Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19010 and HMPREF1058_RS19005 are separated by 145 nucleotides HMPREF1058_RS19005 and HMPREF1058_RS19000 are separated by 6 nucleotides HMPREF1058_RS19000 and HMPREF1058_RS18995 are separated by 246 nucleotides HMPREF1058_RS18995 and HMPREF1058_RS18990 are separated by 2 nucleotides
HMPREF1058_RS19010: HMPREF1058_RS19010 - M48 family metallopeptidase, at 33,155 to 33,940
_RS19010
HMPREF1058_RS19005: HMPREF1058_RS19005 - HigA family addiction module antidote protein, at 34,086 to 34,430
_RS19005
HMPREF1058_RS19000: HMPREF1058_RS19000 - type II toxin-antitoxin system RelE/ParE family toxin, at 34,437 to 34,754
_RS19000
HMPREF1058_RS18995: HMPREF1058_RS18995 - hypothetical protein, at 35,001 to 35,255
_RS18995
HMPREF1058_RS18990: HMPREF1058_RS18990 - hypothetical protein, at 35,258 to 35,851
_RS18990
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.141 kb on - strand at 33.148 kb on + strand at 33.198 kb on - strand at 33.198 kb on - strand at 33.296 kb on - strand, within HMPREF1058_RS19010 at 33.544 kb on - strand, within HMPREF1058_RS19010 at 33.544 kb on - strand, within HMPREF1058_RS19010 at 33.621 kb on - strand, within HMPREF1058_RS19010 at 33.686 kb on - strand, within HMPREF1058_RS19010 at 33.686 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.692 kb on + strand, within HMPREF1058_RS19010 at 33.758 kb on + strand, within HMPREF1058_RS19010 at 33.759 kb on - strand, within HMPREF1058_RS19010 at 33.770 kb on - strand, within HMPREF1058_RS19010 at 33.791 kb on + strand, within HMPREF1058_RS19010 at 33.869 kb on - strand at 33.869 kb on - strand at 33.932 kb on + strand at 33.935 kb on - strand at 33.988 kb on + strand at 34.028 kb on - strand at 34.030 kb on - strand at 34.055 kb on + strand at 34.055 kb on + strand at 34.056 kb on - strand at 34.056 kb on - strand at 34.056 kb on - strand at 34.056 kb on - strand at 34.069 kb on + strand at 34.467 kb on - strand at 34.512 kb on - strand, within HMPREF1058_RS19000 at 34.598 kb on - strand, within HMPREF1058_RS19000 at 34.642 kb on - strand, within HMPREF1058_RS19000 at 34.653 kb on - strand, within HMPREF1058_RS19000 at 34.653 kb on - strand, within HMPREF1058_RS19000 at 34.655 kb on - strand, within HMPREF1058_RS19000 at 34.655 kb on - strand, within HMPREF1058_RS19000 at 34.659 kb on - strand, within HMPREF1058_RS19000 at 34.715 kb on - strand, within HMPREF1058_RS19000 at 34.789 kb on - strand at 34.863 kb on - strand at 34.866 kb on + strand at 34.872 kb on - strand at 34.898 kb on + strand at 34.909 kb on + strand at 35.001 kb on - strand at 35.007 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.019 kb on - strand at 35.039 kb on - strand, within HMPREF1058_RS18995 at 35.078 kb on + strand, within HMPREF1058_RS18995 at 35.078 kb on + strand, within HMPREF1058_RS18995 at 35.105 kb on + strand, within HMPREF1058_RS18995 at 35.110 kb on - strand, within HMPREF1058_RS18995 at 35.152 kb on + strand, within HMPREF1058_RS18995 at 35.172 kb on - strand, within HMPREF1058_RS18995 at 35.184 kb on - strand, within HMPREF1058_RS18995 at 35.281 kb on + strand at 35.282 kb on - strand at 35.289 kb on - strand at 35.289 kb on - strand at 35.289 kb on - strand at 35.299 kb on - strand at 35.324 kb on + strand, within HMPREF1058_RS18990 at 35.324 kb on + strand, within HMPREF1058_RS18990 at 35.326 kb on + strand, within HMPREF1058_RS18990 at 35.327 kb on - strand, within HMPREF1058_RS18990 at 35.333 kb on + strand, within HMPREF1058_RS18990 at 35.334 kb on - strand, within HMPREF1058_RS18990 at 35.334 kb on - strand, within HMPREF1058_RS18990 at 35.381 kb on + strand, within HMPREF1058_RS18990 at 35.404 kb on + strand, within HMPREF1058_RS18990 at 35.407 kb on - strand, within HMPREF1058_RS18990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 33,141 - +4.0 33,148 + -1.2 33,198 - +1.2 33,198 - +1.9 33,296 - HMPREF1058_RS19010 0.18 +0.0 33,544 - HMPREF1058_RS19010 0.49 -2.8 33,544 - HMPREF1058_RS19010 0.49 -0.8 33,621 - HMPREF1058_RS19010 0.59 -1.7 33,686 - HMPREF1058_RS19010 0.68 +0.9 33,686 - HMPREF1058_RS19010 0.68 -2.2 33,688 - HMPREF1058_RS19010 0.68 -1.0 33,688 - HMPREF1058_RS19010 0.68 -0.4 33,688 - HMPREF1058_RS19010 0.68 -0.6 33,692 + HMPREF1058_RS19010 0.68 -0.2 33,758 + HMPREF1058_RS19010 0.77 -0.3 33,759 - HMPREF1058_RS19010 0.77 -1.0 33,770 - HMPREF1058_RS19010 0.78 +0.2 33,791 + HMPREF1058_RS19010 0.81 -0.3 33,869 - -1.0 33,869 - +0.2 33,932 + -1.0 33,935 - +0.8 33,988 + -0.9 34,028 - +0.2 34,030 - -2.1 34,055 + +0.1 34,055 + -2.3 34,056 - -0.7 34,056 - -0.6 34,056 - -0.2 34,056 - -0.5 34,069 + +0.1 34,467 - -2.7 34,512 - HMPREF1058_RS19000 0.24 +0.1 34,598 - HMPREF1058_RS19000 0.51 -0.5 34,642 - HMPREF1058_RS19000 0.64 -0.4 34,653 - HMPREF1058_RS19000 0.68 +0.3 34,653 - HMPREF1058_RS19000 0.68 -2.0 34,655 - HMPREF1058_RS19000 0.69 -0.6 34,655 - HMPREF1058_RS19000 0.69 +1.5 34,659 - HMPREF1058_RS19000 0.70 +1.1 34,715 - HMPREF1058_RS19000 0.87 +0.2 34,789 - -0.4 34,863 - -1.7 34,866 + -0.1 34,872 - -1.6 34,898 + -0.8 34,909 + +0.3 35,001 - -0.3 35,007 - -1.3 35,009 - -1.0 35,009 - +1.3 35,009 - +0.7 35,009 - +0.1 35,019 - +0.9 35,039 - HMPREF1058_RS18995 0.15 +1.0 35,078 + HMPREF1058_RS18995 0.30 -0.5 35,078 + HMPREF1058_RS18995 0.30 -0.2 35,105 + HMPREF1058_RS18995 0.41 -0.6 35,110 - HMPREF1058_RS18995 0.43 -1.2 35,152 + HMPREF1058_RS18995 0.59 -0.9 35,172 - HMPREF1058_RS18995 0.67 -0.4 35,184 - HMPREF1058_RS18995 0.72 -0.9 35,281 + -1.3 35,282 - -0.8 35,289 - +0.8 35,289 - +1.1 35,289 - -0.1 35,299 - +0.8 35,324 + HMPREF1058_RS18990 0.11 -1.6 35,324 + HMPREF1058_RS18990 0.11 -2.2 35,326 + HMPREF1058_RS18990 0.11 +0.5 35,327 - HMPREF1058_RS18990 0.12 -0.9 35,333 + HMPREF1058_RS18990 0.13 -0.7 35,334 - HMPREF1058_RS18990 0.13 -1.1 35,334 - HMPREF1058_RS18990 0.13 -1.0 35,381 + HMPREF1058_RS18990 0.21 -1.2 35,404 + HMPREF1058_RS18990 0.25 +0.5 35,407 - HMPREF1058_RS18990 0.25 -0.3
Or see this region's nucleotide sequence