Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05535 and HMPREF1058_RS05530 are separated by 13 nucleotides HMPREF1058_RS05530 and HMPREF1058_RS05525 are separated by 12 nucleotides
HMPREF1058_RS05535: HMPREF1058_RS05535 - DEAD/DEAH box helicase family protein, at 138,445 to 141,297
_RS05535
HMPREF1058_RS05530: HMPREF1058_RS05530 - site-specific DNA-methyltransferase, at 141,311 to 143,212
_RS05530
HMPREF1058_RS05525: HMPREF1058_RS05525 - toll/interleukin-1 receptor domain-containing protein, at 143,225 to 144,151
_RS05525
Position (kb) 141
142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 140.496 kb on + strand, within HMPREF1058_RS05535 at 140.500 kb on - strand, within HMPREF1058_RS05535 at 140.813 kb on + strand, within HMPREF1058_RS05535 at 140.854 kb on + strand, within HMPREF1058_RS05535 at 140.938 kb on - strand, within HMPREF1058_RS05535 at 141.001 kb on + strand, within HMPREF1058_RS05535 at 141.003 kb on + strand, within HMPREF1058_RS05535 at 141.004 kb on - strand, within HMPREF1058_RS05535 at 141.029 kb on - strand at 141.237 kb on + strand at 141.306 kb on + strand at 141.309 kb on - strand at 141.324 kb on - strand at 141.327 kb on + strand at 141.328 kb on - strand at 141.343 kb on + strand at 141.475 kb on + strand at 141.476 kb on - strand at 141.478 kb on - strand at 141.572 kb on + strand, within HMPREF1058_RS05530 at 141.620 kb on + strand, within HMPREF1058_RS05530 at 141.713 kb on + strand, within HMPREF1058_RS05530 at 141.713 kb on + strand, within HMPREF1058_RS05530 at 141.912 kb on + strand, within HMPREF1058_RS05530 at 141.912 kb on + strand, within HMPREF1058_RS05530 at 142.070 kb on + strand, within HMPREF1058_RS05530 at 142.073 kb on - strand, within HMPREF1058_RS05530 at 142.073 kb on - strand, within HMPREF1058_RS05530 at 142.140 kb on + strand, within HMPREF1058_RS05530 at 142.140 kb on + strand at 142.450 kb on - strand, within HMPREF1058_RS05530 at 142.534 kb on - strand, within HMPREF1058_RS05530 at 142.906 kb on - strand, within HMPREF1058_RS05530 at 142.951 kb on + strand, within HMPREF1058_RS05530 at 143.248 kb on + strand at 143.331 kb on + strand, within HMPREF1058_RS05525 at 143.593 kb on + strand, within HMPREF1058_RS05525 at 143.601 kb on + strand, within HMPREF1058_RS05525 at 143.613 kb on + strand, within HMPREF1058_RS05525 at 143.613 kb on + strand, within HMPREF1058_RS05525 at 143.615 kb on + strand, within HMPREF1058_RS05525 at 143.687 kb on - strand, within HMPREF1058_RS05525 at 143.796 kb on + strand, within HMPREF1058_RS05525 at 143.796 kb on + strand, within HMPREF1058_RS05525 at 143.797 kb on - strand, within HMPREF1058_RS05525 at 143.845 kb on - strand, within HMPREF1058_RS05525 at 143.927 kb on - strand, within HMPREF1058_RS05525 at 143.941 kb on + strand, within HMPREF1058_RS05525 at 143.953 kb on + strand, within HMPREF1058_RS05525 at 143.979 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 143.995 kb on + strand, within HMPREF1058_RS05525 at 144.007 kb on + strand, within HMPREF1058_RS05525 at 144.094 kb on + strand at 144.099 kb on + strand at 144.105 kb on + strand at 144.105 kb on + strand at 144.131 kb on - strand at 144.148 kb on - strand at 144.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 140,496 + HMPREF1058_RS05535 0.72 -0.9 140,500 - HMPREF1058_RS05535 0.72 +0.4 140,813 + HMPREF1058_RS05535 0.83 -0.3 140,854 + HMPREF1058_RS05535 0.84 +0.4 140,938 - HMPREF1058_RS05535 0.87 +0.8 141,001 + HMPREF1058_RS05535 0.90 -1.1 141,003 + HMPREF1058_RS05535 0.90 +0.2 141,004 - HMPREF1058_RS05535 0.90 -0.6 141,029 - -1.6 141,237 + +1.1 141,306 + -0.2 141,309 - +0.0 141,324 - +0.1 141,327 + -0.3 141,328 - +1.3 141,343 + -0.4 141,475 + +0.1 141,476 - -1.9 141,478 - -3.3 141,572 + HMPREF1058_RS05530 0.14 -0.2 141,620 + HMPREF1058_RS05530 0.16 +1.7 141,713 + HMPREF1058_RS05530 0.21 -0.4 141,713 + HMPREF1058_RS05530 0.21 +0.9 141,912 + HMPREF1058_RS05530 0.32 -0.3 141,912 + HMPREF1058_RS05530 0.32 +0.1 142,070 + HMPREF1058_RS05530 0.40 +0.9 142,073 - HMPREF1058_RS05530 0.40 -1.0 142,073 - HMPREF1058_RS05530 0.40 -1.0 142,140 + HMPREF1058_RS05530 0.44 -1.0 142,140 + +2.4 142,450 - HMPREF1058_RS05530 0.60 -0.7 142,534 - HMPREF1058_RS05530 0.64 -2.4 142,906 - HMPREF1058_RS05530 0.84 -0.1 142,951 + HMPREF1058_RS05530 0.86 +0.3 143,248 + +0.1 143,331 + HMPREF1058_RS05525 0.11 -1.3 143,593 + HMPREF1058_RS05525 0.40 -0.3 143,601 + HMPREF1058_RS05525 0.41 -2.1 143,613 + HMPREF1058_RS05525 0.42 -0.9 143,613 + HMPREF1058_RS05525 0.42 -2.0 143,615 + HMPREF1058_RS05525 0.42 +0.1 143,687 - HMPREF1058_RS05525 0.50 -0.2 143,796 + HMPREF1058_RS05525 0.62 -1.1 143,796 + HMPREF1058_RS05525 0.62 +0.1 143,797 - HMPREF1058_RS05525 0.62 +0.9 143,845 - HMPREF1058_RS05525 0.67 +1.1 143,927 - HMPREF1058_RS05525 0.76 +1.5 143,941 + HMPREF1058_RS05525 0.77 -0.3 143,953 + HMPREF1058_RS05525 0.79 -0.5 143,979 + HMPREF1058_RS05525 0.81 +0.9 143,995 + HMPREF1058_RS05525 0.83 +0.4 143,995 + HMPREF1058_RS05525 0.83 -0.9 143,995 + HMPREF1058_RS05525 0.83 +1.2 144,007 + HMPREF1058_RS05525 0.84 +0.0 144,094 + -0.1 144,099 + -1.9 144,105 + +0.0 144,105 + -0.7 144,131 - +0.3 144,148 - +0.9 144,176 - -0.6
Or see this region's nucleotide sequence