Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03415

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS03420 and HMPREF1058_RS03415 are separated by 16 nucleotidesHMPREF1058_RS03415 and HMPREF1058_RS03410 are separated by 33 nucleotides HMPREF1058_RS03420: HMPREF1058_RS03420 - O-antigen ligase family protein, at 284,094 to 285,440 _RS03420 HMPREF1058_RS03415: HMPREF1058_RS03415 - glycosyltransferase family 4 protein, at 285,457 to 286,584 _RS03415 HMPREF1058_RS03410: HMPREF1058_RS03410 - hypothetical protein, at 286,618 to 287,601 _RS03410 Position (kb) 285 286 287Strain fitness (log2 ratio) -2 -1 0 1 2 3at 284.484 kb on + strand, within HMPREF1058_RS03420at 284.484 kb on + strand, within HMPREF1058_RS03420at 284.495 kb on + strand, within HMPREF1058_RS03420at 284.496 kb on - strand, within HMPREF1058_RS03420at 284.520 kb on + strand, within HMPREF1058_RS03420at 284.520 kb on + strand, within HMPREF1058_RS03420at 284.520 kb on + strand, within HMPREF1058_RS03420at 284.520 kb on + strand, within HMPREF1058_RS03420at 284.523 kb on - strand, within HMPREF1058_RS03420at 284.678 kb on - strand, within HMPREF1058_RS03420at 284.680 kb on + strand, within HMPREF1058_RS03420at 284.680 kb on + strand, within HMPREF1058_RS03420at 284.681 kb on - strand, within HMPREF1058_RS03420at 284.682 kb on + strand, within HMPREF1058_RS03420at 284.683 kb on - strand, within HMPREF1058_RS03420at 284.683 kb on - strand, within HMPREF1058_RS03420at 284.772 kb on + strand, within HMPREF1058_RS03420at 284.772 kb on + strand, within HMPREF1058_RS03420at 284.775 kb on - strand, within HMPREF1058_RS03420at 284.775 kb on - strand, within HMPREF1058_RS03420at 284.795 kb on + strand, within HMPREF1058_RS03420at 284.807 kb on + strand, within HMPREF1058_RS03420at 284.807 kb on + strand, within HMPREF1058_RS03420at 284.848 kb on - strand, within HMPREF1058_RS03420at 284.945 kb on + strand, within HMPREF1058_RS03420at 284.945 kb on + strand, within HMPREF1058_RS03420at 284.945 kb on + strand, within HMPREF1058_RS03420at 284.951 kb on - strand, within HMPREF1058_RS03420at 284.960 kb on - strand, within HMPREF1058_RS03420at 284.989 kb on - strand, within HMPREF1058_RS03420at 285.008 kb on + strand, within HMPREF1058_RS03420at 285.030 kb on + strand, within HMPREF1058_RS03420at 285.032 kb on + strand, within HMPREF1058_RS03420at 285.033 kb on - strand, within HMPREF1058_RS03420at 285.033 kb on - strand, within HMPREF1058_RS03420at 285.033 kb on - strand, within HMPREF1058_RS03420at 285.036 kb on + strand, within HMPREF1058_RS03420at 285.036 kb on + strand, within HMPREF1058_RS03420at 285.046 kb on - strand, within HMPREF1058_RS03420at 285.046 kb on - strand, within HMPREF1058_RS03420at 285.053 kb on + strand, within HMPREF1058_RS03420at 285.054 kb on - strand, within HMPREF1058_RS03420at 285.066 kb on + strand, within HMPREF1058_RS03420at 285.067 kb on - strand, within HMPREF1058_RS03420at 285.068 kb on + strand, within HMPREF1058_RS03420at 285.068 kb on + strand, within HMPREF1058_RS03420at 285.069 kb on - strand, within HMPREF1058_RS03420at 285.076 kb on - strand, within HMPREF1058_RS03420at 285.096 kb on - strand, within HMPREF1058_RS03420at 285.119 kb on + strand, within HMPREF1058_RS03420at 285.119 kb on + strand, within HMPREF1058_RS03420at 285.174 kb on - strand, within HMPREF1058_RS03420at 285.185 kb on - strand, within HMPREF1058_RS03420at 285.228 kb on + strand, within HMPREF1058_RS03420at 285.248 kb on + strand, within HMPREF1058_RS03420at 285.279 kb on - strand, within HMPREF1058_RS03420at 285.279 kb on - strand, within HMPREF1058_RS03420at 285.335 kb on + strandat 285.347 kb on + strandat 285.347 kb on + strandat 285.347 kb on + strandat 285.380 kb on + strandat 285.402 kb on + strandat 285.425 kb on + strandat 285.442 kb on + strandat 285.442 kb on + strandat 285.599 kb on - strand, within HMPREF1058_RS03415at 285.666 kb on + strand, within HMPREF1058_RS03415at 285.755 kb on - strand, within HMPREF1058_RS03415at 285.769 kb on - strand, within HMPREF1058_RS03415at 285.773 kb on - strand, within HMPREF1058_RS03415at 285.782 kb on - strand, within HMPREF1058_RS03415at 285.782 kb on - strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.800 kb on + strand, within HMPREF1058_RS03415at 285.801 kb on - strand, within HMPREF1058_RS03415at 285.804 kb on + strand, within HMPREF1058_RS03415at 285.972 kb on + strand, within HMPREF1058_RS03415at 285.972 kb on + strand, within HMPREF1058_RS03415at 285.994 kb on + strand, within HMPREF1058_RS03415at 285.995 kb on - strand, within HMPREF1058_RS03415at 285.995 kb on - strand, within HMPREF1058_RS03415at 286.025 kb on - strand, within HMPREF1058_RS03415at 286.096 kb on + strand, within HMPREF1058_RS03415at 286.096 kb on + strand, within HMPREF1058_RS03415at 286.099 kb on - strand, within HMPREF1058_RS03415at 286.099 kb on - strand, within HMPREF1058_RS03415at 286.102 kb on + strand, within HMPREF1058_RS03415at 286.114 kb on + strand, within HMPREF1058_RS03415at 286.195 kb on + strand, within HMPREF1058_RS03415at 286.196 kb on - strand, within HMPREF1058_RS03415at 286.196 kb on - strand, within HMPREF1058_RS03415at 286.204 kb on - strand, within HMPREF1058_RS03415at 286.228 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.240 kb on + strand, within HMPREF1058_RS03415at 286.241 kb on - strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.249 kb on + strand, within HMPREF1058_RS03415at 286.253 kb on + strand, within HMPREF1058_RS03415at 286.254 kb on - strand, within HMPREF1058_RS03415at 286.263 kb on + strand, within HMPREF1058_RS03415at 286.280 kb on - strand, within HMPREF1058_RS03415at 286.284 kb on + strand, within HMPREF1058_RS03415at 286.339 kb on + strand, within HMPREF1058_RS03415at 286.425 kb on + strand, within HMPREF1058_RS03415at 286.426 kb on - strand, within HMPREF1058_RS03415at 286.430 kb on - strand, within HMPREF1058_RS03415at 286.444 kb on + strand, within HMPREF1058_RS03415at 286.445 kb on + strand, within HMPREF1058_RS03415at 286.445 kb on - strand, within HMPREF1058_RS03415at 286.450 kb on + strand, within HMPREF1058_RS03415at 286.509 kb on + strandat 286.509 kb on + strandat 286.526 kb on + strandat 286.527 kb on - strandat 286.564 kb on + strandat 286.565 kb on - strandat 286.570 kb on + strandat 286.616 kb on + strandat 286.702 kb on + strandat 286.702 kb on + strandat 286.702 kb on + strandat 286.706 kb on + strandat 286.707 kb on - strandat 286.707 kb on - strandat 286.710 kb on + strandat 286.711 kb on - strandat 286.725 kb on + strand, within HMPREF1058_RS03410at 286.775 kb on - strand, within HMPREF1058_RS03410at 286.775 kb on - strand, within HMPREF1058_RS03410at 286.788 kb on + strand, within HMPREF1058_RS03410at 286.803 kb on + strand, within HMPREF1058_RS03410at 286.843 kb on - strand, within HMPREF1058_RS03410at 286.860 kb on + strand, within HMPREF1058_RS03410at 286.861 kb on - strand, within HMPREF1058_RS03410at 286.911 kb on - strand, within HMPREF1058_RS03410at 286.953 kb on + strand, within HMPREF1058_RS03410at 286.953 kb on + strand, within HMPREF1058_RS03410at 286.954 kb on - strand, within HMPREF1058_RS03410at 286.972 kb on + strand, within HMPREF1058_RS03410at 287.026 kb on - strand, within HMPREF1058_RS03410at 287.058 kb on + strand, within HMPREF1058_RS03410at 287.058 kb on + strand, within HMPREF1058_RS03410at 287.061 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.078 kb on + strand, within HMPREF1058_RS03410at 287.079 kb on - strand, within HMPREF1058_RS03410at 287.230 kb on + strand, within HMPREF1058_RS03410at 287.231 kb on - strand, within HMPREF1058_RS03410at 287.235 kb on - strand, within HMPREF1058_RS03410at 287.298 kb on + strand, within HMPREF1058_RS03410at 287.299 kb on - strand, within HMPREF1058_RS03410at 287.299 kb on - strand, within HMPREF1058_RS03410at 287.306 kb on + strand, within HMPREF1058_RS03410at 287.352 kb on - strand, within HMPREF1058_RS03410at 287.355 kb on + strand, within HMPREF1058_RS03410at 287.358 kb on - strand, within HMPREF1058_RS03410at 287.420 kb on - strand, within HMPREF1058_RS03410at 287.439 kb on + strand, within HMPREF1058_RS03410at 287.440 kb on - strand, within HMPREF1058_RS03410at 287.474 kb on + strand, within HMPREF1058_RS03410at 287.475 kb on - strand, within HMPREF1058_RS03410at 287.475 kb on - strand, within HMPREF1058_RS03410at 287.541 kb on - strandat 287.541 kb on - strandat 287.545 kb on - strandat 287.548 kb on + strandat 287.548 kb on + strandat 287.553 kb on + strandat 287.553 kb on + strandat 287.554 kb on - strandat 287.554 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.559 kb on + strandat 287.559 kb on + strandat 287.560 kb on - strandat 287.584 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
284,484 + HMPREF1058_RS03420 0.29 +1.4
284,484 + HMPREF1058_RS03420 0.29 -0.0
284,495 + HMPREF1058_RS03420 0.30 -1.2
284,496 - HMPREF1058_RS03420 0.30 +0.6
284,520 + HMPREF1058_RS03420 0.32 -0.6
284,520 + HMPREF1058_RS03420 0.32 +1.0
284,520 + HMPREF1058_RS03420 0.32 -0.0
284,520 + HMPREF1058_RS03420 0.32 +1.1
284,523 - HMPREF1058_RS03420 0.32 +0.1
284,678 - HMPREF1058_RS03420 0.43 -0.3
284,680 + HMPREF1058_RS03420 0.44 +0.4
284,680 + HMPREF1058_RS03420 0.44 +0.3
284,681 - HMPREF1058_RS03420 0.44 -0.3
284,682 + HMPREF1058_RS03420 0.44 +0.0
284,683 - HMPREF1058_RS03420 0.44 +0.1
284,683 - HMPREF1058_RS03420 0.44 -0.6
284,772 + HMPREF1058_RS03420 0.50 +0.3
284,772 + HMPREF1058_RS03420 0.50 +0.4
284,775 - HMPREF1058_RS03420 0.51 -1.0
284,775 - HMPREF1058_RS03420 0.51 +0.8
284,795 + HMPREF1058_RS03420 0.52 -1.5
284,807 + HMPREF1058_RS03420 0.53 -0.5
284,807 + HMPREF1058_RS03420 0.53 +0.3
284,848 - HMPREF1058_RS03420 0.56 +0.2
284,945 + HMPREF1058_RS03420 0.63 +2.3
284,945 + HMPREF1058_RS03420 0.63 -0.2
284,945 + HMPREF1058_RS03420 0.63 +0.0
284,951 - HMPREF1058_RS03420 0.64 +0.6
284,960 - HMPREF1058_RS03420 0.64 +1.1
284,989 - HMPREF1058_RS03420 0.66 +0.4
285,008 + HMPREF1058_RS03420 0.68 +1.1
285,030 + HMPREF1058_RS03420 0.69 -0.2
285,032 + HMPREF1058_RS03420 0.70 +0.6
285,033 - HMPREF1058_RS03420 0.70 -0.2
285,033 - HMPREF1058_RS03420 0.70 +1.2
285,033 - HMPREF1058_RS03420 0.70 +0.3
285,036 + HMPREF1058_RS03420 0.70 -0.7
285,036 + HMPREF1058_RS03420 0.70 +1.3
285,046 - HMPREF1058_RS03420 0.71 +1.3
285,046 - HMPREF1058_RS03420 0.71 -0.4
285,053 + HMPREF1058_RS03420 0.71 +0.3
285,054 - HMPREF1058_RS03420 0.71 -1.3
285,066 + HMPREF1058_RS03420 0.72 +0.7
285,067 - HMPREF1058_RS03420 0.72 +2.0
285,068 + HMPREF1058_RS03420 0.72 +0.3
285,068 + HMPREF1058_RS03420 0.72 +0.4
285,069 - HMPREF1058_RS03420 0.72 +0.0
285,076 - HMPREF1058_RS03420 0.73 +0.7
285,096 - HMPREF1058_RS03420 0.74 -0.9
285,119 + HMPREF1058_RS03420 0.76 -0.3
285,119 + HMPREF1058_RS03420 0.76 +0.6
285,174 - HMPREF1058_RS03420 0.80 -1.6
285,185 - HMPREF1058_RS03420 0.81 -1.0
285,228 + HMPREF1058_RS03420 0.84 -1.2
285,248 + HMPREF1058_RS03420 0.86 -0.3
285,279 - HMPREF1058_RS03420 0.88 -0.3
285,279 - HMPREF1058_RS03420 0.88 +0.3
285,335 + -0.4
285,347 + -1.0
285,347 + +0.4
285,347 + +0.1
285,380 + -0.7
285,402 + +0.2
285,425 + +0.2
285,442 + +1.0
285,442 + +0.4
285,599 - HMPREF1058_RS03415 0.13 -1.3
285,666 + HMPREF1058_RS03415 0.19 +0.5
285,755 - HMPREF1058_RS03415 0.26 -1.1
285,769 - HMPREF1058_RS03415 0.28 +1.4
285,773 - HMPREF1058_RS03415 0.28 +0.2
285,782 - HMPREF1058_RS03415 0.29 -0.3
285,782 - HMPREF1058_RS03415 0.29 -0.7
285,800 + HMPREF1058_RS03415 0.30 -1.0
285,800 + HMPREF1058_RS03415 0.30 -0.1
285,800 + HMPREF1058_RS03415 0.30 +0.8
285,800 + HMPREF1058_RS03415 0.30 -0.7
285,801 - HMPREF1058_RS03415 0.30 +1.1
285,804 + HMPREF1058_RS03415 0.31 +1.1
285,972 + HMPREF1058_RS03415 0.46 -1.5
285,972 + HMPREF1058_RS03415 0.46 +0.5
285,994 + HMPREF1058_RS03415 0.48 -1.3
285,995 - HMPREF1058_RS03415 0.48 -0.5
285,995 - HMPREF1058_RS03415 0.48 -0.7
286,025 - HMPREF1058_RS03415 0.50 +0.6
286,096 + HMPREF1058_RS03415 0.57 +0.8
286,096 + HMPREF1058_RS03415 0.57 +0.5
286,099 - HMPREF1058_RS03415 0.57 -0.6
286,099 - HMPREF1058_RS03415 0.57 +0.4
286,102 + HMPREF1058_RS03415 0.57 +0.5
286,114 + HMPREF1058_RS03415 0.58 -1.3
286,195 + HMPREF1058_RS03415 0.65 +2.7
286,196 - HMPREF1058_RS03415 0.66 -0.5
286,196 - HMPREF1058_RS03415 0.66 -0.2
286,204 - HMPREF1058_RS03415 0.66 +0.5
286,228 + HMPREF1058_RS03415 0.68 +2.9
286,240 + HMPREF1058_RS03415 0.69 +0.3
286,240 + HMPREF1058_RS03415 0.69 +0.1
286,240 + HMPREF1058_RS03415 0.69 -1.5
286,241 - HMPREF1058_RS03415 0.70 +1.1
286,249 + HMPREF1058_RS03415 0.70 -0.4
286,249 + HMPREF1058_RS03415 0.70 -0.7
286,249 + HMPREF1058_RS03415 0.70 -0.7
286,253 + HMPREF1058_RS03415 0.71 -0.2
286,254 - HMPREF1058_RS03415 0.71 +0.3
286,263 + HMPREF1058_RS03415 0.71 -0.6
286,280 - HMPREF1058_RS03415 0.73 +1.3
286,284 + HMPREF1058_RS03415 0.73 +1.0
286,339 + HMPREF1058_RS03415 0.78 +0.3
286,425 + HMPREF1058_RS03415 0.86 +0.6
286,426 - HMPREF1058_RS03415 0.86 +0.8
286,430 - HMPREF1058_RS03415 0.86 -0.9
286,444 + HMPREF1058_RS03415 0.88 +0.3
286,445 + HMPREF1058_RS03415 0.88 -0.9
286,445 - HMPREF1058_RS03415 0.88 +0.1
286,450 + HMPREF1058_RS03415 0.88 +0.6
286,509 + -0.8
286,509 + -0.7
286,526 + -0.3
286,527 - -0.3
286,564 + -0.1
286,565 - -0.7
286,570 + +0.9
286,616 + -1.5
286,702 + +0.1
286,702 + -0.2
286,702 + +0.4
286,706 + -0.4
286,707 - -0.3
286,707 - -0.5
286,710 + -0.9
286,711 - +0.6
286,725 + HMPREF1058_RS03410 0.11 -1.5
286,775 - HMPREF1058_RS03410 0.16 -0.1
286,775 - HMPREF1058_RS03410 0.16 +2.1
286,788 + HMPREF1058_RS03410 0.17 +0.2
286,803 + HMPREF1058_RS03410 0.19 +0.9
286,843 - HMPREF1058_RS03410 0.23 -0.6
286,860 + HMPREF1058_RS03410 0.25 +0.4
286,861 - HMPREF1058_RS03410 0.25 +0.3
286,911 - HMPREF1058_RS03410 0.30 -1.3
286,953 + HMPREF1058_RS03410 0.34 +1.0
286,953 + HMPREF1058_RS03410 0.34 -0.5
286,954 - HMPREF1058_RS03410 0.34 +0.5
286,972 + HMPREF1058_RS03410 0.36 -2.3
287,026 - HMPREF1058_RS03410 0.41 +0.4
287,058 + HMPREF1058_RS03410 0.45 +1.8
287,058 + HMPREF1058_RS03410 0.45 +0.5
287,061 + HMPREF1058_RS03410 0.45 +1.3
287,078 + HMPREF1058_RS03410 0.47 +0.4
287,078 + HMPREF1058_RS03410 0.47 -1.2
287,078 + HMPREF1058_RS03410 0.47 +0.2
287,079 - HMPREF1058_RS03410 0.47 -0.7
287,230 + HMPREF1058_RS03410 0.62 +0.3
287,231 - HMPREF1058_RS03410 0.62 -1.2
287,235 - HMPREF1058_RS03410 0.63 -0.5
287,298 + HMPREF1058_RS03410 0.69 +0.8
287,299 - HMPREF1058_RS03410 0.69 +0.1
287,299 - HMPREF1058_RS03410 0.69 +0.4
287,306 + HMPREF1058_RS03410 0.70 +1.1
287,352 - HMPREF1058_RS03410 0.75 -0.0
287,355 + HMPREF1058_RS03410 0.75 -1.1
287,358 - HMPREF1058_RS03410 0.75 -2.0
287,420 - HMPREF1058_RS03410 0.82 +0.7
287,439 + HMPREF1058_RS03410 0.83 +0.2
287,440 - HMPREF1058_RS03410 0.84 -0.7
287,474 + HMPREF1058_RS03410 0.87 +0.3
287,475 - HMPREF1058_RS03410 0.87 -0.1
287,475 - HMPREF1058_RS03410 0.87 +0.8
287,541 - +0.7
287,541 - -0.2
287,545 - -0.2
287,548 + +1.1
287,548 + +0.3
287,553 + -0.9
287,553 + -1.5
287,554 - -0.0
287,554 - +1.7
287,558 - +1.5
287,558 - +0.1
287,558 - +0.1
287,559 + +1.2
287,559 + -0.6
287,560 - -1.8
287,584 + +0.0

Or see this region's nucleotide sequence