Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016955

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
3,695,008	+		TX73_016945	0.83	+0.6
3,695,013	+		TX73_016945	0.84	-0.2
3,695,013	+		TX73_016945	0.84	-1.9
3,695,016	-		TX73_016945	0.84	+1.2
3,695,016	-		TX73_016945	0.84	+2.1
3,695,050	+		TX73_016945	0.88	+0.7
3,695,054	+		TX73_016945	0.88	+1.4
3,695,054	+		TX73_016945	0.88	+0.8
3,695,100	-				+0.8
3,695,102	+				-1.1
3,695,105	-				+1.4
3,695,166	+				-0.3
3,695,185	-				-1.3
3,695,227	-				+1.3
3,695,285	+		TX73_016950	0.18	+0.3
3,695,293	-		TX73_016950	0.19	+0.5
3,695,347	-		TX73_016950	0.27	-1.3
3,695,378	-		TX73_016950	0.31	-0.3
3,695,388	+		TX73_016950	0.33	-0.1
3,695,473	+		TX73_016950	0.45	+1.9
3,695,475	-		TX73_016950	0.46	-1.5
3,695,483	-		TX73_016950	0.47	+0.8
3,695,496	+		TX73_016950	0.49	+0.1
3,695,505	-		TX73_016950	0.50	+0.2
3,695,505	-		TX73_016950	0.50	-0.1
3,695,599	-		TX73_016950	0.64	-0.7
3,695,625	+		TX73_016950	0.68	-0.0
3,695,761	+		TX73_016950	0.87	-2.0
3,695,771	-		TX73_016950	0.89	+2.1
3,695,823	-				+0.3
3,695,827	-				-1.0
3,696,018	-				+0.6
3,696,032	+				+0.7
3,696,121	+				-0.0
3,696,126	+				+0.3
3,696,136	+				+0.1
3,696,136	+				-0.3
3,696,312	+		TX73_016955	0.10	+0.7
3,696,366	+		TX73_016955	0.12	-0.5
3,696,366	+		TX73_016955	0.12	-0.6
3,696,374	-		TX73_016955	0.12	+2.9
3,696,374	-		TX73_016955	0.12	-0.5
3,696,391	+		TX73_016955	0.13	+2.9
3,696,394	-		TX73_016955	0.13	-1.9
3,696,451	+		TX73_016955	0.14	-1.5
3,696,478	+		TX73_016955	0.15	-1.6
3,696,489	+		TX73_016955	0.15	+0.7
3,696,636	+		TX73_016955	0.20	-0.4
3,696,662	+		TX73_016955	0.20	+0.2
3,696,662	+		TX73_016955	0.20	-1.5
3,696,662	+		TX73_016955	0.20	+0.6
3,696,662	+		TX73_016955	0.20	-0.2
3,696,662	+		TX73_016955	0.20	-0.8
3,696,670	-		TX73_016955	0.21	-0.4
3,696,670	-		TX73_016955	0.21	-1.4
3,696,670	-		TX73_016955	0.21	-0.7
3,696,670	-		TX73_016955	0.21	+1.3
3,696,680	-		TX73_016955	0.21	+1.5
3,696,754	-		TX73_016955	0.23	+1.5
3,696,840	+		TX73_016955	0.25	+0.6
3,696,840	+		TX73_016955	0.25	+0.9
3,696,848	-		TX73_016955	0.26	+0.0
3,696,969	+		TX73_016955	0.29	+2.7
3,696,979	-		TX73_016955	0.29	-0.7
3,696,986	+		TX73_016955	0.30	-0.7
3,697,154	+		TX73_016955	0.34	+0.7
3,697,216	+		TX73_016955	0.36	+0.8
3,697,453	-		TX73_016955	0.43	+0.6
3,697,453	-		TX73_016955	0.43	+1.0
3,697,470	-		TX73_016955	0.43	-1.1
3,697,504	-		TX73_016955	0.44	+0.3
3,697,527	+		TX73_016955	0.45	+3.1
3,697,542	+		TX73_016955	0.45	+0.2
3,697,596	+		TX73_016955	0.47	-0.7
3,697,644	+		TX73_016955	0.48	+0.4
3,697,653	-		TX73_016955	0.49	-0.5
3,697,684	+		TX73_016955	0.49	+0.3
3,697,814	+		TX73_016955	0.53	+1.0
3,697,882	+		TX73_016955	0.55	-1.1
3,697,940	-		TX73_016955	0.57	+0.3
3,697,940	-		TX73_016955	0.57	-0.5
3,697,965	+		TX73_016955	0.57	+1.7
3,698,034	-		TX73_016955	0.59	-0.4
3,698,073	+		TX73_016955	0.61	+0.1
3,698,084	+		TX73_016955	0.61	-0.8
3,698,094	+		TX73_016955	0.61	-1.0
3,698,102	-		TX73_016955	0.61	+2.0
3,698,117	+		TX73_016955	0.62	-1.0
3,698,149	+		TX73_016955	0.63	+2.4
3,698,183	+		TX73_016955	0.64	+2.7
3,698,186	+		TX73_016955	0.64	+0.6
3,698,241	+		TX73_016955	0.65	+1.3
3,698,490	+		TX73_016955	0.72	+0.5
3,698,490	+		TX73_016955	0.72	-0.1
3,698,507	+		TX73_016955	0.73	-2.2
3,698,524	-		TX73_016955	0.73	-0.0
3,698,536	+		TX73_016955	0.74	-0.4
3,698,544	-		TX73_016955	0.74	+0.9
3,698,562	+		TX73_016955	0.74	-0.5
3,698,562	+		TX73_016955	0.74	+0.5
3,698,562	+		TX73_016955	0.74	+0.1
3,698,570	-		TX73_016955	0.75	-0.0
3,698,570	-		TX73_016955	0.75	+0.2
3,698,575	-		TX73_016955	0.75	+0.1
3,698,583	+		TX73_016955	0.75	+0.4
3,698,584	+		TX73_016955	0.75	+0.6
3,698,591	-		TX73_016955	0.75	+0.9
3,698,591	-		TX73_016955	0.75	+0.1
3,698,600	+		TX73_016955	0.76	-0.6
3,698,600	+		TX73_016955	0.76	-0.7
3,698,600	+		TX73_016955	0.76	+1.3
3,698,607	-		TX73_016955	0.76	+0.4
3,698,608	-		TX73_016955	0.76	-0.6
3,698,608	-		TX73_016955	0.76	-0.2
3,698,629	+		TX73_016955	0.76	+1.1
3,698,654	+		TX73_016955	0.77	-0.8
3,698,733	+		TX73_016955	0.79	-0.4
3,698,733	+		TX73_016955	0.79	-1.0
3,698,733	+		TX73_016955	0.79	-2.1
3,698,741	-		TX73_016955	0.80	+0.3
3,698,753	-		TX73_016955	0.80	-1.2
3,698,760	+		TX73_016955	0.80	+0.1
3,698,796	-		TX73_016955	0.81	-0.5
3,698,812	-		TX73_016955	0.82	+0.3
3,698,829	-		TX73_016955	0.82	+1.3
3,698,866	+		TX73_016955	0.83	-0.6
3,698,891	-		TX73_016955	0.84	-0.2
3,698,938	-		TX73_016955	0.85	+0.6
3,698,948	+		TX73_016955	0.85	+1.0
3,698,956	-		TX73_016955	0.86	-0.3
3,698,998	-		TX73_016955	0.87	-2.0
3,699,014	-		TX73_016955	0.87	+1.9
3,699,014	-		TX73_016955	0.87	-0.8
3,699,047	+		TX73_016955	0.88	-0.9
3,699,064	+		TX73_016955	0.89	+0.1
3,699,116	-				+0.9
3,699,130	+				-0.2
3,699,138	-				-0.7
3,699,140	+				+0.3
3,699,177	+				-0.7
3,699,185	-				-0.5
3,699,186	+				+0.2
3,699,196	+				-0.3
3,699,196	+				+0.8
3,699,204	-				-0.1
3,699,204	-				-0.4
3,699,204	-				-0.7
3,699,214	-				-0.1
3,699,218	+				-0.4
3,699,266	+				+0.1
3,699,288	-				-0.4
3,699,291	+				+0.7
3,699,296	+				+0.1
3,699,336	+				+0.0
3,699,351	+				+0.9
3,699,357	-				-0.5
3,699,558	+				-0.3
3,699,586	+				+0.8
3,699,682	-				-1.2
3,699,714	+		TX73_016960	0.13	+0.8
3,699,714	+		TX73_016960	0.13	-1.1
3,699,722	-		TX73_016960	0.14	-0.2
3,699,732	-		TX73_016960	0.15	+0.8
3,699,803	-		TX73_016960	0.22	-0.5
3,699,869	-		TX73_016960	0.29	+0.0
3,699,891	-		TX73_016960	0.31	+0.6
3,699,894	-		TX73_016960	0.32	-0.9
3,699,905	+		TX73_016960	0.33	+0.6
3,699,907	+		TX73_016960	0.33	-1.2
3,699,959	+		TX73_016960	0.39	+1.1
3,699,964	+		TX73_016960	0.39	+0.2
3,699,964	+		TX73_016960	0.39	-0.3
3,699,974	-		TX73_016960	0.40	-0.2
3,700,023	+		TX73_016960	0.45	+0.4
3,700,025	+		TX73_016960	0.45	-0.6
3,700,025	+		TX73_016960	0.45	+1.0
3,700,033	-		TX73_016960	0.46	-0.1
3,700,033	-		TX73_016960	0.46	-0.6
3,700,088	-		TX73_016960	0.52	+1.2
3,700,167	-		TX73_016960	0.60	-0.6
3,700,216	+		TX73_016960	0.65	+0.0
3,700,235	-		TX73_016960	0.67	-0.1
3,700,295	+		TX73_016960	0.73	+1.3
3,700,302	-		TX73_016960	0.74	-0.3
3,700,339	+		TX73_016960	0.78	-1.3
3,700,339	+		TX73_016960	0.78	-1.4
3,700,339	+		TX73_016960	0.78	+0.9
3,700,339	+		TX73_016960	0.78	+0.5
3,700,347	-		TX73_016960	0.79	-1.2
3,700,352	-		TX73_016960	0.79	-0.6
3,700,394	+		TX73_016960	0.84	+0.6
3,700,394	-		TX73_016960	0.84	-1.0
3,700,404	-		TX73_016960	0.85	+0.0
3,700,411	+		TX73_016960	0.85	-1.0
3,700,414	-		TX73_016960	0.86	+0.2
3,700,424	+		TX73_016960	0.87	+0.7
3,700,429	+		TX73_016960	0.87	-1.0
3,700,429	+		TX73_016960	0.87	+0.5
3,700,437	-		TX73_016960	0.88	+1.5
3,700,437	-		TX73_016960	0.88	+2.5
3,700,437	-		TX73_016960	0.88	-1.6
3,700,452	-		TX73_016960	0.90	-0.3