Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03855 and HMPREF1058_RS03850 are separated by 23 nucleotides HMPREF1058_RS03850 and HMPREF1058_RS03845 are separated by 12 nucleotides
HMPREF1058_RS03855: HMPREF1058_RS03855 - ABC transporter ATP-binding protein, at 170,888 to 172,342
_RS03855
HMPREF1058_RS03850: HMPREF1058_RS03850 - ABC transporter permease, at 172,366 to 173,472
_RS03850
HMPREF1058_RS03845: HMPREF1058_RS03845 - ABC transporter permease, at 173,485 to 174,591
_RS03845
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.622 kb on - strand, within HMPREF1058_RS03855 at 171.714 kb on + strand, within HMPREF1058_RS03855 at 171.715 kb on - strand, within HMPREF1058_RS03855 at 171.790 kb on + strand, within HMPREF1058_RS03855 at 171.791 kb on - strand, within HMPREF1058_RS03855 at 171.791 kb on - strand, within HMPREF1058_RS03855 at 171.850 kb on + strand, within HMPREF1058_RS03855 at 171.850 kb on + strand, within HMPREF1058_RS03855 at 171.851 kb on - strand, within HMPREF1058_RS03855 at 172.188 kb on - strand, within HMPREF1058_RS03855 at 172.231 kb on - strand at 172.294 kb on + strand at 172.443 kb on - strand at 172.443 kb on - strand at 172.443 kb on - strand at 172.457 kb on + strand at 172.506 kb on - strand, within HMPREF1058_RS03850 at 172.598 kb on + strand, within HMPREF1058_RS03850 at 172.599 kb on - strand, within HMPREF1058_RS03850 at 172.599 kb on - strand, within HMPREF1058_RS03850 at 172.603 kb on + strand, within HMPREF1058_RS03850 at 172.603 kb on + strand, within HMPREF1058_RS03850 at 172.604 kb on - strand, within HMPREF1058_RS03850 at 172.620 kb on - strand, within HMPREF1058_RS03850 at 172.765 kb on + strand, within HMPREF1058_RS03850 at 172.765 kb on + strand, within HMPREF1058_RS03850 at 172.766 kb on - strand, within HMPREF1058_RS03850 at 172.780 kb on - strand, within HMPREF1058_RS03850 at 173.021 kb on + strand, within HMPREF1058_RS03850 at 173.034 kb on - strand, within HMPREF1058_RS03850 at 173.038 kb on + strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.094 kb on - strand, within HMPREF1058_RS03850 at 173.096 kb on + strand, within HMPREF1058_RS03850 at 173.335 kb on + strand, within HMPREF1058_RS03850 at 173.406 kb on - strand at 173.406 kb on - strand at 173.409 kb on + strand at 173.409 kb on + strand at 173.494 kb on + strand at 173.495 kb on - strand at 173.495 kb on - strand at 173.498 kb on + strand at 173.571 kb on + strand at 173.705 kb on + strand, within HMPREF1058_RS03845 at 173.705 kb on + strand, within HMPREF1058_RS03845 at 173.706 kb on - strand, within HMPREF1058_RS03845 at 173.723 kb on - strand, within HMPREF1058_RS03845 at 173.723 kb on - strand, within HMPREF1058_RS03845 at 173.878 kb on + strand, within HMPREF1058_RS03845 at 173.889 kb on + strand, within HMPREF1058_RS03845 at 173.890 kb on - strand, within HMPREF1058_RS03845 at 173.957 kb on + strand, within HMPREF1058_RS03845 at 174.000 kb on + strand, within HMPREF1058_RS03845 at 174.001 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.010 kb on - strand, within HMPREF1058_RS03845 at 174.316 kb on + strand, within HMPREF1058_RS03845 at 174.408 kb on + strand, within HMPREF1058_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 171,622 - HMPREF1058_RS03855 0.50 -1.3 171,714 + HMPREF1058_RS03855 0.57 -1.1 171,715 - HMPREF1058_RS03855 0.57 +0.3 171,790 + HMPREF1058_RS03855 0.62 +1.8 171,791 - HMPREF1058_RS03855 0.62 -1.4 171,791 - HMPREF1058_RS03855 0.62 -0.3 171,850 + HMPREF1058_RS03855 0.66 +0.1 171,850 + HMPREF1058_RS03855 0.66 +1.2 171,851 - HMPREF1058_RS03855 0.66 -2.6 172,188 - HMPREF1058_RS03855 0.89 -0.9 172,231 - -0.5 172,294 + +0.2 172,443 - -0.3 172,443 - +1.4 172,443 - -0.7 172,457 + -0.0 172,506 - HMPREF1058_RS03850 0.13 -0.5 172,598 + HMPREF1058_RS03850 0.21 +0.4 172,599 - HMPREF1058_RS03850 0.21 -1.6 172,599 - HMPREF1058_RS03850 0.21 +0.3 172,603 + HMPREF1058_RS03850 0.21 +0.1 172,603 + HMPREF1058_RS03850 0.21 -0.8 172,604 - HMPREF1058_RS03850 0.21 +0.1 172,620 - HMPREF1058_RS03850 0.23 -0.8 172,765 + HMPREF1058_RS03850 0.36 -1.1 172,765 + HMPREF1058_RS03850 0.36 -1.7 172,766 - HMPREF1058_RS03850 0.36 -0.1 172,780 - HMPREF1058_RS03850 0.37 +0.1 173,021 + HMPREF1058_RS03850 0.59 -0.4 173,034 - HMPREF1058_RS03850 0.60 -1.2 173,038 + HMPREF1058_RS03850 0.61 +1.1 173,039 - HMPREF1058_RS03850 0.61 -0.8 173,039 - HMPREF1058_RS03850 0.61 -1.7 173,039 - HMPREF1058_RS03850 0.61 -0.9 173,039 - HMPREF1058_RS03850 0.61 -1.4 173,039 - HMPREF1058_RS03850 0.61 +1.4 173,094 - HMPREF1058_RS03850 0.66 -0.9 173,096 + HMPREF1058_RS03850 0.66 -1.4 173,335 + HMPREF1058_RS03850 0.88 -1.5 173,406 - -0.0 173,406 - +0.8 173,409 + -0.5 173,409 + +2.0 173,494 + -0.3 173,495 - +1.7 173,495 - -1.4 173,498 + -0.9 173,571 + +0.6 173,705 + HMPREF1058_RS03845 0.20 +0.0 173,705 + HMPREF1058_RS03845 0.20 +0.9 173,706 - HMPREF1058_RS03845 0.20 +1.0 173,723 - HMPREF1058_RS03845 0.21 -0.2 173,723 - HMPREF1058_RS03845 0.21 +0.9 173,878 + HMPREF1058_RS03845 0.36 +0.8 173,889 + HMPREF1058_RS03845 0.36 -2.1 173,890 - HMPREF1058_RS03845 0.37 -3.0 173,957 + HMPREF1058_RS03845 0.43 +0.6 174,000 + HMPREF1058_RS03845 0.47 -0.8 174,001 - HMPREF1058_RS03845 0.47 +0.0 174,006 - HMPREF1058_RS03845 0.47 +0.5 174,006 - HMPREF1058_RS03845 0.47 +1.3 174,006 - HMPREF1058_RS03845 0.47 -1.9 174,010 - HMPREF1058_RS03845 0.47 +0.1 174,316 + HMPREF1058_RS03845 0.75 -0.4 174,408 + HMPREF1058_RS03845 0.83 +2.1
Or see this region's nucleotide sequence