Experiment: 4-Hydroxybenzoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002985 and TX73_002990 are separated by 269 nucleotides TX73_002990 and TX73_002995 are separated by 182 nucleotides TX73_002995 and TX73_003000 are separated by 95 nucleotides
TX73_002985: TX73_002985 - SprT family zinc-dependent metalloprotease, at 639,004 to 639,837
_002985
TX73_002990: TX73_002990 - transglycosylase domain-containing protein, at 640,107 to 642,326
_002990
TX73_002995: TX73_002995 - hypothetical protein, at 642,509 to 642,760
_002995
TX73_003000: TX73_003000 - hypothetical protein, at 642,856 to 643,068
_003000
Position (kb) 640
641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.111 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.123 kb on + strand, within TX73_002985 at 639.131 kb on - strand, within TX73_002985 at 639.134 kb on + strand, within TX73_002985 at 639.137 kb on - strand, within TX73_002985 at 639.142 kb on - strand, within TX73_002985 at 639.164 kb on - strand, within TX73_002985 at 639.166 kb on - strand, within TX73_002985 at 639.170 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.235 kb on + strand, within TX73_002985 at 639.267 kb on - strand, within TX73_002985 at 639.288 kb on + strand, within TX73_002985 at 639.288 kb on + strand, within TX73_002985 at 639.296 kb on - strand, within TX73_002985 at 639.296 kb on - strand, within TX73_002985 at 639.298 kb on + strand, within TX73_002985 at 639.313 kb on + strand, within TX73_002985 at 639.342 kb on + strand, within TX73_002985 at 639.348 kb on + strand, within TX73_002985 at 639.348 kb on + strand, within TX73_002985 at 639.353 kb on + strand, within TX73_002985 at 639.356 kb on + strand, within TX73_002985 at 639.361 kb on + strand, within TX73_002985 at 639.364 kb on - strand, within TX73_002985 at 639.374 kb on + strand, within TX73_002985 at 639.389 kb on - strand, within TX73_002985 at 639.389 kb on - strand, within TX73_002985 at 639.415 kb on + strand, within TX73_002985 at 639.423 kb on - strand, within TX73_002985 at 639.423 kb on - strand, within TX73_002985 at 639.425 kb on - strand, within TX73_002985 at 639.427 kb on + strand, within TX73_002985 at 639.486 kb on - strand, within TX73_002985 at 639.506 kb on + strand, within TX73_002985 at 639.525 kb on + strand, within TX73_002985 at 639.533 kb on - strand, within TX73_002985 at 639.533 kb on - strand, within TX73_002985 at 639.563 kb on + strand, within TX73_002985 at 639.563 kb on + strand, within TX73_002985 at 639.572 kb on - strand, within TX73_002985 at 639.605 kb on + strand, within TX73_002985 at 639.605 kb on + strand, within TX73_002985 at 639.610 kb on + strand, within TX73_002985 at 639.612 kb on + strand, within TX73_002985 at 639.613 kb on - strand, within TX73_002985 at 639.666 kb on + strand, within TX73_002985 at 639.673 kb on - strand, within TX73_002985 at 639.699 kb on - strand, within TX73_002985 at 639.730 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.738 kb on - strand, within TX73_002985 at 639.743 kb on - strand, within TX73_002985 at 639.743 kb on - strand, within TX73_002985 at 639.748 kb on - strand, within TX73_002985 at 639.756 kb on + strand at 639.759 kb on - strand at 639.785 kb on - strand at 639.786 kb on - strand at 639.798 kb on - strand at 639.808 kb on + strand at 639.808 kb on + strand at 639.816 kb on - strand at 639.819 kb on - strand at 639.831 kb on + strand at 639.854 kb on + strand at 639.875 kb on + strand at 639.876 kb on + strand at 639.876 kb on + strand at 639.876 kb on + strand at 639.876 kb on + strand at 639.878 kb on - strand at 639.888 kb on + strand at 639.906 kb on - strand at 639.920 kb on + strand at 639.920 kb on + strand at 639.928 kb on - strand at 639.928 kb on - strand at 639.928 kb on - strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.935 kb on + strand at 639.943 kb on - strand at 639.953 kb on - strand at 640.038 kb on + strand at 640.049 kb on - strand at 640.049 kb on - strand at 640.051 kb on - strand at 640.055 kb on + strand at 640.056 kb on - strand at 640.060 kb on + strand at 640.066 kb on + strand at 640.075 kb on - strand at 640.077 kb on + strand at 640.085 kb on + strand at 640.092 kb on + strand at 640.092 kb on + strand at 640.092 kb on + strand at 640.092 kb on + strand at 640.092 kb on + strand at 640.092 kb on + strand at 640.095 kb on - strand at 640.100 kb on - strand at 640.102 kb on + strand at 640.110 kb on - strand at 640.110 kb on - strand at 640.110 kb on - strand at 640.147 kb on - strand at 640.177 kb on - strand at 640.179 kb on + strand at 640.189 kb on + strand at 640.222 kb on - strand at 640.227 kb on - strand at 640.272 kb on - strand at 640.311 kb on - strand at 640.313 kb on + strand at 640.372 kb on + strand, within TX73_002990 at 640.372 kb on + strand, within TX73_002990 at 640.372 kb on + strand, within TX73_002990 at 640.374 kb on - strand, within TX73_002990 at 640.374 kb on - strand, within TX73_002990 at 640.380 kb on - strand, within TX73_002990 at 640.380 kb on - strand, within TX73_002990 at 640.474 kb on + strand, within TX73_002990 at 640.482 kb on - strand, within TX73_002990 at 640.484 kb on + strand, within TX73_002990 at 640.492 kb on - strand, within TX73_002990 at 641.170 kb on + strand, within TX73_002990 at 641.329 kb on - strand, within TX73_002990 at 641.695 kb on - strand, within TX73_002990 at 641.768 kb on + strand, within TX73_002990 at 641.789 kb on + strand, within TX73_002990 at 642.097 kb on + strand, within TX73_002990 at 642.099 kb on + strand, within TX73_002990 at 642.105 kb on - strand at 642.129 kb on - strand at 642.134 kb on - strand at 642.138 kb on + strand at 642.153 kb on - strand at 642.162 kb on - strand at 642.165 kb on + strand at 642.216 kb on - strand at 642.315 kb on + strand at 642.315 kb on + strand at 642.323 kb on - strand at 642.324 kb on - strand at 642.338 kb on + strand at 642.371 kb on + strand at 642.371 kb on + strand at 642.379 kb on - strand at 642.393 kb on + strand at 642.430 kb on + strand at 642.433 kb on - strand at 642.435 kb on + strand at 642.441 kb on + strand at 642.441 kb on + strand at 642.449 kb on - strand at 642.449 kb on - strand at 642.449 kb on - strand at 642.449 kb on - strand at 642.449 kb on - strand at 642.449 kb on - strand at 642.462 kb on - strand at 642.486 kb on + strand at 642.518 kb on + strand at 642.520 kb on + strand at 642.528 kb on - strand at 642.536 kb on - strand, within TX73_002995 at 642.546 kb on - strand, within TX73_002995 at 642.546 kb on - strand, within TX73_002995 at 642.546 kb on - strand, within TX73_002995 at 642.570 kb on - strand, within TX73_002995 at 642.597 kb on - strand, within TX73_002995 at 642.597 kb on - strand, within TX73_002995 at 642.603 kb on + strand, within TX73_002995 at 642.611 kb on - strand, within TX73_002995 at 642.614 kb on + strand, within TX73_002995 at 642.614 kb on + strand, within TX73_002995 at 642.629 kb on - strand, within TX73_002995 at 642.630 kb on + strand, within TX73_002995 at 642.666 kb on + strand, within TX73_002995 at 642.768 kb on + strand at 642.768 kb on + strand at 642.776 kb on - strand at 642.786 kb on + strand at 642.882 kb on - strand, within TX73_003000 at 642.916 kb on - strand, within TX73_003000 at 642.945 kb on + strand, within TX73_003000 at 642.952 kb on - strand, within TX73_003000 at 642.990 kb on + strand, within TX73_003000 at 643.015 kb on + strand, within TX73_003000 at 643.032 kb on + strand, within TX73_003000 at 643.047 kb on + strand at 643.065 kb on - strand at 643.264 kb on - strand at 643.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoate (C) remove 639,108 - TX73_002985 0.12 +0.3 639,108 - TX73_002985 0.12 -1.9 639,108 - TX73_002985 0.12 -3.6 639,108 - TX73_002985 0.12 -2.2 639,111 + TX73_002985 0.13 -0.9 639,116 + TX73_002985 0.13 +0.4 639,116 + TX73_002985 0.13 +0.6 639,116 + TX73_002985 0.13 +1.5 639,123 + TX73_002985 0.14 -0.4 639,131 - TX73_002985 0.15 +0.8 639,134 + TX73_002985 0.16 +0.0 639,137 - TX73_002985 0.16 -0.0 639,142 - TX73_002985 0.17 -0.0 639,164 - TX73_002985 0.19 +1.1 639,166 - TX73_002985 0.19 +1.1 639,170 + TX73_002985 0.20 -2.1 639,195 + TX73_002985 0.23 +2.2 639,195 + TX73_002985 0.23 +1.5 639,195 + TX73_002985 0.23 -2.2 639,195 + TX73_002985 0.23 +0.8 639,195 + TX73_002985 0.23 +1.2 639,195 + TX73_002985 0.23 -0.9 639,195 + TX73_002985 0.23 +0.6 639,195 + TX73_002985 0.23 -1.2 639,195 + TX73_002985 0.23 -0.2 639,195 + TX73_002985 0.23 +0.2 639,195 + TX73_002985 0.23 -0.5 639,203 - TX73_002985 0.24 -0.5 639,203 - TX73_002985 0.24 +1.5 639,203 - TX73_002985 0.24 -0.7 639,203 - TX73_002985 0.24 -0.7 639,203 - TX73_002985 0.24 +0.3 639,203 - TX73_002985 0.24 -0.4 639,203 - TX73_002985 0.24 +0.6 639,235 + TX73_002985 0.28 -2.4 639,267 - TX73_002985 0.32 -1.4 639,288 + TX73_002985 0.34 +0.7 639,288 + TX73_002985 0.34 +1.3 639,296 - TX73_002985 0.35 -3.6 639,296 - TX73_002985 0.35 -1.4 639,298 + TX73_002985 0.35 +1.1 639,313 + TX73_002985 0.37 -0.2 639,342 + TX73_002985 0.41 -3.1 639,348 + TX73_002985 0.41 -2.9 639,348 + TX73_002985 0.41 -2.1 639,353 + TX73_002985 0.42 -0.1 639,356 + TX73_002985 0.42 +0.3 639,361 + TX73_002985 0.43 -2.0 639,364 - TX73_002985 0.43 +1.2 639,374 + TX73_002985 0.44 -0.9 639,389 - TX73_002985 0.46 -0.1 639,389 - TX73_002985 0.46 +0.3 639,415 + TX73_002985 0.49 -0.8 639,423 - TX73_002985 0.50 +1.2 639,423 - TX73_002985 0.50 +2.1 639,425 - TX73_002985 0.50 -2.7 639,427 + TX73_002985 0.51 +0.4 639,486 - TX73_002985 0.58 +0.2 639,506 + TX73_002985 0.60 +1.7 639,525 + TX73_002985 0.62 +0.3 639,533 - TX73_002985 0.63 +2.2 639,533 - TX73_002985 0.63 +0.6 639,563 + TX73_002985 0.67 -1.2 639,563 + TX73_002985 0.67 +0.3 639,572 - TX73_002985 0.68 +0.6 639,605 + TX73_002985 0.72 -1.1 639,605 + TX73_002985 0.72 +0.8 639,610 + TX73_002985 0.73 -0.8 639,612 + TX73_002985 0.73 +0.8 639,613 - TX73_002985 0.73 -0.9 639,666 + TX73_002985 0.79 +0.5 639,673 - TX73_002985 0.80 +0.2 639,699 - TX73_002985 0.83 -2.4 639,730 + TX73_002985 0.87 -2.8 639,735 + TX73_002985 0.88 -1.5 639,735 + TX73_002985 0.88 -0.0 639,735 + TX73_002985 0.88 -2.0 639,735 + TX73_002985 0.88 -0.9 639,735 + TX73_002985 0.88 +0.6 639,738 - TX73_002985 0.88 -1.8 639,743 - TX73_002985 0.89 -0.7 639,743 - TX73_002985 0.89 -1.4 639,748 - TX73_002985 0.89 +0.2 639,756 + +0.2 639,759 - +0.7 639,785 - +0.3 639,786 - +0.6 639,798 - +1.8 639,808 + +0.2 639,808 + -3.1 639,816 - -0.9 639,819 - +0.2 639,831 + -2.5 639,854 + +0.7 639,875 + -0.0 639,876 + +0.9 639,876 + -1.2 639,876 + +0.5 639,876 + +1.2 639,878 - +1.2 639,888 + +0.1 639,906 - -1.9 639,920 + -0.0 639,920 + -2.0 639,928 - +0.9 639,928 - -1.1 639,928 - +0.8 639,933 + -2.1 639,933 + +2.6 639,935 + +0.0 639,943 - -0.2 639,953 - +0.7 640,038 + +0.2 640,049 - -0.6 640,049 - +0.1 640,051 - -0.6 640,055 + -0.2 640,056 - -1.4 640,060 + -1.4 640,066 + -2.3 640,075 - +0.1 640,077 + -0.5 640,085 + -0.5 640,092 + +1.0 640,092 + -0.1 640,092 + -1.6 640,092 + +1.9 640,092 + +0.1 640,092 + -1.7 640,095 - -0.9 640,100 - +0.4 640,102 + +0.7 640,110 - +0.8 640,110 - -0.1 640,110 - +0.6 640,147 - +1.5 640,177 - +0.1 640,179 + +1.0 640,189 + +0.2 640,222 - -1.0 640,227 - -2.2 640,272 - +0.7 640,311 - +0.6 640,313 + +1.6 640,372 + TX73_002990 0.12 +0.0 640,372 + TX73_002990 0.12 -0.5 640,372 + TX73_002990 0.12 +0.9 640,374 - TX73_002990 0.12 -0.9 640,374 - TX73_002990 0.12 -0.8 640,380 - TX73_002990 0.12 -2.5 640,380 - TX73_002990 0.12 +0.3 640,474 + TX73_002990 0.17 +1.6 640,482 - TX73_002990 0.17 +0.6 640,484 + TX73_002990 0.17 +0.6 640,492 - TX73_002990 0.17 +0.0 641,170 + TX73_002990 0.48 +0.6 641,329 - TX73_002990 0.55 -0.2 641,695 - TX73_002990 0.72 +2.0 641,768 + TX73_002990 0.75 +0.3 641,789 + TX73_002990 0.76 +1.0 642,097 + TX73_002990 0.90 -0.4 642,099 + TX73_002990 0.90 -0.2 642,105 - -0.0 642,129 - +0.6 642,134 - +1.0 642,138 + +0.7 642,153 - -0.4 642,162 - +0.3 642,165 + -1.5 642,216 - -0.4 642,315 + +0.9 642,315 + +0.3 642,323 - +0.1 642,324 - +1.5 642,338 + +0.4 642,371 + -1.8 642,371 + -1.9 642,379 - +0.6 642,393 + -1.4 642,430 + +0.3 642,433 - -1.2 642,435 + +1.1 642,441 + -0.5 642,441 + +1.3 642,449 - -1.2 642,449 - +0.5 642,449 - +0.6 642,449 - -0.5 642,449 - +0.7 642,449 - +0.9 642,462 - -0.9 642,486 + -0.9 642,518 + +0.2 642,520 + -0.2 642,528 - +0.1 642,536 - TX73_002995 0.11 +0.0 642,546 - TX73_002995 0.15 +0.4 642,546 - TX73_002995 0.15 -0.4 642,546 - TX73_002995 0.15 +0.4 642,570 - TX73_002995 0.24 +0.6 642,597 - TX73_002995 0.35 +1.9 642,597 - TX73_002995 0.35 +0.5 642,603 + TX73_002995 0.37 -0.9 642,611 - TX73_002995 0.40 +1.1 642,614 + TX73_002995 0.42 -2.5 642,614 + TX73_002995 0.42 +0.6 642,629 - TX73_002995 0.48 +1.1 642,630 + TX73_002995 0.48 +1.1 642,666 + TX73_002995 0.62 +0.9 642,768 + -1.4 642,768 + +0.1 642,776 - -0.2 642,786 + +0.8 642,882 - TX73_003000 0.12 -0.2 642,916 - TX73_003000 0.28 +0.9 642,945 + TX73_003000 0.42 +0.2 642,952 - TX73_003000 0.45 +0.1 642,990 + TX73_003000 0.63 -3.6 643,015 + TX73_003000 0.75 +0.4 643,032 + TX73_003000 0.83 +0.9 643,047 + -0.2 643,065 - +0.9 643,264 - +0.4 643,271 - +0.6
Or see this region's nucleotide sequence