Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15930 and HMPREF1058_RS15925 are separated by 5 nucleotides HMPREF1058_RS15925 and HMPREF1058_RS15920 are separated by 221 nucleotides HMPREF1058_RS15920 and HMPREF1058_RS15915 are separated by 22 nucleotides
HMPREF1058_RS15930: HMPREF1058_RS15930 - endonuclease, at 806,067 to 807,077
_RS15930
HMPREF1058_RS15925: HMPREF1058_RS15925 - aminoacyl-histidine dipeptidase, at 807,083 to 808,540
_RS15925
HMPREF1058_RS15920: HMPREF1058_RS15920 - hypothetical protein, at 808,762 to 808,989
_RS15920
HMPREF1058_RS15915: HMPREF1058_RS15915 - OmpH family outer membrane protein, at 809,012 to 809,626
_RS15915
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 806.100 kb on + strand at 806.125 kb on + strand at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.234 kb on + strand, within HMPREF1058_RS15930 at 806.237 kb on + strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.308 kb on + strand, within HMPREF1058_RS15930 at 806.341 kb on + strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.394 kb on - strand, within HMPREF1058_RS15930 at 806.406 kb on - strand, within HMPREF1058_RS15930 at 806.645 kb on + strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.648 kb on - strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.993 kb on + strand at 806.995 kb on + strand at 807.085 kb on - strand at 807.096 kb on - strand at 807.097 kb on + strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.134 kb on - strand at 807.138 kb on - strand at 807.142 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.187 kb on + strand at 807.188 kb on - strand at 807.188 kb on - strand at 807.518 kb on + strand, within HMPREF1058_RS15925 at 807.519 kb on - strand, within HMPREF1058_RS15925 at 807.549 kb on + strand, within HMPREF1058_RS15925 at 807.605 kb on - strand, within HMPREF1058_RS15925 at 807.609 kb on - strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.697 kb on - strand, within HMPREF1058_RS15925 at 807.736 kb on + strand, within HMPREF1058_RS15925 at 807.818 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.823 kb on + strand, within HMPREF1058_RS15925 at 807.881 kb on - strand, within HMPREF1058_RS15925 at 807.886 kb on + strand, within HMPREF1058_RS15925 at 807.970 kb on - strand, within HMPREF1058_RS15925 at 807.988 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.213 kb on + strand, within HMPREF1058_RS15925 at 808.214 kb on - strand, within HMPREF1058_RS15925 at 808.216 kb on + strand, within HMPREF1058_RS15925 at 808.309 kb on + strand, within HMPREF1058_RS15925 at 808.313 kb on + strand, within HMPREF1058_RS15925 at 808.314 kb on - strand, within HMPREF1058_RS15925 at 808.315 kb on + strand, within HMPREF1058_RS15925 at 808.316 kb on - strand, within HMPREF1058_RS15925 at 808.372 kb on + strand, within HMPREF1058_RS15925 at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.488 kb on - strand at 808.524 kb on - strand at 808.540 kb on + strand at 808.540 kb on + strand at 808.541 kb on - strand at 808.603 kb on - strand at 808.603 kb on - strand at 808.607 kb on - strand at 808.665 kb on - strand at 808.770 kb on + strand at 808.781 kb on + strand at 808.781 kb on + strand at 808.782 kb on - strand at 808.836 kb on - strand, within HMPREF1058_RS15920 at 808.872 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand, within HMPREF1058_RS15920 at 808.896 kb on - strand, within HMPREF1058_RS15920 at 808.983 kb on + strand at 808.984 kb on - strand at 808.987 kb on + strand at 809.052 kb on + strand at 809.158 kb on - strand, within HMPREF1058_RS15915 at 809.163 kb on - strand, within HMPREF1058_RS15915 at 809.188 kb on + strand, within HMPREF1058_RS15915 at 809.257 kb on - strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 806,100 + -0.7 806,125 + -1.9 806,203 - HMPREF1058_RS15930 0.13 -1.4 806,203 - HMPREF1058_RS15930 0.13 +2.5 806,234 + HMPREF1058_RS15930 0.17 -0.4 806,237 + HMPREF1058_RS15930 0.17 -1.1 806,238 - HMPREF1058_RS15930 0.17 +0.2 806,238 - HMPREF1058_RS15930 0.17 -0.1 806,308 + HMPREF1058_RS15930 0.24 -0.0 806,341 + HMPREF1058_RS15930 0.27 -1.0 806,359 - HMPREF1058_RS15930 0.29 -0.5 806,359 - HMPREF1058_RS15930 0.29 -0.1 806,394 - HMPREF1058_RS15930 0.32 +0.5 806,406 - HMPREF1058_RS15930 0.34 +0.1 806,645 + HMPREF1058_RS15930 0.57 -0.6 806,646 - HMPREF1058_RS15930 0.57 +0.4 806,646 - HMPREF1058_RS15930 0.57 +0.3 806,648 - HMPREF1058_RS15930 0.57 -1.3 806,698 + HMPREF1058_RS15930 0.62 -0.5 806,698 + HMPREF1058_RS15930 0.62 -0.0 806,877 + HMPREF1058_RS15930 0.80 +1.5 806,877 + HMPREF1058_RS15930 0.80 +2.1 806,993 + +0.2 806,995 + -1.7 807,085 - -1.4 807,096 - +3.9 807,097 + -1.1 807,108 - -0.1 807,108 - +0.2 807,108 - +0.2 807,134 - +0.4 807,138 - +0.7 807,142 + -1.7 807,142 + -1.0 807,143 - +0.7 807,187 + -0.9 807,188 - +0.5 807,188 - +0.7 807,518 + HMPREF1058_RS15925 0.30 -1.7 807,519 - HMPREF1058_RS15925 0.30 -2.2 807,549 + HMPREF1058_RS15925 0.32 -0.1 807,605 - HMPREF1058_RS15925 0.36 -1.4 807,609 - HMPREF1058_RS15925 0.36 +0.2 807,696 + HMPREF1058_RS15925 0.42 +1.5 807,696 + HMPREF1058_RS15925 0.42 -1.3 807,696 + HMPREF1058_RS15925 0.42 -1.9 807,697 - HMPREF1058_RS15925 0.42 +0.6 807,736 + HMPREF1058_RS15925 0.45 +1.3 807,818 - HMPREF1058_RS15925 0.50 +0.7 807,820 - HMPREF1058_RS15925 0.51 -0.9 807,823 + HMPREF1058_RS15925 0.51 -1.0 807,881 - HMPREF1058_RS15925 0.55 -0.3 807,886 + HMPREF1058_RS15925 0.55 -1.1 807,970 - HMPREF1058_RS15925 0.61 -1.6 807,988 + HMPREF1058_RS15925 0.62 -2.2 808,172 + HMPREF1058_RS15925 0.75 -1.1 808,172 + HMPREF1058_RS15925 0.75 -2.1 808,213 + HMPREF1058_RS15925 0.78 -0.8 808,214 - HMPREF1058_RS15925 0.78 -2.3 808,216 + HMPREF1058_RS15925 0.78 -1.0 808,309 + HMPREF1058_RS15925 0.84 -1.4 808,313 + HMPREF1058_RS15925 0.84 -1.7 808,314 - HMPREF1058_RS15925 0.84 -0.7 808,315 + HMPREF1058_RS15925 0.84 -1.5 808,316 - HMPREF1058_RS15925 0.85 -1.4 808,372 + HMPREF1058_RS15925 0.88 -3.5 808,483 + +0.6 808,483 + -1.0 808,483 + -1.0 808,483 + -2.1 808,483 + -0.3 808,483 + -1.4 808,483 + -3.6 808,484 - +0.7 808,484 - -0.7 808,484 - -1.0 808,488 - -2.1 808,524 - -1.4 808,540 + -1.4 808,540 + -2.6 808,541 - -1.2 808,603 - -0.4 808,603 - +0.3 808,607 - -1.1 808,665 - -0.3 808,770 + +0.5 808,781 + -1.6 808,781 + +0.6 808,782 - -1.2 808,836 - HMPREF1058_RS15920 0.32 -1.2 808,872 + HMPREF1058_RS15920 0.48 -0.1 808,895 + HMPREF1058_RS15920 0.58 -0.8 808,896 - HMPREF1058_RS15920 0.59 -1.0 808,983 + +0.4 808,984 - -1.0 808,987 + +1.2 809,052 + -0.3 809,158 - HMPREF1058_RS15915 0.24 -1.2 809,163 - HMPREF1058_RS15915 0.25 +2.9 809,188 + HMPREF1058_RS15915 0.29 -0.3 809,257 - HMPREF1058_RS15915 0.40 -1.5 809,521 + HMPREF1058_RS15915 0.83 +1.4 809,521 + HMPREF1058_RS15915 0.83 +0.5 809,521 + HMPREF1058_RS15915 0.83 +1.4
Or see this region's nucleotide sequence