Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17215 and HMPREF1058_RS17210 are separated by 111 nucleotides HMPREF1058_RS17210 and HMPREF1058_RS17205 are separated by 259 nucleotides HMPREF1058_RS17205 and HMPREF1058_RS17200 are separated by 3 nucleotides HMPREF1058_RS17200 and HMPREF1058_RS17195 are separated by 1 nucleotides HMPREF1058_RS17195 and HMPREF1058_RS17190 overlap by 53 nucleotides
HMPREF1058_RS17215: HMPREF1058_RS17215 - DEAD/DEAH box helicase, at 501,709 to 504,126
_RS17215
HMPREF1058_RS17210: HMPREF1058_RS17210 - tRNA-Thr, at 504,238 to 504,311
_RS17210
HMPREF1058_RS17205: HMPREF1058_RS17205 - DUF4199 domain-containing protein, at 504,571 to 505,104
_RS17205
HMPREF1058_RS17200: HMPREF1058_RS17200 - glycosyltransferase family 2 protein, at 505,108 to 506,061
_RS17200
HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611
_RS17195
HMPREF1058_RS17190: HMPREF1058_RS17190 - hypothetical protein, at 506,559 to 507,260
_RS17190
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 504.141 kb on - strand at 504.141 kb on - strand at 504.153 kb on + strand at 504.168 kb on + strand at 504.183 kb on + strand at 504.183 kb on + strand at 504.185 kb on + strand at 504.515 kb on + strand at 504.515 kb on + strand at 504.519 kb on + strand at 504.519 kb on + strand at 504.713 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.817 kb on + strand, within HMPREF1058_RS17205 at 504.819 kb on + strand, within HMPREF1058_RS17205 at 504.983 kb on + strand, within HMPREF1058_RS17205 at 506.073 kb on + strand at 506.083 kb on + strand at 506.205 kb on + strand, within HMPREF1058_RS17195 at 506.369 kb on + strand, within HMPREF1058_RS17195 at 506.450 kb on + strand, within HMPREF1058_RS17195 at 506.463 kb on + strand, within HMPREF1058_RS17195 at 506.516 kb on + strand, within HMPREF1058_RS17195 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.852 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.938 kb on + strand, within HMPREF1058_RS17190 at 506.983 kb on + strand, within HMPREF1058_RS17190 at 507.039 kb on + strand, within HMPREF1058_RS17190
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 504,141 - -0.7 504,141 - +2.4 504,153 + -0.3 504,168 + +0.6 504,183 + +1.5 504,183 + +1.0 504,185 + -0.7 504,515 + -0.5 504,515 + +0.6 504,519 + -0.7 504,519 + +1.5 504,713 + HMPREF1058_RS17205 0.27 -0.2 504,817 + HMPREF1058_RS17205 0.46 -0.2 504,817 + HMPREF1058_RS17205 0.46 -0.5 504,817 + HMPREF1058_RS17205 0.46 -0.7 504,819 + HMPREF1058_RS17205 0.46 +0.6 504,983 + HMPREF1058_RS17205 0.77 -0.2 506,073 + +1.6 506,083 + -2.1 506,205 + HMPREF1058_RS17195 0.26 -0.5 506,369 + HMPREF1058_RS17195 0.56 -0.3 506,450 + HMPREF1058_RS17195 0.70 +2.0 506,463 + HMPREF1058_RS17195 0.73 +0.9 506,516 + HMPREF1058_RS17195 0.83 +1.6 506,696 + HMPREF1058_RS17190 0.20 -1.4 506,696 + HMPREF1058_RS17190 0.20 -1.7 506,750 + HMPREF1058_RS17190 0.27 -1.1 506,750 + HMPREF1058_RS17190 0.27 -2.0 506,852 + HMPREF1058_RS17190 0.42 -2.9 506,854 + HMPREF1058_RS17190 0.42 -1.0 506,854 + HMPREF1058_RS17190 0.42 -2.4 506,938 + HMPREF1058_RS17190 0.54 -2.1 506,983 + HMPREF1058_RS17190 0.60 -1.7 507,039 + HMPREF1058_RS17190 0.68 -1.1
Or see this region's nucleotide sequence