Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00250 and HMPREF1058_RS00245 are separated by 35 nucleotides HMPREF1058_RS00245 and HMPREF1058_RS00240 are separated by 100 nucleotides HMPREF1058_RS00240 and HMPREF1058_RS00235 are separated by 68 nucleotides
HMPREF1058_RS00250: HMPREF1058_RS00250 - transposase, at 22,546 to 23,550
_RS00250
HMPREF1058_RS00245: HMPREF1058_RS00245 - DUF5110 domain-containing protein, at 23,586 to 23,849
_RS00245
HMPREF1058_RS00240: HMPREF1058_RS00240 - tRNA-Leu, at 23,950 to 24,031
_RS00240
HMPREF1058_RS00235: HMPREF1058_RS00235 - S41 family peptidase, at 24,100 to 25,128
_RS00235
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 23.637 kb on + strand, within HMPREF1058_RS00245 at 23.658 kb on + strand, within HMPREF1058_RS00245 at 23.660 kb on + strand, within HMPREF1058_RS00245 at 23.661 kb on - strand, within HMPREF1058_RS00245 at 23.661 kb on - strand, within HMPREF1058_RS00245 at 23.679 kb on + strand, within HMPREF1058_RS00245 at 23.680 kb on - strand, within HMPREF1058_RS00245 at 23.817 kb on + strand, within HMPREF1058_RS00245 at 23.874 kb on - strand at 23.937 kb on - strand at 24.081 kb on - strand at 24.118 kb on + strand at 24.147 kb on + strand at 24.151 kb on + strand at 24.151 kb on + strand at 24.152 kb on - strand at 24.152 kb on - strand at 24.236 kb on + strand, within HMPREF1058_RS00235 at 24.237 kb on - strand, within HMPREF1058_RS00235 at 24.237 kb on - strand, within HMPREF1058_RS00235 at 24.339 kb on + strand, within HMPREF1058_RS00235 at 24.344 kb on - strand, within HMPREF1058_RS00235 at 24.428 kb on - strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.582 kb on + strand, within HMPREF1058_RS00235 at 24.616 kb on - strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.686 kb on + strand, within HMPREF1058_RS00235 at 24.691 kb on + strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.706 kb on + strand, within HMPREF1058_RS00235 at 24.737 kb on + strand, within HMPREF1058_RS00235 at 24.749 kb on - strand, within HMPREF1058_RS00235 at 24.753 kb on - strand, within HMPREF1058_RS00235 at 24.753 kb on - strand, within HMPREF1058_RS00235 at 24.842 kb on - strand, within HMPREF1058_RS00235 at 24.939 kb on - strand, within HMPREF1058_RS00235 at 24.941 kb on - strand, within HMPREF1058_RS00235
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 23,637 + HMPREF1058_RS00245 0.19 +0.9 23,658 + HMPREF1058_RS00245 0.27 +1.5 23,660 + HMPREF1058_RS00245 0.28 +2.3 23,661 - HMPREF1058_RS00245 0.28 +0.4 23,661 - HMPREF1058_RS00245 0.28 +0.0 23,679 + HMPREF1058_RS00245 0.35 +0.8 23,680 - HMPREF1058_RS00245 0.36 +0.2 23,817 + HMPREF1058_RS00245 0.88 +0.0 23,874 - -1.8 23,937 - +6.7 24,081 - +4.5 24,118 + -0.3 24,147 + +0.0 24,151 + +0.0 24,151 + -0.6 24,152 - +0.7 24,152 - -1.0 24,236 + HMPREF1058_RS00235 0.13 -1.7 24,237 - HMPREF1058_RS00235 0.13 +0.1 24,237 - HMPREF1058_RS00235 0.13 +0.7 24,339 + HMPREF1058_RS00235 0.23 +0.5 24,344 - HMPREF1058_RS00235 0.24 +1.0 24,428 - HMPREF1058_RS00235 0.32 +1.0 24,507 + HMPREF1058_RS00235 0.40 -1.2 24,507 + HMPREF1058_RS00235 0.40 -0.5 24,507 + HMPREF1058_RS00235 0.40 +0.1 24,507 + HMPREF1058_RS00235 0.40 -0.4 24,508 - HMPREF1058_RS00235 0.40 -0.7 24,508 - HMPREF1058_RS00235 0.40 +0.8 24,508 - HMPREF1058_RS00235 0.40 +0.8 24,582 + HMPREF1058_RS00235 0.47 -1.8 24,616 - HMPREF1058_RS00235 0.50 +0.6 24,684 + HMPREF1058_RS00235 0.57 -0.2 24,684 + HMPREF1058_RS00235 0.57 +0.8 24,684 + HMPREF1058_RS00235 0.57 -0.4 24,686 + HMPREF1058_RS00235 0.57 +0.8 24,691 + HMPREF1058_RS00235 0.57 -0.6 24,692 - HMPREF1058_RS00235 0.58 -1.1 24,692 - HMPREF1058_RS00235 0.58 -0.0 24,692 - HMPREF1058_RS00235 0.58 -0.5 24,706 + HMPREF1058_RS00235 0.59 +0.7 24,737 + HMPREF1058_RS00235 0.62 -0.9 24,749 - HMPREF1058_RS00235 0.63 -1.1 24,753 - HMPREF1058_RS00235 0.63 +0.5 24,753 - HMPREF1058_RS00235 0.63 +1.4 24,842 - HMPREF1058_RS00235 0.72 +0.4 24,939 - HMPREF1058_RS00235 0.82 -0.4 24,941 - HMPREF1058_RS00235 0.82 -0.6
Or see this region's nucleotide sequence