Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17205 and HMPREF1058_RS17200 are separated by 3 nucleotides HMPREF1058_RS17200 and HMPREF1058_RS17195 are separated by 1 nucleotides HMPREF1058_RS17195 and HMPREF1058_RS17190 overlap by 53 nucleotides HMPREF1058_RS17190 and HMPREF1058_RS17185 are separated by 3 nucleotides
HMPREF1058_RS17205: HMPREF1058_RS17205 - DUF4199 domain-containing protein, at 504,571 to 505,104
_RS17205
HMPREF1058_RS17200: HMPREF1058_RS17200 - glycosyltransferase family 2 protein, at 505,108 to 506,061
_RS17200
HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611
_RS17195
HMPREF1058_RS17190: HMPREF1058_RS17190 - hypothetical protein, at 506,559 to 507,260
_RS17190
HMPREF1058_RS17185: HMPREF1058_RS17185 - manganese efflux pump, at 507,264 to 507,836
_RS17185
Position (kb) 506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.073 kb on + strand at 506.083 kb on + strand at 506.205 kb on + strand, within HMPREF1058_RS17195 at 506.369 kb on + strand, within HMPREF1058_RS17195 at 506.450 kb on + strand, within HMPREF1058_RS17195 at 506.463 kb on + strand, within HMPREF1058_RS17195 at 506.516 kb on + strand, within HMPREF1058_RS17195 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.852 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.938 kb on + strand, within HMPREF1058_RS17190 at 506.983 kb on + strand, within HMPREF1058_RS17190 at 507.039 kb on + strand, within HMPREF1058_RS17190 at 507.094 kb on + strand, within HMPREF1058_RS17190 at 507.243 kb on + strand at 507.341 kb on + strand, within HMPREF1058_RS17185 at 507.512 kb on + strand, within HMPREF1058_RS17185 at 507.590 kb on + strand, within HMPREF1058_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 506,073 + +1.6 506,083 + -2.1 506,205 + HMPREF1058_RS17195 0.26 -0.5 506,369 + HMPREF1058_RS17195 0.56 -0.3 506,450 + HMPREF1058_RS17195 0.70 +2.0 506,463 + HMPREF1058_RS17195 0.73 +0.9 506,516 + HMPREF1058_RS17195 0.83 +1.6 506,696 + HMPREF1058_RS17190 0.20 -1.4 506,696 + HMPREF1058_RS17190 0.20 -1.7 506,750 + HMPREF1058_RS17190 0.27 -1.1 506,750 + HMPREF1058_RS17190 0.27 -2.0 506,852 + HMPREF1058_RS17190 0.42 -2.9 506,854 + HMPREF1058_RS17190 0.42 -1.0 506,854 + HMPREF1058_RS17190 0.42 -2.4 506,938 + HMPREF1058_RS17190 0.54 -2.1 506,983 + HMPREF1058_RS17190 0.60 -1.7 507,039 + HMPREF1058_RS17190 0.68 -1.1 507,094 + HMPREF1058_RS17190 0.76 +0.0 507,243 + -1.8 507,341 + HMPREF1058_RS17185 0.13 -1.0 507,512 + HMPREF1058_RS17185 0.43 -0.8 507,590 + HMPREF1058_RS17185 0.57 -1.1
Or see this region's nucleotide sequence