Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04650 and HMPREF1058_RS04645 are separated by 77 nucleotides HMPREF1058_RS04645 and HMPREF1058_RS04640 are separated by 422 nucleotides HMPREF1058_RS04640 and HMPREF1058_RS04635 are separated by 78 nucleotides
HMPREF1058_RS04650: HMPREF1058_RS04650 - 9-O-acetylesterase, at 344,344 to 346,260
_RS04650
HMPREF1058_RS04645: HMPREF1058_RS04645 - type II pantothenate kinase, at 346,338 to 347,162
_RS04645
HMPREF1058_RS04640: HMPREF1058_RS04640 - 5S ribosomal RNA, at 347,585 to 347,695
_RS04640
HMPREF1058_RS04635: HMPREF1058_RS04635 - 23S ribosomal RNA, at 347,774 to 350,661
_RS04635
Position (kb) 346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 345.390 kb on - strand, within HMPREF1058_RS04650 at 345.403 kb on + strand, within HMPREF1058_RS04650 at 345.422 kb on + strand, within HMPREF1058_RS04650 at 345.422 kb on + strand, within HMPREF1058_RS04650 at 345.424 kb on + strand, within HMPREF1058_RS04650 at 345.424 kb on + strand, within HMPREF1058_RS04650 at 345.425 kb on - strand, within HMPREF1058_RS04650 at 345.559 kb on - strand, within HMPREF1058_RS04650 at 345.590 kb on + strand, within HMPREF1058_RS04650 at 345.591 kb on - strand, within HMPREF1058_RS04650 at 345.591 kb on - strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.625 kb on - strand, within HMPREF1058_RS04650 at 345.625 kb on - strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.627 kb on - strand, within HMPREF1058_RS04650 at 345.646 kb on - strand, within HMPREF1058_RS04650 at 345.678 kb on - strand, within HMPREF1058_RS04650 at 345.722 kb on + strand, within HMPREF1058_RS04650 at 345.827 kb on + strand, within HMPREF1058_RS04650 at 345.929 kb on + strand, within HMPREF1058_RS04650 at 346.113 kb on - strand at 346.140 kb on - strand at 346.178 kb on - strand at 346.195 kb on - strand at 346.232 kb on + strand at 346.232 kb on + strand at 346.233 kb on - strand at 346.272 kb on + strand at 346.272 kb on + strand at 346.272 kb on + strand at 346.303 kb on + strand at 346.351 kb on + strand at 346.351 kb on + strand at 346.352 kb on - strand at 346.352 kb on - strand at 346.355 kb on + strand at 346.356 kb on - strand at 346.357 kb on + strand at 346.385 kb on - strand at 346.387 kb on + strand at 346.388 kb on - strand at 346.388 kb on - strand at 346.409 kb on - strand at 346.409 kb on - strand at 346.473 kb on + strand, within HMPREF1058_RS04645 at 346.477 kb on + strand, within HMPREF1058_RS04645 at 346.477 kb on + strand, within HMPREF1058_RS04645 at 346.478 kb on - strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.480 kb on - strand, within HMPREF1058_RS04645 at 346.543 kb on - strand, within HMPREF1058_RS04645 at 346.543 kb on - strand, within HMPREF1058_RS04645 at 346.558 kb on + strand, within HMPREF1058_RS04645 at 346.559 kb on - strand, within HMPREF1058_RS04645 at 346.561 kb on - strand, within HMPREF1058_RS04645 at 346.561 kb on - strand, within HMPREF1058_RS04645 at 346.581 kb on - strand, within HMPREF1058_RS04645 at 346.617 kb on + strand, within HMPREF1058_RS04645 at 346.618 kb on - strand, within HMPREF1058_RS04645 at 346.649 kb on - strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.709 kb on - strand, within HMPREF1058_RS04645 at 346.717 kb on + strand, within HMPREF1058_RS04645 at 346.717 kb on + strand, within HMPREF1058_RS04645 at 346.718 kb on - strand, within HMPREF1058_RS04645 at 346.718 kb on - strand, within HMPREF1058_RS04645 at 346.775 kb on + strand, within HMPREF1058_RS04645 at 346.775 kb on + strand, within HMPREF1058_RS04645 at 346.811 kb on - strand, within HMPREF1058_RS04645 at 346.821 kb on - strand, within HMPREF1058_RS04645 at 346.930 kb on + strand, within HMPREF1058_RS04645 at 346.930 kb on + strand, within HMPREF1058_RS04645 at 346.931 kb on - strand, within HMPREF1058_RS04645 at 346.931 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.955 kb on - strand, within HMPREF1058_RS04645 at 346.957 kb on + strand, within HMPREF1058_RS04645 at 346.957 kb on + strand, within HMPREF1058_RS04645 at 346.982 kb on - strand, within HMPREF1058_RS04645 at 347.027 kb on + strand, within HMPREF1058_RS04645 at 347.148 kb on + strand at 347.149 kb on - strand at 347.149 kb on - strand at 347.156 kb on + strand at 347.157 kb on - strand at 347.160 kb on + strand at 347.175 kb on + strand at 347.175 kb on + strand at 347.195 kb on + strand at 347.196 kb on - strand at 347.201 kb on + strand at 347.201 kb on + strand at 347.202 kb on - strand at 347.282 kb on + strand at 347.288 kb on - strand at 347.291 kb on + strand at 347.297 kb on - strand at 347.311 kb on - strand at 347.317 kb on + strand at 347.318 kb on - strand at 347.321 kb on + strand at 347.321 kb on + strand at 347.327 kb on - strand at 347.349 kb on + strand at 347.350 kb on - strand at 347.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 345,390 - HMPREF1058_RS04650 0.55 +0.6 345,403 + HMPREF1058_RS04650 0.55 +0.4 345,422 + HMPREF1058_RS04650 0.56 +0.1 345,422 + HMPREF1058_RS04650 0.56 +0.7 345,424 + HMPREF1058_RS04650 0.56 -0.3 345,424 + HMPREF1058_RS04650 0.56 +0.4 345,425 - HMPREF1058_RS04650 0.56 -0.7 345,559 - HMPREF1058_RS04650 0.63 -0.7 345,590 + HMPREF1058_RS04650 0.65 -0.5 345,591 - HMPREF1058_RS04650 0.65 -0.2 345,591 - HMPREF1058_RS04650 0.65 -0.2 345,624 + HMPREF1058_RS04650 0.67 -1.1 345,624 + HMPREF1058_RS04650 0.67 +0.6 345,624 + HMPREF1058_RS04650 0.67 +1.9 345,625 - HMPREF1058_RS04650 0.67 +1.1 345,625 - HMPREF1058_RS04650 0.67 +0.6 345,626 + HMPREF1058_RS04650 0.67 +1.0 345,626 + HMPREF1058_RS04650 0.67 +1.1 345,626 + HMPREF1058_RS04650 0.67 +1.3 345,627 - HMPREF1058_RS04650 0.67 +0.1 345,646 - HMPREF1058_RS04650 0.68 +0.3 345,678 - HMPREF1058_RS04650 0.70 -0.2 345,722 + HMPREF1058_RS04650 0.72 +0.3 345,827 + HMPREF1058_RS04650 0.77 -1.0 345,929 + HMPREF1058_RS04650 0.83 -0.1 346,113 - -0.6 346,140 - +0.2 346,178 - +0.1 346,195 - -0.7 346,232 + +0.2 346,232 + +0.6 346,233 - -0.3 346,272 + -0.1 346,272 + -0.1 346,272 + -0.1 346,303 + +0.6 346,351 + -0.1 346,351 + -1.1 346,352 - +1.5 346,352 - +0.5 346,355 + +0.8 346,356 - +1.2 346,357 + +0.4 346,385 - -0.5 346,387 + -0.5 346,388 - +0.1 346,388 - +2.3 346,409 - +0.8 346,409 - +1.7 346,473 + HMPREF1058_RS04645 0.16 -0.5 346,477 + HMPREF1058_RS04645 0.17 +0.9 346,477 + HMPREF1058_RS04645 0.17 -1.9 346,478 - HMPREF1058_RS04645 0.17 -0.3 346,479 + HMPREF1058_RS04645 0.17 -0.5 346,479 + HMPREF1058_RS04645 0.17 -2.3 346,479 + HMPREF1058_RS04645 0.17 +0.6 346,480 - HMPREF1058_RS04645 0.17 +0.5 346,543 - HMPREF1058_RS04645 0.25 +0.4 346,543 - HMPREF1058_RS04645 0.25 -0.5 346,558 + HMPREF1058_RS04645 0.27 -0.2 346,559 - HMPREF1058_RS04645 0.27 -0.6 346,561 - HMPREF1058_RS04645 0.27 -0.2 346,561 - HMPREF1058_RS04645 0.27 +0.2 346,581 - HMPREF1058_RS04645 0.29 +2.0 346,617 + HMPREF1058_RS04645 0.34 +0.1 346,618 - HMPREF1058_RS04645 0.34 +1.4 346,649 - HMPREF1058_RS04645 0.38 +0.3 346,708 + HMPREF1058_RS04645 0.45 -0.0 346,708 + HMPREF1058_RS04645 0.45 -0.5 346,708 + HMPREF1058_RS04645 0.45 -1.8 346,709 - HMPREF1058_RS04645 0.45 -0.9 346,717 + HMPREF1058_RS04645 0.46 -1.3 346,717 + HMPREF1058_RS04645 0.46 -0.5 346,718 - HMPREF1058_RS04645 0.46 -0.3 346,718 - HMPREF1058_RS04645 0.46 +1.8 346,775 + HMPREF1058_RS04645 0.53 -0.3 346,775 + HMPREF1058_RS04645 0.53 +1.3 346,811 - HMPREF1058_RS04645 0.57 +0.7 346,821 - HMPREF1058_RS04645 0.59 +0.6 346,930 + HMPREF1058_RS04645 0.72 +0.1 346,930 + HMPREF1058_RS04645 0.72 -1.2 346,931 - HMPREF1058_RS04645 0.72 -0.5 346,931 - HMPREF1058_RS04645 0.72 -1.1 346,950 - HMPREF1058_RS04645 0.74 -0.4 346,950 - HMPREF1058_RS04645 0.74 -0.6 346,950 - HMPREF1058_RS04645 0.74 -0.2 346,955 - HMPREF1058_RS04645 0.75 -0.7 346,957 + HMPREF1058_RS04645 0.75 -1.3 346,957 + HMPREF1058_RS04645 0.75 +0.3 346,982 - HMPREF1058_RS04645 0.78 +0.7 347,027 + HMPREF1058_RS04645 0.84 +1.0 347,148 + +0.6 347,149 - -0.4 347,149 - +2.0 347,156 + +1.4 347,157 - +0.6 347,160 + +0.8 347,175 + -0.4 347,175 + +0.6 347,195 + +1.0 347,196 - +1.2 347,201 + +0.2 347,201 + -0.9 347,202 - +0.3 347,282 + +0.2 347,288 - +0.4 347,291 + +0.2 347,297 - -0.1 347,311 - -2.8 347,317 + +0.9 347,318 - -0.2 347,321 + +1.0 347,321 + -1.2 347,327 - -0.7 347,349 + -1.3 347,350 - -0.8 347,357 - +0.9
Or see this region's nucleotide sequence