Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05965 and HMPREF1058_RS05960 are separated by 401 nucleotides HMPREF1058_RS05960 and HMPREF1058_RS05955 are separated by 8 nucleotides HMPREF1058_RS05955 and HMPREF1058_RS05950 overlap by 4 nucleotides HMPREF1058_RS05950 and HMPREF1058_RS05945 overlap by 4 nucleotides
HMPREF1058_RS05965: HMPREF1058_RS05965 - hypothetical protein, at 40,682 to 41,287
_RS05965
HMPREF1058_RS05960: HMPREF1058_RS05960 - YjbQ family protein, at 41,689 to 42,102
_RS05960
HMPREF1058_RS05955: HMPREF1058_RS05955 - hypothetical protein, at 42,111 to 43,313
_RS05955
HMPREF1058_RS05950: HMPREF1058_RS05950 - ATP-binding cassette domain-containing protein, at 43,310 to 43,954
_RS05950
HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483
_RS05945
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.113 kb on - strand, within HMPREF1058_RS05965 at 41.160 kb on - strand, within HMPREF1058_RS05965 at 41.237 kb on - strand at 41.258 kb on - strand at 41.354 kb on + strand at 41.372 kb on - strand at 41.433 kb on + strand at 41.433 kb on + strand at 41.434 kb on - strand at 41.481 kb on - strand at 41.481 kb on - strand at 41.536 kb on - strand at 41.549 kb on + strand at 41.549 kb on + strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.551 kb on + strand at 41.554 kb on - strand at 41.706 kb on + strand at 41.754 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.879 kb on + strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.973 kb on + strand, within HMPREF1058_RS05960 at 42.045 kb on + strand, within HMPREF1058_RS05960 at 42.106 kb on + strand at 42.107 kb on - strand at 42.120 kb on - strand at 42.129 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.144 kb on - strand at 42.151 kb on - strand at 42.165 kb on - strand at 42.174 kb on + strand at 42.199 kb on - strand at 42.257 kb on + strand, within HMPREF1058_RS05955 at 42.265 kb on + strand, within HMPREF1058_RS05955 at 42.266 kb on - strand, within HMPREF1058_RS05955 at 42.371 kb on - strand, within HMPREF1058_RS05955 at 42.371 kb on - strand, within HMPREF1058_RS05955 at 42.376 kb on - strand, within HMPREF1058_RS05955 at 42.424 kb on + strand, within HMPREF1058_RS05955 at 42.443 kb on + strand, within HMPREF1058_RS05955 at 42.443 kb on + strand, within HMPREF1058_RS05955 at 42.475 kb on - strand, within HMPREF1058_RS05955 at 42.762 kb on - strand, within HMPREF1058_RS05955 at 42.762 kb on - strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.766 kb on - strand, within HMPREF1058_RS05955 at 42.776 kb on + strand, within HMPREF1058_RS05955 at 42.853 kb on + strand, within HMPREF1058_RS05955 at 42.962 kb on + strand, within HMPREF1058_RS05955 at 43.141 kb on - strand, within HMPREF1058_RS05955 at 43.148 kb on - strand, within HMPREF1058_RS05955 at 43.314 kb on - strand at 43.332 kb on + strand at 43.417 kb on + strand, within HMPREF1058_RS05950 at 43.450 kb on + strand, within HMPREF1058_RS05950 at 43.450 kb on + strand, within HMPREF1058_RS05950 at 43.468 kb on + strand, within HMPREF1058_RS05950 at 43.539 kb on - strand, within HMPREF1058_RS05950 at 43.547 kb on - strand, within HMPREF1058_RS05950 at 43.606 kb on + strand, within HMPREF1058_RS05950 at 43.687 kb on + strand, within HMPREF1058_RS05950 at 43.688 kb on - strand, within HMPREF1058_RS05950 at 43.766 kb on - strand, within HMPREF1058_RS05950 at 43.773 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.794 kb on - strand, within HMPREF1058_RS05950 at 43.798 kb on - strand, within HMPREF1058_RS05950 at 43.846 kb on - strand, within HMPREF1058_RS05950 at 43.846 kb on - strand, within HMPREF1058_RS05950 at 43.892 kb on + strand at 43.898 kb on - strand at 43.937 kb on + strand at 43.954 kb on + strand at 43.955 kb on - strand at 43.972 kb on + strand at 44.016 kb on + strand at 44.016 kb on + strand at 44.060 kb on + strand at 44.275 kb on - strand, within HMPREF1058_RS05945
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 41,113 - HMPREF1058_RS05965 0.71 -0.0 41,160 - HMPREF1058_RS05965 0.79 +1.1 41,237 - +0.2 41,258 - +0.4 41,354 + +1.2 41,372 - -0.8 41,433 + -0.8 41,433 + +1.0 41,434 - -0.3 41,481 - +0.4 41,481 - -0.4 41,536 - -0.5 41,549 + +0.7 41,549 + -1.7 41,550 - -3.1 41,550 - -1.4 41,550 - +0.0 41,550 - +0.1 41,550 - -1.8 41,551 + -0.8 41,554 - -0.5 41,706 + -1.8 41,754 - HMPREF1058_RS05960 0.16 +3.7 41,864 - HMPREF1058_RS05960 0.42 +0.2 41,864 - HMPREF1058_RS05960 0.42 +0.1 41,868 + HMPREF1058_RS05960 0.43 -0.4 41,868 + HMPREF1058_RS05960 0.43 +1.3 41,879 + HMPREF1058_RS05960 0.46 -2.8 41,880 - HMPREF1058_RS05960 0.46 -1.4 41,880 - HMPREF1058_RS05960 0.46 +1.5 41,973 + HMPREF1058_RS05960 0.69 -0.6 42,045 + HMPREF1058_RS05960 0.86 -0.9 42,106 + -2.3 42,107 - -2.0 42,120 - -2.5 42,129 + +0.0 42,131 + -2.4 42,131 + +1.6 42,131 + -0.1 42,132 - -1.0 42,132 - -1.3 42,132 - -0.0 42,144 - +0.8 42,151 - +0.9 42,165 - +1.3 42,174 + -0.7 42,199 - -0.4 42,257 + HMPREF1058_RS05955 0.12 +0.1 42,265 + HMPREF1058_RS05955 0.13 +0.3 42,266 - HMPREF1058_RS05955 0.13 +0.1 42,371 - HMPREF1058_RS05955 0.22 +1.1 42,371 - HMPREF1058_RS05955 0.22 +2.0 42,376 - HMPREF1058_RS05955 0.22 +1.8 42,424 + HMPREF1058_RS05955 0.26 -0.7 42,443 + HMPREF1058_RS05955 0.28 +1.2 42,443 + HMPREF1058_RS05955 0.28 +0.7 42,475 - HMPREF1058_RS05955 0.30 +0.2 42,762 - HMPREF1058_RS05955 0.54 +1.6 42,762 - HMPREF1058_RS05955 0.54 +3.5 42,765 + HMPREF1058_RS05955 0.54 +2.2 42,765 + HMPREF1058_RS05955 0.54 +1.0 42,765 + HMPREF1058_RS05955 0.54 -1.0 42,766 - HMPREF1058_RS05955 0.54 +0.2 42,776 + HMPREF1058_RS05955 0.55 +1.8 42,853 + HMPREF1058_RS05955 0.62 -0.6 42,962 + HMPREF1058_RS05955 0.71 -0.9 43,141 - HMPREF1058_RS05955 0.86 -0.3 43,148 - HMPREF1058_RS05955 0.86 -0.6 43,314 - +0.6 43,332 + +0.7 43,417 + HMPREF1058_RS05950 0.17 -0.2 43,450 + HMPREF1058_RS05950 0.22 +0.5 43,450 + HMPREF1058_RS05950 0.22 -1.8 43,468 + HMPREF1058_RS05950 0.24 -1.4 43,539 - HMPREF1058_RS05950 0.36 +1.6 43,547 - HMPREF1058_RS05950 0.37 -0.0 43,606 + HMPREF1058_RS05950 0.46 +1.7 43,687 + HMPREF1058_RS05950 0.58 +1.4 43,688 - HMPREF1058_RS05950 0.59 -1.8 43,766 - HMPREF1058_RS05950 0.71 +1.0 43,773 + HMPREF1058_RS05950 0.72 +2.7 43,793 + HMPREF1058_RS05950 0.75 -0.9 43,793 + HMPREF1058_RS05950 0.75 -0.6 43,793 + HMPREF1058_RS05950 0.75 +0.6 43,794 - HMPREF1058_RS05950 0.75 -0.7 43,798 - HMPREF1058_RS05950 0.76 -1.6 43,846 - HMPREF1058_RS05950 0.83 -0.4 43,846 - HMPREF1058_RS05950 0.83 +0.3 43,892 + +1.3 43,898 - -0.4 43,937 + +0.8 43,954 + +1.0 43,955 - -1.5 43,972 + +0.4 44,016 + +1.2 44,016 + +3.3 44,060 + +0.7 44,275 - HMPREF1058_RS05945 0.21 +0.6
Or see this region's nucleotide sequence