Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17475 and HMPREF1058_RS17470 are separated by 267 nucleotides HMPREF1058_RS17470 and HMPREF1058_RS17465 are separated by 90 nucleotides
HMPREF1058_RS17475: HMPREF1058_RS17475 - TonB-dependent receptor, at 428,082 to 431,201
_RS17475
HMPREF1058_RS17470: HMPREF1058_RS17470 - transporter, at 431,469 to 433,067
_RS17470
HMPREF1058_RS17465: HMPREF1058_RS17465 - beta-galactosidase, at 433,158 to 437,438
_RS17465
Position (kb) 431
432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 430.479 kb on + strand, within HMPREF1058_RS17475 at 430.480 kb on - strand, within HMPREF1058_RS17475 at 430.524 kb on + strand, within HMPREF1058_RS17475 at 430.571 kb on - strand, within HMPREF1058_RS17475 at 430.571 kb on - strand, within HMPREF1058_RS17475 at 430.596 kb on - strand, within HMPREF1058_RS17475 at 430.674 kb on - strand, within HMPREF1058_RS17475 at 430.724 kb on + strand, within HMPREF1058_RS17475 at 430.754 kb on + strand, within HMPREF1058_RS17475 at 430.769 kb on + strand, within HMPREF1058_RS17475 at 430.837 kb on - strand, within HMPREF1058_RS17475 at 430.885 kb on + strand, within HMPREF1058_RS17475 at 430.894 kb on - strand at 431.047 kb on - strand at 431.146 kb on - strand at 431.213 kb on + strand at 431.214 kb on - strand at 431.214 kb on - strand at 431.224 kb on - strand at 431.224 kb on - strand at 431.229 kb on - strand at 431.244 kb on - strand at 431.288 kb on - strand at 431.288 kb on - strand at 431.325 kb on + strand at 431.426 kb on + strand at 431.427 kb on - strand at 431.430 kb on + strand at 431.467 kb on + strand at 431.496 kb on + strand at 431.497 kb on - strand at 431.542 kb on + strand at 431.543 kb on - strand at 431.559 kb on - strand at 431.562 kb on - strand at 431.564 kb on + strand at 431.565 kb on - strand at 431.565 kb on - strand at 431.568 kb on + strand at 431.568 kb on + strand at 431.815 kb on - strand, within HMPREF1058_RS17470 at 431.840 kb on + strand, within HMPREF1058_RS17470 at 431.840 kb on + strand, within HMPREF1058_RS17470 at 431.841 kb on - strand, within HMPREF1058_RS17470 at 431.852 kb on + strand, within HMPREF1058_RS17470 at 431.852 kb on + strand, within HMPREF1058_RS17470 at 431.853 kb on - strand, within HMPREF1058_RS17470 at 431.853 kb on - strand, within HMPREF1058_RS17470 at 431.949 kb on - strand, within HMPREF1058_RS17470 at 431.967 kb on + strand, within HMPREF1058_RS17470 at 431.968 kb on - strand, within HMPREF1058_RS17470 at 431.976 kb on + strand, within HMPREF1058_RS17470 at 431.977 kb on - strand, within HMPREF1058_RS17470 at 431.988 kb on - strand, within HMPREF1058_RS17470 at 432.213 kb on - strand at 432.213 kb on - strand, within HMPREF1058_RS17470 at 432.452 kb on + strand, within HMPREF1058_RS17470 at 432.452 kb on + strand, within HMPREF1058_RS17470 at 432.659 kb on + strand, within HMPREF1058_RS17470 at 432.667 kb on - strand, within HMPREF1058_RS17470 at 432.668 kb on + strand, within HMPREF1058_RS17470 at 432.668 kb on + strand, within HMPREF1058_RS17470 at 432.668 kb on + strand, within HMPREF1058_RS17470 at 432.749 kb on - strand, within HMPREF1058_RS17470 at 432.788 kb on + strand, within HMPREF1058_RS17470 at 432.795 kb on - strand, within HMPREF1058_RS17470 at 433.005 kb on - strand at 433.138 kb on - strand at 433.159 kb on + strand at 433.220 kb on + strand at 433.222 kb on + strand at 433.240 kb on + strand at 433.241 kb on - strand at 433.433 kb on + strand at 433.493 kb on + strand at 433.512 kb on - strand at 433.528 kb on + strand at 433.528 kb on + strand at 433.529 kb on - strand at 433.650 kb on - strand, within HMPREF1058_RS17465 at 433.857 kb on - strand, within HMPREF1058_RS17465 at 433.882 kb on - strand, within HMPREF1058_RS17465
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 430,479 + HMPREF1058_RS17475 0.77 +0.7 430,480 - HMPREF1058_RS17475 0.77 -0.2 430,524 + HMPREF1058_RS17475 0.78 -0.0 430,571 - HMPREF1058_RS17475 0.80 -0.3 430,571 - HMPREF1058_RS17475 0.80 -1.9 430,596 - HMPREF1058_RS17475 0.81 +0.9 430,674 - HMPREF1058_RS17475 0.83 +1.1 430,724 + HMPREF1058_RS17475 0.85 +1.2 430,754 + HMPREF1058_RS17475 0.86 -1.7 430,769 + HMPREF1058_RS17475 0.86 +1.8 430,837 - HMPREF1058_RS17475 0.88 +0.4 430,885 + HMPREF1058_RS17475 0.90 +0.4 430,894 - +0.3 431,047 - +1.9 431,146 - +0.1 431,213 + +0.0 431,214 - +1.4 431,214 - -1.1 431,224 - -0.3 431,224 - -0.1 431,229 - +1.5 431,244 - -1.2 431,288 - -2.0 431,288 - -0.6 431,325 + +1.2 431,426 + -1.2 431,427 - -0.2 431,430 + +1.1 431,467 + -0.6 431,496 + +0.6 431,497 - +1.0 431,542 + +1.0 431,543 - +2.2 431,559 - +1.5 431,562 - +1.7 431,564 + +0.0 431,565 - +1.7 431,565 - +0.8 431,568 + +3.7 431,568 + +0.5 431,815 - HMPREF1058_RS17470 0.22 +0.7 431,840 + HMPREF1058_RS17470 0.23 -0.9 431,840 + HMPREF1058_RS17470 0.23 +1.1 431,841 - HMPREF1058_RS17470 0.23 +1.9 431,852 + HMPREF1058_RS17470 0.24 +2.5 431,852 + HMPREF1058_RS17470 0.24 +1.9 431,853 - HMPREF1058_RS17470 0.24 +0.2 431,853 - HMPREF1058_RS17470 0.24 +1.2 431,949 - HMPREF1058_RS17470 0.30 +0.8 431,967 + HMPREF1058_RS17470 0.31 +0.8 431,968 - HMPREF1058_RS17470 0.31 +1.1 431,976 + HMPREF1058_RS17470 0.32 +1.0 431,977 - HMPREF1058_RS17470 0.32 +2.1 431,988 - HMPREF1058_RS17470 0.32 +1.8 432,213 - +2.4 432,213 - HMPREF1058_RS17470 0.47 -0.6 432,452 + HMPREF1058_RS17470 0.61 +0.4 432,452 + HMPREF1058_RS17470 0.61 -0.3 432,659 + HMPREF1058_RS17470 0.74 +0.9 432,667 - HMPREF1058_RS17470 0.75 -0.3 432,668 + HMPREF1058_RS17470 0.75 +0.5 432,668 + HMPREF1058_RS17470 0.75 +1.8 432,668 + HMPREF1058_RS17470 0.75 -0.5 432,749 - HMPREF1058_RS17470 0.80 +2.0 432,788 + HMPREF1058_RS17470 0.82 +0.1 432,795 - HMPREF1058_RS17470 0.83 +0.4 433,005 - +2.0 433,138 - +2.7 433,159 + +0.3 433,220 + +0.4 433,222 + +0.4 433,240 + -0.5 433,241 - +0.6 433,433 + +1.1 433,493 + -1.3 433,512 - +0.7 433,528 + -0.7 433,528 + -0.0 433,529 - -0.2 433,650 - HMPREF1058_RS17465 0.11 +0.2 433,857 - HMPREF1058_RS17465 0.16 -2.9 433,882 - HMPREF1058_RS17465 0.17 -0.6
Or see this region's nucleotide sequence