765,599 + TX73_003570 0.13 -0.2 765,606 + TX73_003570 0.14 -1.0 765,614 - TX73_003570 0.15 +0.7 765,715 - TX73_003570 0.29 +0.6 765,728 + TX73_003570 0.31 +1.3 765,738 - TX73_003570 0.33 +0.6 765,765 + TX73_003570 0.36 +1.8 765,791 - TX73_003570 0.40 -0.1 765,839 + TX73_003570 0.47 -0.6 765,847 + TX73_003570 0.48 -1.8 765,966 - TX73_003570 0.65 +1.7 765,979 - TX73_003570 0.67 -0.3 766,013 - TX73_003570 0.71 +0.3 766,079 - TX73_003570 0.81 -0.8 766,110 - TX73_003570 0.85 -1.6 766,177 - -0.7 766,195 - -1.3 766,206 + -0.4 766,206 + +1.2 766,290 + -0.4 766,335 - TX73_003575 0.15 -0.9 766,366 + TX73_003575 0.18 +0.9 766,373 - TX73_003575 0.19 -0.2 766,415 + TX73_003575 0.24 -0.6 766,429 + TX73_003575 0.26 -2.9 766,437 - TX73_003575 0.27 +0.2 766,442 - TX73_003575 0.28 -2.5 766,480 + TX73_003575 0.32 -1.5 766,498 + TX73_003575 0.34 +1.3 766,508 + TX73_003575 0.36 -0.9 766,574 + TX73_003575 0.44 -1.1 766,620 - TX73_003575 0.49 -1.2 766,705 + TX73_003575 0.60 +1.0 766,710 - TX73_003575 0.60 -0.9 766,712 + TX73_003575 0.61 -3.2 766,717 + TX73_003575 0.61 -1.4 766,759 - TX73_003575 0.66 +1.8 766,865 + TX73_003575 0.79 +1.3 766,885 + TX73_003575 0.82 +1.9 766,893 - TX73_003575 0.83 -0.2 767,000 - -0.3 767,080 - +1.2 767,175 - TX73_003580 0.17 +0.4 767,180 - TX73_003580 0.17 -3.9 767,313 - TX73_003580 0.33 -2.5 767,401 - TX73_003580 0.43 +1.1 767,401 - TX73_003580 0.43 -2.4 767,401 - TX73_003580 0.43 +1.0 767,450 + TX73_003580 0.48 -2.2 767,492 + TX73_003580 0.53 -0.9 767,503 + TX73_003580 0.54 +0.5 767,503 + TX73_003580 0.54 -0.1 767,503 + TX73_003580 0.54 +0.5 767,511 - TX73_003580 0.55 +0.3 767,511 - TX73_003580 0.55 +0.0 767,551 - TX73_003580 0.60 -0.0 767,674 + TX73_003580 0.74 +0.4 767,715 - TX73_003580 0.78 +1.6 767,744 + TX73_003580 0.82 -0.4 767,744 + TX73_003580 0.82 -2.6 767,746 + TX73_003580 0.82 -0.9 767,749 + TX73_003580 0.82 +1.4 767,754 - TX73_003580 0.83 +1.0 767,754 - TX73_003580 0.83 -0.2 767,768 + TX73_003580 0.84 +0.5 767,776 - TX73_003580 0.85 -0.9 767,777 + TX73_003580 0.85 +1.3 767,920 - +0.6 767,930 - +0.3 767,948 + +0.7 767,956 - -0.4 768,028 + TX73_003585 0.11 +1.2
Or see this region's nucleotide sequence