Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07010

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07015 and HMPREF1058_RS07010 are separated by 49 nucleotidesHMPREF1058_RS07010 and HMPREF1058_RS07005 are separated by 200 nucleotides HMPREF1058_RS07015: HMPREF1058_RS07015 - EFR1 family ferrodoxin, at 334,740 to 335,507 _RS07015 HMPREF1058_RS07010: HMPREF1058_RS07010 - endolytic transglycosylase MltG, at 335,557 to 336,591 _RS07010 HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315 _RS07005 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 334.558 kb on + strandat 334.558 kb on + strandat 334.559 kb on - strandat 334.614 kb on + strandat 334.681 kb on - strandat 334.681 kb on - strandat 334.683 kb on - strandat 334.739 kb on + strandat 334.767 kb on - strandat 334.825 kb on + strand, within HMPREF1058_RS07015at 334.826 kb on - strand, within HMPREF1058_RS07015at 334.826 kb on - strand, within HMPREF1058_RS07015at 334.829 kb on + strand, within HMPREF1058_RS07015at 334.837 kb on + strand, within HMPREF1058_RS07015at 334.855 kb on - strand, within HMPREF1058_RS07015at 334.898 kb on - strand, within HMPREF1058_RS07015at 334.899 kb on + strandat 334.925 kb on - strand, within HMPREF1058_RS07015at 334.946 kb on - strand, within HMPREF1058_RS07015at 334.965 kb on + strand, within HMPREF1058_RS07015at 334.998 kb on - strand, within HMPREF1058_RS07015at 334.998 kb on - strand, within HMPREF1058_RS07015at 335.084 kb on + strand, within HMPREF1058_RS07015at 335.084 kb on + strand, within HMPREF1058_RS07015at 335.084 kb on + strand, within HMPREF1058_RS07015at 335.085 kb on - strand, within HMPREF1058_RS07015at 335.085 kb on - strand, within HMPREF1058_RS07015at 335.088 kb on + strand, within HMPREF1058_RS07015at 335.089 kb on - strand, within HMPREF1058_RS07015at 335.113 kb on + strand, within HMPREF1058_RS07015at 335.114 kb on - strand, within HMPREF1058_RS07015at 335.114 kb on - strand, within HMPREF1058_RS07015at 335.126 kb on + strand, within HMPREF1058_RS07015at 335.128 kb on + strand, within HMPREF1058_RS07015at 335.128 kb on + strand, within HMPREF1058_RS07015at 335.128 kb on + strand, within HMPREF1058_RS07015at 335.128 kb on + strand, within HMPREF1058_RS07015at 335.213 kb on + strand, within HMPREF1058_RS07015at 335.214 kb on - strand, within HMPREF1058_RS07015at 335.250 kb on + strand, within HMPREF1058_RS07015at 335.328 kb on - strand, within HMPREF1058_RS07015at 335.328 kb on - strand, within HMPREF1058_RS07015at 335.361 kb on - strand, within HMPREF1058_RS07015at 335.362 kb on + strand, within HMPREF1058_RS07015at 335.362 kb on + strand, within HMPREF1058_RS07015at 335.362 kb on + strand, within HMPREF1058_RS07015at 335.363 kb on - strand, within HMPREF1058_RS07015at 335.394 kb on - strand, within HMPREF1058_RS07015at 335.478 kb on + strandat 335.506 kb on - strandat 335.509 kb on + strandat 335.510 kb on - strandat 335.521 kb on - strandat 335.542 kb on + strandat 335.543 kb on - strandat 335.671 kb on - strand, within HMPREF1058_RS07010at 335.671 kb on - strand, within HMPREF1058_RS07010at 335.676 kb on + strand, within HMPREF1058_RS07010at 335.676 kb on + strand, within HMPREF1058_RS07010at 335.676 kb on + strand, within HMPREF1058_RS07010at 335.677 kb on - strand, within HMPREF1058_RS07010at 335.677 kb on - strand, within HMPREF1058_RS07010at 335.693 kb on + strand, within HMPREF1058_RS07010at 335.693 kb on + strand, within HMPREF1058_RS07010at 335.694 kb on - strand, within HMPREF1058_RS07010at 335.772 kb on + strand, within HMPREF1058_RS07010at 335.773 kb on - strand, within HMPREF1058_RS07010at 335.775 kb on - strand, within HMPREF1058_RS07010at 335.875 kb on - strand, within HMPREF1058_RS07010at 335.977 kb on - strand, within HMPREF1058_RS07010at 336.069 kb on + strand, within HMPREF1058_RS07010at 336.093 kb on + strand, within HMPREF1058_RS07010at 336.126 kb on + strand, within HMPREF1058_RS07010at 336.126 kb on + strandat 336.235 kb on + strand, within HMPREF1058_RS07010at 336.340 kb on + strand, within HMPREF1058_RS07010at 336.341 kb on - strand, within HMPREF1058_RS07010at 336.390 kb on + strand, within HMPREF1058_RS07010at 336.397 kb on - strand, within HMPREF1058_RS07010at 336.428 kb on - strand, within HMPREF1058_RS07010at 336.454 kb on + strand, within HMPREF1058_RS07010at 336.456 kb on + strand, within HMPREF1058_RS07010at 336.458 kb on + strand, within HMPREF1058_RS07010at 336.459 kb on - strand, within HMPREF1058_RS07010at 336.459 kb on - strand, within HMPREF1058_RS07010at 336.462 kb on + strand, within HMPREF1058_RS07010at 336.464 kb on + strand, within HMPREF1058_RS07010at 336.504 kb on - strandat 336.509 kb on + strandat 336.509 kb on + strandat 336.510 kb on - strandat 336.510 kb on - strandat 336.510 kb on - strandat 336.511 kb on + strandat 336.512 kb on - strandat 336.514 kb on - strandat 336.514 kb on - strandat 336.550 kb on - strandat 336.559 kb on - strandat 336.559 kb on - strandat 336.565 kb on + strandat 336.615 kb on - strandat 336.623 kb on - strandat 336.625 kb on - strandat 336.625 kb on - strandat 336.704 kb on + strandat 336.704 kb on + strandat 336.705 kb on - strandat 336.746 kb on + strandat 336.748 kb on + strandat 336.792 kb on - strandat 336.853 kb on + strandat 336.854 kb on - strandat 336.926 kb on + strandat 336.926 kb on + strandat 336.927 kb on - strandat 337.063 kb on - strand, within HMPREF1058_RS07005at 337.146 kb on - strand, within HMPREF1058_RS07005at 337.186 kb on + strand, within HMPREF1058_RS07005at 337.201 kb on - strand, within HMPREF1058_RS07005at 337.201 kb on - strand, within HMPREF1058_RS07005at 337.216 kb on + strand, within HMPREF1058_RS07005at 337.258 kb on - strand, within HMPREF1058_RS07005at 337.345 kb on + strand, within HMPREF1058_RS07005at 337.349 kb on + strand, within HMPREF1058_RS07005at 337.393 kb on - strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.434 kb on + strand, within HMPREF1058_RS07005at 337.435 kb on - strand, within HMPREF1058_RS07005at 337.435 kb on - strand, within HMPREF1058_RS07005at 337.479 kb on + strand, within HMPREF1058_RS07005at 337.551 kb on + strand, within HMPREF1058_RS07005

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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334,558 + -0.1
334,558 + +1.5
334,559 - +0.3
334,614 + +0.6
334,681 - +0.8
334,681 - -0.4
334,683 - +0.2
334,739 + -1.1
334,767 - -1.0
334,825 + HMPREF1058_RS07015 0.11 -1.9
334,826 - HMPREF1058_RS07015 0.11 +0.1
334,826 - HMPREF1058_RS07015 0.11 +0.7
334,829 + HMPREF1058_RS07015 0.12 +0.7
334,837 + HMPREF1058_RS07015 0.13 -0.1
334,855 - HMPREF1058_RS07015 0.15 -0.2
334,898 - HMPREF1058_RS07015 0.21 +0.1
334,899 + +2.5
334,925 - HMPREF1058_RS07015 0.24 -0.5
334,946 - HMPREF1058_RS07015 0.27 -0.6
334,965 + HMPREF1058_RS07015 0.29 +0.5
334,998 - HMPREF1058_RS07015 0.34 +0.5
334,998 - HMPREF1058_RS07015 0.34 -2.4
335,084 + HMPREF1058_RS07015 0.45 +0.3
335,084 + HMPREF1058_RS07015 0.45 -1.4
335,084 + HMPREF1058_RS07015 0.45 -2.2
335,085 - HMPREF1058_RS07015 0.45 -0.0
335,085 - HMPREF1058_RS07015 0.45 -0.2
335,088 + HMPREF1058_RS07015 0.45 -0.9
335,089 - HMPREF1058_RS07015 0.45 +0.4
335,113 + HMPREF1058_RS07015 0.49 +0.9
335,114 - HMPREF1058_RS07015 0.49 +1.1
335,114 - HMPREF1058_RS07015 0.49 -0.2
335,126 + HMPREF1058_RS07015 0.50 -0.4
335,128 + HMPREF1058_RS07015 0.51 -0.2
335,128 + HMPREF1058_RS07015 0.51 +0.5
335,128 + HMPREF1058_RS07015 0.51 +0.1
335,128 + HMPREF1058_RS07015 0.51 -0.3
335,213 + HMPREF1058_RS07015 0.62 -0.4
335,214 - HMPREF1058_RS07015 0.62 -0.8
335,250 + HMPREF1058_RS07015 0.66 -0.7
335,328 - HMPREF1058_RS07015 0.77 -0.1
335,328 - HMPREF1058_RS07015 0.77 +0.0
335,361 - HMPREF1058_RS07015 0.81 +0.7
335,362 + HMPREF1058_RS07015 0.81 +0.1
335,362 + HMPREF1058_RS07015 0.81 +0.5
335,362 + HMPREF1058_RS07015 0.81 -0.2
335,363 - HMPREF1058_RS07015 0.81 +0.4
335,394 - HMPREF1058_RS07015 0.85 -0.2
335,478 + +1.4
335,506 - +0.0
335,509 + -0.5
335,510 - -1.6
335,521 - +0.4
335,542 + +1.3
335,543 - -0.1
335,671 - HMPREF1058_RS07010 0.11 +0.8
335,671 - HMPREF1058_RS07010 0.11 -1.7
335,676 + HMPREF1058_RS07010 0.11 -0.2
335,676 + HMPREF1058_RS07010 0.11 +0.2
335,676 + HMPREF1058_RS07010 0.11 +1.3
335,677 - HMPREF1058_RS07010 0.12 +1.4
335,677 - HMPREF1058_RS07010 0.12 +1.4
335,693 + HMPREF1058_RS07010 0.13 +2.2
335,693 + HMPREF1058_RS07010 0.13 -0.4
335,694 - HMPREF1058_RS07010 0.13 +1.9
335,772 + HMPREF1058_RS07010 0.21 +0.6
335,773 - HMPREF1058_RS07010 0.21 +0.5
335,775 - HMPREF1058_RS07010 0.21 +0.6
335,875 - HMPREF1058_RS07010 0.31 +0.9
335,977 - HMPREF1058_RS07010 0.41 +0.9
336,069 + HMPREF1058_RS07010 0.49 +1.8
336,093 + HMPREF1058_RS07010 0.52 +1.7
336,126 + HMPREF1058_RS07010 0.55 +0.0
336,126 + -0.1
336,235 + HMPREF1058_RS07010 0.66 +3.0
336,340 + HMPREF1058_RS07010 0.76 +2.5
336,341 - HMPREF1058_RS07010 0.76 +0.3
336,390 + HMPREF1058_RS07010 0.80 -0.1
336,397 - HMPREF1058_RS07010 0.81 +3.8
336,428 - HMPREF1058_RS07010 0.84 -0.9
336,454 + HMPREF1058_RS07010 0.87 +1.2
336,456 + HMPREF1058_RS07010 0.87 +2.2
336,458 + HMPREF1058_RS07010 0.87 -0.3
336,459 - HMPREF1058_RS07010 0.87 +0.6
336,459 - HMPREF1058_RS07010 0.87 +1.4
336,462 + HMPREF1058_RS07010 0.87 +1.0
336,464 + HMPREF1058_RS07010 0.88 +1.4
336,504 - -0.5
336,509 + +1.2
336,509 + +0.2
336,510 - +1.2
336,510 - +2.0
336,510 - +1.1
336,511 + +0.7
336,512 - +0.1
336,514 - -0.6
336,514 - +1.8
336,550 - +1.5
336,559 - -0.4
336,559 - +0.2
336,565 + +1.0
336,615 - +0.3
336,623 - -0.7
336,625 - +0.8
336,625 - -0.3
336,704 + +1.6
336,704 + +0.2
336,705 - -1.9
336,746 + -1.2
336,748 + -0.4
336,792 - +0.8
336,853 + -3.2
336,854 - +0.6
336,926 + +0.4
336,926 + -1.1
336,927 - +1.6
337,063 - HMPREF1058_RS07005 0.18 +3.1
337,146 - HMPREF1058_RS07005 0.23 -0.5
337,186 + HMPREF1058_RS07005 0.26 +0.8
337,201 - HMPREF1058_RS07005 0.27 +0.5
337,201 - HMPREF1058_RS07005 0.27 -0.2
337,216 + HMPREF1058_RS07005 0.28 +0.6
337,258 - HMPREF1058_RS07005 0.31 +2.1
337,345 + HMPREF1058_RS07005 0.36 -0.1
337,349 + HMPREF1058_RS07005 0.37 -0.3
337,393 - HMPREF1058_RS07005 0.39 +1.0
337,434 + HMPREF1058_RS07005 0.42 -0.5
337,434 + HMPREF1058_RS07005 0.42 -0.7
337,434 + HMPREF1058_RS07005 0.42 -0.7
337,435 - HMPREF1058_RS07005 0.42 +1.5
337,435 - HMPREF1058_RS07005 0.42 +0.2
337,479 + HMPREF1058_RS07005 0.45 +0.0
337,551 + HMPREF1058_RS07005 0.50 -0.7

Or see this region's nucleotide sequence