Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017720

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
3,867,530	+				-1.8
3,867,535	+				-0.0
3,867,578	+		TX73_017705	0.21	+0.2
3,867,578	+		TX73_017705	0.21	-0.5
3,867,581	-		TX73_017705	0.23	+1.1
3,867,582	+		TX73_017705	0.23	+0.5
3,867,586	+		TX73_017705	0.25	+0.4
3,867,586	-		TX73_017705	0.25	-0.8
3,867,586	-		TX73_017705	0.25	-0.7
3,867,586	-		TX73_017705	0.25	-0.7
3,867,611	+		TX73_017705	0.38	+0.0
3,867,611	+		TX73_017705	0.38	-1.2
3,867,619	-		TX73_017705	0.43	-0.5
3,867,626	+		TX73_017705	0.46	-1.0
3,867,626	+		TX73_017705	0.46	+1.2
3,867,630	-		TX73_017705	0.48	+0.0
3,867,662	-		TX73_017705	0.65	+0.1
3,867,671	+		TX73_017705	0.70	+0.6
3,867,673	+		TX73_017705	0.71	+0.3
3,867,696	-		TX73_017705	0.83	-1.1
3,867,707	+		TX73_017705	0.89	-1.0
3,867,709	-				-0.5
3,867,722	+				+0.5
3,867,722	+				-0.8
3,867,722	+				+0.3
3,867,729	-				-0.1
3,867,730	-				+0.1
3,867,757	+		TX73_017710	0.11	+2.7
3,867,766	-		TX73_017710	0.17	+1.5
3,867,780	-		TX73_017710	0.25	+0.4
3,867,782	-		TX73_017710	0.26	+0.2
3,867,791	-		TX73_017710	0.32	+0.1
3,867,824	-		TX73_017710	0.51	-1.3
3,867,826	+		TX73_017710	0.52	-0.6
3,867,834	-		TX73_017710	0.57	-1.2
3,867,847	-		TX73_017710	0.65	-0.1
3,867,855	+		TX73_017710	0.70	+0.5
3,867,890	+				-0.4
3,867,917	+				-0.3
3,867,938	-				-1.5
3,867,941	-				-0.5
3,867,956	+				-2.3
3,867,962	+				+0.1
3,867,962	+				+1.8
3,867,970	-				+0.6
3,867,993	-		TX73_017715	0.11	+2.2
3,868,006	-		TX73_017715	0.13	+0.9
3,868,009	+		TX73_017715	0.14	-1.9
3,868,010	+		TX73_017715	0.14	+1.2
3,868,010	+		TX73_017715	0.14	-0.5
3,868,010	+		TX73_017715	0.14	-2.4
3,868,010	+		TX73_017715	0.14	-1.9
3,868,010	+		TX73_017715	0.14	+0.8
3,868,018	-		TX73_017715	0.15	+1.5
3,868,020	+		TX73_017715	0.16	-0.1
3,868,020	+		TX73_017715	0.16	-1.8
3,868,020	+		TX73_017715	0.16	-0.4
3,868,020	+		TX73_017715	0.16	-0.9
3,868,025	+		TX73_017715	0.17	-0.8
3,868,028	-		TX73_017715	0.17	+0.8
3,868,028	-		TX73_017715	0.17	+2.6
3,868,028	-		TX73_017715	0.17	+0.0
3,868,028	-		TX73_017715	0.17	-0.6
3,868,034	-		TX73_017715	0.18	+0.3
3,868,043	+		TX73_017715	0.20	+0.8
3,868,043	+		TX73_017715	0.20	-1.7
3,868,043	+		TX73_017715	0.20	+1.3
3,868,043	+		TX73_017715	0.20	-0.3
3,868,043	+		TX73_017715	0.20	-0.7
3,868,051	-		TX73_017715	0.21	+0.5
3,868,051	-		TX73_017715	0.21	+1.2
3,868,055	+		TX73_017715	0.22	+1.7
3,868,066	-		TX73_017715	0.24	+0.6
3,868,070	-		TX73_017715	0.25	+0.9
3,868,070	-		TX73_017715	0.25	+0.5
3,868,071	-		TX73_017715	0.25	+1.2
3,868,099	+		TX73_017715	0.31	+1.9
3,868,099	+		TX73_017715	0.31	-0.3
3,868,101	+		TX73_017715	0.31	-0.4
3,868,101	+		TX73_017715	0.31	-1.0
3,868,107	+		TX73_017715	0.32	+0.8
3,868,107	+		TX73_017715	0.32	-1.8
3,868,109	-		TX73_017715	0.32	-0.8
3,868,120	-		TX73_017715	0.34	-1.5
3,868,134	-		TX73_017715	0.37	+0.2
3,868,145	-		TX73_017715	0.39	-0.7
3,868,166	+		TX73_017715	0.43	-0.0
3,868,171	+		TX73_017715	0.44	-0.3
3,868,186	+		TX73_017715	0.47	-1.0
3,868,193	+		TX73_017715	0.48	+0.2
3,868,193	+		TX73_017715	0.48	-0.4
3,868,193	+		TX73_017715	0.48	+0.5
3,868,198	+		TX73_017715	0.49	-0.6
3,868,206	+		TX73_017715	0.51	-0.8
3,868,214	-		TX73_017715	0.52	+1.3
3,868,224	-		TX73_017715	0.54	+1.9
3,868,226	+		TX73_017715	0.54	-0.5
3,868,234	-		TX73_017715	0.56	-0.6
3,868,234	-		TX73_017715	0.56	-0.0
3,868,234	-		TX73_017715	0.56	+1.0
3,868,241	+		TX73_017715	0.57	+2.1
3,868,244	-		TX73_017715	0.58	+0.6
3,868,263	-		TX73_017715	0.61	+1.3
3,868,319	-		TX73_017715	0.72	+0.4
3,868,345	+		TX73_017715	0.77	-0.2
3,868,354	-		TX73_017715	0.79	-0.9
3,868,385	+		TX73_017715	0.84	-0.0
3,868,476	+				-0.4
3,868,480	-				+0.3
3,868,482	-				-1.1
3,868,483	-				-0.3
3,868,484	-				-0.5
3,868,490	+				-1.6
3,868,490	+				-1.8
3,868,490	+				+0.7
3,868,490	+				-0.2
3,868,490	+				-0.5
3,868,495	+				+0.3
3,868,498	-				+2.0
3,868,503	-				-0.9
3,868,536	+				-0.8
3,868,578	-		TX73_017720	0.15	-0.0
3,868,585	+		TX73_017720	0.17	-0.8
3,868,585	+		TX73_017720	0.17	-2.4
3,868,585	+		TX73_017720	0.17	-1.2
3,868,585	+		TX73_017720	0.17	-0.9
3,868,585	+		TX73_017720	0.17	-0.2
3,868,585	+		TX73_017720	0.17	-0.1
3,868,593	-		TX73_017720	0.20	-0.1
3,868,593	-		TX73_017720	0.20	+0.9
3,868,593	-		TX73_017720	0.20	-1.8
3,868,593	-		TX73_017720	0.20	-1.5
3,868,593	-		TX73_017720	0.20	-0.7
3,868,637	+		TX73_017720	0.33	-0.7
3,868,637	+		TX73_017720	0.33	-0.1
3,868,637	+		TX73_017720	0.33	+0.9
3,868,637	+		TX73_017720	0.33	-0.5
3,868,645	-		TX73_017720	0.35	-0.8
3,868,645	-		TX73_017720	0.35	+1.5
3,868,645	-		TX73_017720	0.35	-1.3
3,868,650	-		TX73_017720	0.37	-1.3
3,868,664	-		TX73_017720	0.41	-0.6
3,868,671	-		TX73_017720	0.43	+0.7
3,868,683	-		TX73_017720	0.47	-0.3
3,868,683	-		TX73_017720	0.47	+0.2
3,868,703	-		TX73_017720	0.53	-1.3
3,868,712	+		TX73_017720	0.56	+1.6
3,868,720	-		TX73_017720	0.58	-0.1
3,868,720	-		TX73_017720	0.58	+1.3
3,868,740	-		TX73_017720	0.64	-0.6
3,868,745	-		TX73_017720	0.65	+0.5
3,868,756	-		TX73_017720	0.69	+1.7
3,868,767	-		TX73_017720	0.72	-0.7
3,868,772	-		TX73_017720	0.74	+0.1
3,868,781	+		TX73_017720	0.76	-0.5
3,868,791	+		TX73_017720	0.79	-0.4
3,868,791	+		TX73_017720	0.79	-1.0
3,868,792	+		TX73_017720	0.80	-0.6
3,868,798	+		TX73_017720	0.81	-2.1
3,868,799	-		TX73_017720	0.82	+0.1
3,868,799	-		TX73_017720	0.82	+1.2
3,868,799	-		TX73_017720	0.82	-0.4
3,868,799	-		TX73_017720	0.82	-0.8
3,868,808	+		TX73_017720	0.84	+0.1
3,868,830	+				+1.7
3,868,885	+				+0.3
3,868,885	+				-0.5
3,868,885	+				-0.9
3,868,885	+				+0.3
3,868,893	-				+0.6
3,868,893	-				-0.4
3,868,893	-				-0.2
3,868,893	-				+1.1
3,868,979	+				-1.7
3,868,979	+				+1.2
3,869,004	+				-0.8
3,869,011	+				-0.1
3,869,014	-				+1.1
3,869,023	+				+0.1
3,869,035	+				-0.7
3,869,068	+				-0.9
3,869,068	+				+0.2
3,869,068	+				+1.0
3,869,076	-				-0.0
3,869,076	-				-0.1
3,869,127	-		TX73_017725	0.11	+0.0
3,869,161	+		TX73_017725	0.16	+1.3
3,869,178	-		TX73_017725	0.18	-1.2
3,869,178	-		TX73_017725	0.18	-0.8
3,869,183	-		TX73_017725	0.19	+0.9
3,869,189	+		TX73_017725	0.20	-1.6
3,869,199	+		TX73_017725	0.21	-0.3
3,869,203	-		TX73_017725	0.22	+0.3
3,869,209	-		TX73_017725	0.22	-0.6
3,869,230	-		TX73_017725	0.25	+0.4
3,869,245	+		TX73_017725	0.28	+0.6
3,869,255	-		TX73_017725	0.29	-0.5
3,869,262	-		TX73_017725	0.30	+1.5
3,869,262	-		TX73_017725	0.30	+0.5
3,869,267	-		TX73_017725	0.31	-0.3
3,869,278	+		TX73_017725	0.32	-0.1
3,869,279	+		TX73_017725	0.32	+1.2
3,869,307	-		TX73_017725	0.36	-0.4
3,869,316	-		TX73_017725	0.38	-1.0
3,869,317	-		TX73_017725	0.38	-0.6
3,869,336	-		TX73_017725	0.40	-1.0
3,869,374	-		TX73_017725	0.46	-1.1
3,869,396	-		TX73_017725	0.49	+0.1
3,869,428	+		TX73_017725	0.53	+1.8
3,869,428	+		TX73_017725	0.53	-1.6
3,869,428	+		TX73_017725	0.53	+0.2
3,869,428	+		TX73_017725	0.53	-0.1
3,869,428	+		TX73_017725	0.53	-0.7
3,869,431	-		TX73_017725	0.54	+1.3
3,869,442	+		TX73_017725	0.55	+1.8
3,869,442	+		TX73_017725	0.55	+0.2
3,869,450	-		TX73_017725	0.56	+0.2
3,869,484	+		TX73_017725	0.61	+3.4
3,869,513	+		TX73_017725	0.65	+0.7
3,869,513	+		TX73_017725	0.65	+0.8
3,869,513	+		TX73_017725	0.65	+0.0
3,869,513	+		TX73_017725	0.65	+0.7
3,869,513	+		TX73_017725	0.65	+0.0
3,869,513	+		TX73_017725	0.65	+0.0
3,869,521	-		TX73_017725	0.67	+0.7
3,869,521	-		TX73_017725	0.67	-1.7
3,869,521	-		TX73_017725	0.67	+0.2
3,869,521	-		TX73_017725	0.67	+0.6
3,869,521	-		TX73_017725	0.67	-0.5
3,869,521	-		TX73_017725	0.67	+0.6
3,869,521	-		TX73_017725	0.67	-0.5
3,869,563	-		TX73_017725	0.72	-1.1
3,869,565	+		TX73_017725	0.73	+0.2
3,869,573	-		TX73_017725	0.74	-1.7
3,869,586	+		TX73_017725	0.76	+0.4
3,869,587	-		TX73_017725	0.76	+1.7
3,869,606	-		TX73_017725	0.79	-0.3
3,869,606	-		TX73_017725	0.79	+0.3
3,869,606	-		TX73_017725	0.79	+1.3
3,869,624	+		TX73_017725	0.81	+0.7
3,869,624	+		TX73_017725	0.81	+1.6
3,869,665	+		TX73_017725	0.87	+1.1
3,869,687	+				-0.8
3,869,687	+				+8.1
3,869,751	+				-0.2
3,869,754	-				+0.9
3,869,756	+				+0.4
3,869,761	+				-0.4
3,869,761	-				-0.5
3,869,771	+				+0.8
3,869,771	+				+0.1
3,869,781	+				+0.2
3,869,781	+				+0.0
3,869,795	-				+0.2
3,869,831	+		TX73_017730	0.26	+1.9