Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04275 and HMPREF1058_RS04270 are separated by 293 nucleotides HMPREF1058_RS04270 and HMPREF1058_RS04265 overlap by 11 nucleotides HMPREF1058_RS04265 and HMPREF1058_RS04260 are separated by 95 nucleotides
HMPREF1058_RS04275: HMPREF1058_RS04275 - RNA-binding protein, at 78,090 to 78,335
_RS04275
HMPREF1058_RS04270: HMPREF1058_RS04270 - ferredoxin, at 78,629 to 79,159
_RS04270
HMPREF1058_RS04265: HMPREF1058_RS04265 - Cof-type HAD-IIB family hydrolase, at 79,149 to 79,955
_RS04265
HMPREF1058_RS04260: HMPREF1058_RS04260 - DNA recombination protein RmuC, at 80,051 to 81,286
_RS04260
Position (kb)
79
80 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 78.162 kb on - strand, within HMPREF1058_RS04275 at 78.195 kb on + strand, within HMPREF1058_RS04275 at 78.237 kb on - strand, within HMPREF1058_RS04275 at 78.246 kb on + strand, within HMPREF1058_RS04275 at 78.256 kb on - strand, within HMPREF1058_RS04275 at 78.265 kb on + strand, within HMPREF1058_RS04275 at 78.276 kb on + strand, within HMPREF1058_RS04275 at 78.277 kb on - strand, within HMPREF1058_RS04275 at 78.307 kb on + strand, within HMPREF1058_RS04275 at 78.307 kb on + strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.308 kb on - strand, within HMPREF1058_RS04275 at 78.380 kb on - strand at 78.392 kb on - strand at 78.400 kb on - strand at 78.573 kb on - strand at 78.575 kb on - strand at 78.583 kb on + strand at 78.615 kb on + strand at 78.626 kb on + strand at 78.712 kb on + strand, within HMPREF1058_RS04270 at 78.870 kb on + strand, within HMPREF1058_RS04270 at 78.871 kb on - strand, within HMPREF1058_RS04270 at 79.211 kb on - strand at 79.230 kb on + strand, within HMPREF1058_RS04265 at 79.271 kb on - strand, within HMPREF1058_RS04265 at 79.275 kb on + strand, within HMPREF1058_RS04265 at 79.280 kb on + strand, within HMPREF1058_RS04265 at 79.281 kb on - strand, within HMPREF1058_RS04265 at 79.350 kb on + strand, within HMPREF1058_RS04265 at 79.383 kb on - strand, within HMPREF1058_RS04265 at 79.402 kb on + strand, within HMPREF1058_RS04265 at 79.402 kb on + strand, within HMPREF1058_RS04265 at 79.447 kb on + strand, within HMPREF1058_RS04265 at 79.448 kb on - strand, within HMPREF1058_RS04265 at 79.448 kb on - strand, within HMPREF1058_RS04265 at 79.489 kb on - strand, within HMPREF1058_RS04265 at 79.508 kb on + strand, within HMPREF1058_RS04265 at 79.519 kb on - strand, within HMPREF1058_RS04265 at 79.582 kb on - strand, within HMPREF1058_RS04265 at 79.582 kb on - strand, within HMPREF1058_RS04265 at 79.585 kb on + strand, within HMPREF1058_RS04265 at 79.585 kb on + strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.586 kb on - strand, within HMPREF1058_RS04265 at 79.664 kb on + strand, within HMPREF1058_RS04265 at 79.664 kb on + strand, within HMPREF1058_RS04265 at 79.664 kb on + strand, within HMPREF1058_RS04265 at 79.681 kb on - strand, within HMPREF1058_RS04265 at 79.681 kb on - strand, within HMPREF1058_RS04265 at 79.732 kb on - strand, within HMPREF1058_RS04265 at 79.758 kb on + strand, within HMPREF1058_RS04265 at 79.759 kb on - strand, within HMPREF1058_RS04265 at 79.759 kb on - strand, within HMPREF1058_RS04265 at 79.760 kb on + strand, within HMPREF1058_RS04265 at 79.763 kb on - strand, within HMPREF1058_RS04265 at 79.874 kb on + strand, within HMPREF1058_RS04265 at 79.955 kb on + strand at 79.955 kb on + strand at 79.955 kb on + strand at 79.956 kb on - strand at 79.956 kb on - strand at 79.957 kb on + strand at 79.960 kb on + strand at 80.095 kb on + strand at 80.113 kb on + strand at 80.240 kb on + strand, within HMPREF1058_RS04260 at 80.241 kb on - strand, within HMPREF1058_RS04260 at 80.241 kb on - strand, within HMPREF1058_RS04260 at 80.264 kb on - strand, within HMPREF1058_RS04260 at 80.389 kb on - strand, within HMPREF1058_RS04260 at 80.529 kb on + strand, within HMPREF1058_RS04260 at 80.686 kb on + strand, within HMPREF1058_RS04260 at 80.689 kb on + strand, within HMPREF1058_RS04260 at 80.689 kb on + strand, within HMPREF1058_RS04260 at 80.701 kb on - strand, within HMPREF1058_RS04260 at 80.702 kb on + strand, within HMPREF1058_RS04260 at 80.736 kb on + strand, within HMPREF1058_RS04260 at 80.736 kb on + strand, within HMPREF1058_RS04260 at 80.737 kb on - strand, within HMPREF1058_RS04260 at 80.849 kb on + strand, within HMPREF1058_RS04260 at 80.850 kb on - strand, within HMPREF1058_RS04260 at 80.850 kb on - strand, within HMPREF1058_RS04260 at 80.909 kb on + strand, within HMPREF1058_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 78,162 - HMPREF1058_RS04275 0.29 -0.6 78,195 + HMPREF1058_RS04275 0.43 -2.1 78,237 - HMPREF1058_RS04275 0.60 +0.1 78,246 + HMPREF1058_RS04275 0.63 +0.5 78,256 - HMPREF1058_RS04275 0.67 -0.9 78,265 + HMPREF1058_RS04275 0.71 -0.5 78,276 + HMPREF1058_RS04275 0.76 -1.5 78,277 - HMPREF1058_RS04275 0.76 -1.6 78,307 + HMPREF1058_RS04275 0.88 -1.7 78,307 + HMPREF1058_RS04275 0.88 -1.8 78,308 - HMPREF1058_RS04275 0.89 -1.1 78,308 - HMPREF1058_RS04275 0.89 +2.8 78,308 - HMPREF1058_RS04275 0.89 +0.5 78,380 - -0.9 78,392 - +3.8 78,400 - -0.3 78,573 - -0.1 78,575 - -1.3 78,583 + -0.4 78,615 + -2.8 78,626 + +1.4 78,712 + HMPREF1058_RS04270 0.16 +2.0 78,870 + HMPREF1058_RS04270 0.45 -0.6 78,871 - HMPREF1058_RS04270 0.46 +2.6 79,211 - +2.6 79,230 + HMPREF1058_RS04265 0.10 -0.9 79,271 - HMPREF1058_RS04265 0.15 -0.3 79,275 + HMPREF1058_RS04265 0.16 -0.9 79,280 + HMPREF1058_RS04265 0.16 -0.4 79,281 - HMPREF1058_RS04265 0.16 -2.7 79,350 + HMPREF1058_RS04265 0.25 +1.1 79,383 - HMPREF1058_RS04265 0.29 -0.2 79,402 + HMPREF1058_RS04265 0.31 -2.2 79,402 + HMPREF1058_RS04265 0.31 -1.4 79,447 + HMPREF1058_RS04265 0.37 -1.3 79,448 - HMPREF1058_RS04265 0.37 -1.4 79,448 - HMPREF1058_RS04265 0.37 +1.4 79,489 - HMPREF1058_RS04265 0.42 -1.4 79,508 + HMPREF1058_RS04265 0.44 +0.4 79,519 - HMPREF1058_RS04265 0.46 -1.1 79,582 - HMPREF1058_RS04265 0.54 -0.8 79,582 - HMPREF1058_RS04265 0.54 -1.4 79,585 + HMPREF1058_RS04265 0.54 -0.4 79,585 + HMPREF1058_RS04265 0.54 +0.5 79,586 - HMPREF1058_RS04265 0.54 -2.3 79,586 - HMPREF1058_RS04265 0.54 -1.4 79,586 - HMPREF1058_RS04265 0.54 -2.5 79,586 - HMPREF1058_RS04265 0.54 -1.3 79,586 - HMPREF1058_RS04265 0.54 -0.9 79,586 - HMPREF1058_RS04265 0.54 -0.1 79,664 + HMPREF1058_RS04265 0.64 +0.4 79,664 + HMPREF1058_RS04265 0.64 -0.3 79,664 + HMPREF1058_RS04265 0.64 +0.2 79,681 - HMPREF1058_RS04265 0.66 +0.9 79,681 - HMPREF1058_RS04265 0.66 -0.9 79,732 - HMPREF1058_RS04265 0.72 -1.1 79,758 + HMPREF1058_RS04265 0.75 -0.7 79,759 - HMPREF1058_RS04265 0.76 -2.0 79,759 - HMPREF1058_RS04265 0.76 -1.2 79,760 + HMPREF1058_RS04265 0.76 -2.0 79,763 - HMPREF1058_RS04265 0.76 -1.1 79,874 + HMPREF1058_RS04265 0.90 +0.1 79,955 + -1.4 79,955 + -1.3 79,955 + -1.3 79,956 - +0.5 79,956 - +0.5 79,957 + -2.4 79,960 + -1.1 80,095 + -0.2 80,113 + -1.2 80,240 + HMPREF1058_RS04260 0.15 +0.3 80,241 - HMPREF1058_RS04260 0.15 +0.1 80,241 - HMPREF1058_RS04260 0.15 -0.9 80,264 - HMPREF1058_RS04260 0.17 +1.1 80,389 - HMPREF1058_RS04260 0.27 +1.8 80,529 + HMPREF1058_RS04260 0.39 -1.8 80,686 + HMPREF1058_RS04260 0.51 +0.5 80,689 + HMPREF1058_RS04260 0.52 -1.1 80,689 + HMPREF1058_RS04260 0.52 -1.2 80,701 - HMPREF1058_RS04260 0.53 -0.9 80,702 + HMPREF1058_RS04260 0.53 -1.9 80,736 + HMPREF1058_RS04260 0.55 -0.8 80,736 + HMPREF1058_RS04260 0.55 -1.3 80,737 - HMPREF1058_RS04260 0.56 +3.2 80,849 + HMPREF1058_RS04260 0.65 -0.6 80,850 - HMPREF1058_RS04260 0.65 -1.6 80,850 - HMPREF1058_RS04260 0.65 +0.0 80,909 + HMPREF1058_RS04260 0.69 +0.3
Or see this region's nucleotide sequence