Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15965

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15975 and HMPREF1058_RS15970 are separated by 67 nucleotidesHMPREF1058_RS15970 and HMPREF1058_RS15965 are separated by 12 nucleotidesHMPREF1058_RS15965 and HMPREF1058_RS15960 are separated by 74 nucleotidesHMPREF1058_RS15960 and HMPREF1058_RS15955 are separated by 205 nucleotides HMPREF1058_RS15975: HMPREF1058_RS15975 - saccharopine dehydrogenase family protein, at 793,011 to 794,204 _RS15975 HMPREF1058_RS15970: HMPREF1058_RS15970 - thioredoxin-dependent thiol peroxidase, at 794,272 to 794,718 _RS15970 HMPREF1058_RS15965: HMPREF1058_RS15965 - recombinase RecA, at 794,731 to 795,774 _RS15965 HMPREF1058_RS15960: HMPREF1058_RS15960 - DUF4923 family protein, at 795,849 to 796,445 _RS15960 HMPREF1058_RS15955: HMPREF1058_RS15955 - RagB/SusD family nutrient uptake outer membrane protein, at 796,651 to 798,366 _RS15955 Position (kb) 794 795 796Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 793.922 kb on + strand, within HMPREF1058_RS15975at 793.964 kb on + strand, within HMPREF1058_RS15975at 793.969 kb on - strand, within HMPREF1058_RS15975at 793.969 kb on - strand, within HMPREF1058_RS15975at 793.969 kb on - strand, within HMPREF1058_RS15975at 793.969 kb on - strand, within HMPREF1058_RS15975at 793.972 kb on - strand, within HMPREF1058_RS15975at 793.978 kb on - strand, within HMPREF1058_RS15975at 794.030 kb on - strand, within HMPREF1058_RS15975at 794.034 kb on + strand, within HMPREF1058_RS15975at 794.036 kb on + strand, within HMPREF1058_RS15975at 794.037 kb on - strand, within HMPREF1058_RS15975at 794.113 kb on + strandat 794.179 kb on + strandat 794.224 kb on + strandat 794.224 kb on + strandat 794.280 kb on - strandat 794.360 kb on + strand, within HMPREF1058_RS15970at 794.363 kb on + strand, within HMPREF1058_RS15970at 794.363 kb on + strand, within HMPREF1058_RS15970at 794.427 kb on + strand, within HMPREF1058_RS15970at 794.522 kb on + strand, within HMPREF1058_RS15970at 794.596 kb on + strand, within HMPREF1058_RS15970at 794.608 kb on + strand, within HMPREF1058_RS15970at 794.608 kb on + strand, within HMPREF1058_RS15970at 794.609 kb on - strand, within HMPREF1058_RS15970at 794.626 kb on - strand, within HMPREF1058_RS15970at 794.664 kb on + strand, within HMPREF1058_RS15970at 794.664 kb on + strand, within HMPREF1058_RS15970at 794.665 kb on - strand, within HMPREF1058_RS15970at 794.964 kb on - strand, within HMPREF1058_RS15965at 795.119 kb on + strand, within HMPREF1058_RS15965at 795.252 kb on + strand, within HMPREF1058_RS15965at 795.312 kb on + strand, within HMPREF1058_RS15965at 795.312 kb on + strand, within HMPREF1058_RS15965at 795.345 kb on + strand, within HMPREF1058_RS15965at 795.609 kb on - strand, within HMPREF1058_RS15965at 795.620 kb on + strand, within HMPREF1058_RS15965at 795.650 kb on - strand, within HMPREF1058_RS15965at 795.822 kb on + strandat 795.825 kb on + strandat 795.839 kb on + strandat 795.844 kb on + strandat 795.886 kb on + strandat 795.902 kb on + strandat 795.903 kb on - strandat 796.035 kb on + strand, within HMPREF1058_RS15960at 796.055 kb on + strand, within HMPREF1058_RS15960at 796.087 kb on + strand, within HMPREF1058_RS15960at 796.088 kb on - strand, within HMPREF1058_RS15960at 796.120 kb on + strand, within HMPREF1058_RS15960at 796.121 kb on - strand, within HMPREF1058_RS15960at 796.148 kb on + strand, within HMPREF1058_RS15960at 796.149 kb on - strand, within HMPREF1058_RS15960at 796.276 kb on - strand, within HMPREF1058_RS15960at 796.276 kb on - strand, within HMPREF1058_RS15960at 796.279 kb on + strand, within HMPREF1058_RS15960at 796.289 kb on + strand, within HMPREF1058_RS15960at 796.294 kb on - strand, within HMPREF1058_RS15960at 796.294 kb on - strand, within HMPREF1058_RS15960at 796.298 kb on + strand, within HMPREF1058_RS15960at 796.356 kb on - strand, within HMPREF1058_RS15960at 796.412 kb on + strandat 796.451 kb on - strandat 796.505 kb on - strandat 796.505 kb on - strandat 796.526 kb on + strandat 796.599 kb on + strandat 796.599 kb on + strandat 796.600 kb on - strandat 796.603 kb on + strandat 796.648 kb on - strandat 796.650 kb on - strandat 796.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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793,922 + HMPREF1058_RS15975 0.76 +1.5
793,964 + HMPREF1058_RS15975 0.80 -0.9
793,969 - HMPREF1058_RS15975 0.80 +0.2
793,969 - HMPREF1058_RS15975 0.80 -1.3
793,969 - HMPREF1058_RS15975 0.80 +3.6
793,969 - HMPREF1058_RS15975 0.80 -0.2
793,972 - HMPREF1058_RS15975 0.80 +0.5
793,978 - HMPREF1058_RS15975 0.81 +2.1
794,030 - HMPREF1058_RS15975 0.85 -0.2
794,034 + HMPREF1058_RS15975 0.86 +1.0
794,036 + HMPREF1058_RS15975 0.86 -0.1
794,037 - HMPREF1058_RS15975 0.86 -1.0
794,113 + +4.3
794,179 + -1.3
794,224 + +1.9
794,224 + +1.2
794,280 - -1.8
794,360 + HMPREF1058_RS15970 0.20 -0.5
794,363 + HMPREF1058_RS15970 0.20 +0.5
794,363 + HMPREF1058_RS15970 0.20 -1.8
794,427 + HMPREF1058_RS15970 0.35 -0.4
794,522 + HMPREF1058_RS15970 0.56 -0.2
794,596 + HMPREF1058_RS15970 0.72 -0.4
794,608 + HMPREF1058_RS15970 0.75 +0.6
794,608 + HMPREF1058_RS15970 0.75 +0.7
794,609 - HMPREF1058_RS15970 0.75 +0.2
794,626 - HMPREF1058_RS15970 0.79 -1.4
794,664 + HMPREF1058_RS15970 0.88 -1.3
794,664 + HMPREF1058_RS15970 0.88 -1.4
794,665 - HMPREF1058_RS15970 0.88 -1.5
794,964 - HMPREF1058_RS15965 0.22 -0.8
795,119 + HMPREF1058_RS15965 0.37 -0.8
795,252 + HMPREF1058_RS15965 0.50 -2.7
795,312 + HMPREF1058_RS15965 0.56 -1.7
795,312 + HMPREF1058_RS15965 0.56 -1.3
795,345 + HMPREF1058_RS15965 0.59 -1.2
795,609 - HMPREF1058_RS15965 0.84 +1.2
795,620 + HMPREF1058_RS15965 0.85 -1.5
795,650 - HMPREF1058_RS15965 0.88 -1.0
795,822 + -0.1
795,825 + +0.7
795,839 + +0.3
795,844 + +0.2
795,886 + -1.5
795,902 + +0.6
795,903 - +1.0
796,035 + HMPREF1058_RS15960 0.31 +0.2
796,055 + HMPREF1058_RS15960 0.35 -1.1
796,087 + HMPREF1058_RS15960 0.40 -2.2
796,088 - HMPREF1058_RS15960 0.40 -0.4
796,120 + HMPREF1058_RS15960 0.45 -0.5
796,121 - HMPREF1058_RS15960 0.46 +0.5
796,148 + HMPREF1058_RS15960 0.50 +0.6
796,149 - HMPREF1058_RS15960 0.50 +1.2
796,276 - HMPREF1058_RS15960 0.72 -1.7
796,276 - HMPREF1058_RS15960 0.72 +0.0
796,279 + HMPREF1058_RS15960 0.72 +1.5
796,289 + HMPREF1058_RS15960 0.74 +0.0
796,294 - HMPREF1058_RS15960 0.75 -0.9
796,294 - HMPREF1058_RS15960 0.75 -2.3
796,298 + HMPREF1058_RS15960 0.75 -0.5
796,356 - HMPREF1058_RS15960 0.85 -0.8
796,412 + +0.8
796,451 - +0.9
796,505 - -0.1
796,505 - -0.5
796,526 + -1.6
796,599 + -0.1
796,599 + -0.8
796,600 - -0.4
796,603 + -1.0
796,648 - +0.2
796,650 - -1.5
796,699 - +0.8

Or see this region's nucleotide sequence