Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01870 and HMPREF1058_RS01865 are separated by 3 nucleotides HMPREF1058_RS01865 and HMPREF1058_RS0120065 are separated by 80 nucleotides
HMPREF1058_RS01870: HMPREF1058_RS01870 - tape measure protein, at 19,997 to 24,631
_RS01870
HMPREF1058_RS01865: HMPREF1058_RS01865 - hypothetical protein, at 24,635 to 25,051
_RS01865
HMPREF1058_RS0120065: HMPREF1058_RS0120065 - hypothetical protein, at 25,132 to 27,336
_RS0120065
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 24.134 kb on + strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.135 kb on - strand, within HMPREF1058_RS01870 at 24.140 kb on - strand, within HMPREF1058_RS01870 at 24.169 kb on + strand at 24.210 kb on - strand at 24.210 kb on - strand at 24.218 kb on + strand at 24.525 kb on - strand at 24.553 kb on + strand at 24.595 kb on + strand at 24.595 kb on + strand at 24.596 kb on - strand at 24.597 kb on + strand at 24.634 kb on + strand at 24.635 kb on - strand at 24.645 kb on + strand at 24.648 kb on + strand at 24.648 kb on + strand at 24.670 kb on + strand at 24.671 kb on - strand at 24.671 kb on - strand at 24.796 kb on + strand, within HMPREF1058_RS01865 at 24.816 kb on + strand, within HMPREF1058_RS01865 at 24.932 kb on - strand, within HMPREF1058_RS01865 at 24.942 kb on - strand, within HMPREF1058_RS01865 at 25.079 kb on - strand at 25.177 kb on - strand at 25.231 kb on + strand at 25.232 kb on - strand at 25.265 kb on + strand at 25.265 kb on + strand at 25.285 kb on + strand at 25.286 kb on - strand at 25.286 kb on - strand at 25.297 kb on - strand at 25.421 kb on - strand, within HMPREF1058_RS0120065 at 25.479 kb on - strand, within HMPREF1058_RS0120065 at 25.488 kb on + strand, within HMPREF1058_RS0120065 at 25.490 kb on + strand, within HMPREF1058_RS0120065 at 25.490 kb on + strand, within HMPREF1058_RS0120065 at 25.491 kb on - strand, within HMPREF1058_RS0120065 at 25.525 kb on + strand, within HMPREF1058_RS0120065 at 25.526 kb on - strand, within HMPREF1058_RS0120065 at 25.592 kb on - strand, within HMPREF1058_RS0120065 at 25.765 kb on + strand, within HMPREF1058_RS0120065 at 25.891 kb on + strand, within HMPREF1058_RS0120065 at 25.891 kb on + strand, within HMPREF1058_RS0120065 at 26.101 kb on + strand, within HMPREF1058_RS0120065 at 26.101 kb on + strand, within HMPREF1058_RS0120065 at 26.103 kb on + strand, within HMPREF1058_RS0120065 at 26.264 kb on - strand, within HMPREF1058_RS0120065 at 26.423 kb on + strand, within HMPREF1058_RS0120065 at 26.424 kb on - strand, within HMPREF1058_RS0120065 at 26.533 kb on + strand, within HMPREF1058_RS0120065 at 26.534 kb on - strand, within HMPREF1058_RS0120065 at 26.609 kb on - strand, within HMPREF1058_RS0120065 at 26.609 kb on - strand, within HMPREF1058_RS0120065 at 26.611 kb on - strand, within HMPREF1058_RS0120065 at 26.611 kb on - strand, within HMPREF1058_RS0120065 at 26.692 kb on + strand, within HMPREF1058_RS0120065 at 26.719 kb on + strand, within HMPREF1058_RS0120065 at 26.720 kb on - strand, within HMPREF1058_RS0120065 at 26.720 kb on - strand, within HMPREF1058_RS0120065 at 26.720 kb on - strand, within HMPREF1058_RS0120065 at 26.720 kb on - strand, within HMPREF1058_RS0120065 at 26.760 kb on + strand, within HMPREF1058_RS0120065 at 26.768 kb on - strand, within HMPREF1058_RS0120065 at 26.831 kb on + strand, within HMPREF1058_RS0120065 at 26.832 kb on - strand, within HMPREF1058_RS0120065 at 26.909 kb on - strand, within HMPREF1058_RS0120065 at 27.010 kb on + strand, within HMPREF1058_RS0120065 at 27.011 kb on - strand, within HMPREF1058_RS0120065 at 27.012 kb on + strand, within HMPREF1058_RS0120065 at 27.012 kb on + strand, within HMPREF1058_RS0120065 at 27.012 kb on + strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.013 kb on - strand, within HMPREF1058_RS0120065 at 27.015 kb on + strand, within HMPREF1058_RS0120065 at 27.015 kb on + strand, within HMPREF1058_RS0120065 at 27.018 kb on + strand, within HMPREF1058_RS0120065 at 27.019 kb on - strand, within HMPREF1058_RS0120065 at 27.020 kb on + strand, within HMPREF1058_RS0120065 at 27.021 kb on - strand, within HMPREF1058_RS0120065 at 27.077 kb on - strand, within HMPREF1058_RS0120065 at 27.077 kb on - strand, within HMPREF1058_RS0120065 at 27.077 kb on - strand, within HMPREF1058_RS0120065 at 27.079 kb on - strand, within HMPREF1058_RS0120065 at 27.140 kb on + strand at 27.180 kb on + strand at 27.334 kb on + strand at 27.334 kb on + strand at 27.334 kb on + strand at 27.334 kb on + strand at 27.334 kb on + strand at 27.335 kb on - strand at 27.335 kb on - strand at 27.335 kb on - strand at 27.337 kb on - strand at 27.345 kb on - strand at 27.595 kb on + strand at 27.601 kb on + strand at 27.601 kb on + strand at 27.601 kb on + strand at 27.661 kb on - strand at 27.661 kb on - strand at 27.661 kb on - strand at 27.698 kb on + strand at 27.699 kb on - strand at 27.741 kb on - strand at 27.743 kb on + strand at 27.769 kb on - strand at 27.905 kb on - strand at 27.906 kb on + strand at 27.907 kb on - strand at 27.991 kb on - strand at 28.072 kb on - strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.075 kb on + strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.076 kb on - strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.080 kb on - strand at 28.156 kb on + strand at 28.156 kb on + strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.221 kb on + strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 24,134 + HMPREF1058_RS01870 0.89 -0.1 24,135 - HMPREF1058_RS01870 0.89 +0.5 24,135 - HMPREF1058_RS01870 0.89 -2.9 24,135 - HMPREF1058_RS01870 0.89 +0.8 24,140 - HMPREF1058_RS01870 0.89 -0.3 24,169 + -0.3 24,210 - +1.4 24,210 - +0.0 24,218 + -0.9 24,525 - -0.1 24,553 + +0.9 24,595 + +0.1 24,595 + +0.6 24,596 - -1.2 24,597 + +1.1 24,634 + +0.1 24,635 - -0.5 24,645 + +1.8 24,648 + +0.7 24,648 + -0.8 24,670 + +0.4 24,671 - -0.6 24,671 - +0.2 24,796 + HMPREF1058_RS01865 0.39 -0.4 24,816 + HMPREF1058_RS01865 0.43 +0.7 24,932 - HMPREF1058_RS01865 0.71 -2.3 24,942 - HMPREF1058_RS01865 0.74 -2.1 25,079 - +0.1 25,177 - +1.3 25,231 + +0.2 25,232 - +0.3 25,265 + +0.9 25,265 + -1.0 25,285 + +0.8 25,286 - +0.6 25,286 - -1.3 25,297 - -0.1 25,421 - HMPREF1058_RS0120065 0.13 +0.4 25,479 - HMPREF1058_RS0120065 0.16 +1.4 25,488 + HMPREF1058_RS0120065 0.16 +0.8 25,490 + HMPREF1058_RS0120065 0.16 -0.7 25,490 + HMPREF1058_RS0120065 0.16 +1.1 25,491 - HMPREF1058_RS0120065 0.16 -0.9 25,525 + HMPREF1058_RS0120065 0.18 +0.4 25,526 - HMPREF1058_RS0120065 0.18 +0.5 25,592 - HMPREF1058_RS0120065 0.21 +0.6 25,765 + HMPREF1058_RS0120065 0.29 -0.4 25,891 + HMPREF1058_RS0120065 0.34 +0.7 25,891 + HMPREF1058_RS0120065 0.34 -0.0 26,101 + HMPREF1058_RS0120065 0.44 -0.8 26,101 + HMPREF1058_RS0120065 0.44 +0.1 26,103 + HMPREF1058_RS0120065 0.44 +0.9 26,264 - HMPREF1058_RS0120065 0.51 +0.2 26,423 + HMPREF1058_RS0120065 0.59 -0.2 26,424 - HMPREF1058_RS0120065 0.59 -0.6 26,533 + HMPREF1058_RS0120065 0.64 +1.4 26,534 - HMPREF1058_RS0120065 0.64 -1.0 26,609 - HMPREF1058_RS0120065 0.67 +0.7 26,609 - HMPREF1058_RS0120065 0.67 +0.6 26,611 - HMPREF1058_RS0120065 0.67 -2.1 26,611 - HMPREF1058_RS0120065 0.67 +0.9 26,692 + HMPREF1058_RS0120065 0.71 -1.3 26,719 + HMPREF1058_RS0120065 0.72 -0.5 26,720 - HMPREF1058_RS0120065 0.72 -0.6 26,720 - HMPREF1058_RS0120065 0.72 -1.7 26,720 - HMPREF1058_RS0120065 0.72 +1.3 26,720 - HMPREF1058_RS0120065 0.72 +1.1 26,760 + HMPREF1058_RS0120065 0.74 +0.9 26,768 - HMPREF1058_RS0120065 0.74 -0.2 26,831 + HMPREF1058_RS0120065 0.77 -0.4 26,832 - HMPREF1058_RS0120065 0.77 +1.7 26,909 - HMPREF1058_RS0120065 0.81 -0.9 27,010 + HMPREF1058_RS0120065 0.85 +1.2 27,011 - HMPREF1058_RS0120065 0.85 +0.4 27,012 + HMPREF1058_RS0120065 0.85 +1.0 27,012 + HMPREF1058_RS0120065 0.85 -0.9 27,012 + HMPREF1058_RS0120065 0.85 -1.2 27,013 - HMPREF1058_RS0120065 0.85 -0.1 27,013 - HMPREF1058_RS0120065 0.85 -1.0 27,013 - HMPREF1058_RS0120065 0.85 -1.9 27,013 - HMPREF1058_RS0120065 0.85 -0.7 27,013 - HMPREF1058_RS0120065 0.85 +1.4 27,013 - HMPREF1058_RS0120065 0.85 -0.1 27,015 + HMPREF1058_RS0120065 0.85 +0.5 27,015 + HMPREF1058_RS0120065 0.85 -1.5 27,018 + HMPREF1058_RS0120065 0.86 -3.2 27,019 - HMPREF1058_RS0120065 0.86 -0.8 27,020 + HMPREF1058_RS0120065 0.86 +0.4 27,021 - HMPREF1058_RS0120065 0.86 -0.8 27,077 - HMPREF1058_RS0120065 0.88 +0.6 27,077 - HMPREF1058_RS0120065 0.88 +0.9 27,077 - HMPREF1058_RS0120065 0.88 +1.1 27,079 - HMPREF1058_RS0120065 0.88 +0.5 27,140 + -0.8 27,180 + -0.5 27,334 + -0.4 27,334 + -1.3 27,334 + +0.4 27,334 + -1.6 27,334 + +0.8 27,335 - +0.5 27,335 - +0.1 27,335 - -0.7 27,337 - -0.1 27,345 - -1.3 27,595 + -2.2 27,601 + -0.5 27,601 + -1.1 27,601 + +1.6 27,661 - -0.7 27,661 - +1.6 27,661 - +1.5 27,698 + -0.5 27,699 - -2.6 27,741 - +0.5 27,743 + -0.1 27,769 - -1.4 27,905 - -2.1 27,906 + -1.2 27,907 - -1.1 27,991 - -1.0 28,072 - +0.0 28,075 + +0.1 28,075 + +0.4 28,075 + -1.2 28,075 + +1.1 28,075 + +1.1 28,075 + -1.1 28,075 + -0.9 28,075 + +4.3 28,076 - -0.4 28,076 - -0.3 28,076 - +0.7 28,076 - -0.3 28,076 - -0.8 28,076 - +1.4 28,076 - +0.7 28,076 - +1.0 28,076 - -1.2 28,076 - +0.1 28,076 - +0.2 28,076 - -1.2 28,079 + +0.8 28,079 + -0.8 28,080 - +0.1 28,156 + +1.8 28,156 + -0.3 28,220 - +0.3 28,220 - +0.8 28,220 - +0.1 28,220 - -2.6 28,220 - +0.2 28,220 - +1.1 28,221 + -0.7 28,222 - -0.5 28,222 - -1.9 28,222 - -1.9 28,310 + +0.1
Or see this region's nucleotide sequence