Experiment: NFM with pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001905 and TX73_001910 are separated by 72 nucleotides TX73_001910 and TX73_001915 are separated by 238 nucleotides TX73_001915 and TX73_001920 are separated by 92 nucleotides TX73_001920 and TX73_001925 are separated by 312 nucleotides
TX73_001905: TX73_001905 - RluA family pseudouridine synthase, at 398,329 to 399,303
_001905
TX73_001910: TX73_001910 - hypothetical protein, at 399,376 to 399,711
_001910
TX73_001915: TX73_001915 - tRNA-Glu, at 399,950 to 400,024
_001915
TX73_001920: TX73_001920 - ATP-binding protein, at 400,117 to 402,720
_001920
TX73_001925: TX73_001925 - EAL domain-containing protein, at 403,033 to 405,459
_001925
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 399.143 kb on + strand, within TX73_001905 at 399.149 kb on - strand, within TX73_001905 at 399.159 kb on - strand, within TX73_001905 at 399.159 kb on - strand, within TX73_001905 at 399.192 kb on + strand, within TX73_001905 at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.242 kb on + strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.262 kb on - strand at 399.263 kb on + strand at 399.280 kb on + strand at 399.292 kb on + strand at 399.292 kb on + strand at 399.333 kb on + strand at 399.333 kb on + strand at 399.333 kb on + strand at 399.341 kb on - strand at 399.343 kb on + strand at 399.351 kb on - strand at 399.378 kb on + strand at 399.383 kb on + strand at 399.387 kb on - strand at 399.395 kb on - strand at 399.397 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.407 kb on - strand at 399.408 kb on + strand at 399.423 kb on + strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.457 kb on + strand, within TX73_001910 at 399.457 kb on + strand, within TX73_001910 at 399.460 kb on - strand, within TX73_001910 at 399.462 kb on + strand, within TX73_001910 at 399.462 kb on + strand, within TX73_001910 at 399.465 kb on - strand, within TX73_001910 at 399.478 kb on - strand, within TX73_001910 at 399.495 kb on - strand, within TX73_001910 at 399.495 kb on - strand, within TX73_001910 at 399.497 kb on - strand, within TX73_001910 at 399.503 kb on + strand, within TX73_001910 at 399.511 kb on - strand, within TX73_001910 at 399.511 kb on - strand, within TX73_001910 at 399.544 kb on + strand, within TX73_001910 at 399.545 kb on - strand, within TX73_001910 at 399.547 kb on + strand, within TX73_001910 at 399.548 kb on + strand, within TX73_001910 at 399.548 kb on + strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.554 kb on + strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.562 kb on - strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.572 kb on - strand, within TX73_001910 at 399.590 kb on - strand, within TX73_001910 at 399.591 kb on - strand, within TX73_001910 at 399.606 kb on + strand, within TX73_001910 at 399.608 kb on + strand, within TX73_001910 at 399.610 kb on + strand, within TX73_001910 at 399.638 kb on + strand, within TX73_001910 at 399.656 kb on - strand, within TX73_001910 at 399.672 kb on + strand, within TX73_001910 at 399.684 kb on - strand at 399.685 kb on + strand at 399.685 kb on + strand at 399.685 kb on + strand at 399.687 kb on + strand at 399.693 kb on - strand at 399.713 kb on - strand at 399.728 kb on + strand at 399.750 kb on + strand at 399.757 kb on + strand at 399.763 kb on + strand at 399.765 kb on - strand at 399.776 kb on + strand at 399.792 kb on - strand at 399.805 kb on + strand at 399.805 kb on + strand at 399.816 kb on + strand at 399.817 kb on - strand at 399.826 kb on + strand at 399.826 kb on + strand at 399.827 kb on - strand at 399.834 kb on - strand at 399.863 kb on + strand at 399.868 kb on + strand at 399.871 kb on - strand at 399.906 kb on + strand at 399.944 kb on - strand at 399.944 kb on - strand at 399.950 kb on - strand at 399.953 kb on + strand at 399.961 kb on - strand, within TX73_001915 at 399.965 kb on - strand, within TX73_001915 at 399.978 kb on + strand, within TX73_001915 at 399.980 kb on + strand, within TX73_001915 at 399.982 kb on + strand, within TX73_001915 at 399.982 kb on + strand, within TX73_001915 at 399.988 kb on - strand, within TX73_001915 at 399.988 kb on - strand, within TX73_001915 at 399.990 kb on - strand, within TX73_001915 at 399.993 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.046 kb on + strand at 400.084 kb on + strand at 400.131 kb on + strand at 400.139 kb on - strand at 400.139 kb on - strand at 400.141 kb on - strand at 400.149 kb on + strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.165 kb on + strand at 400.189 kb on - strand at 400.206 kb on - strand at 400.245 kb on + strand at 400.245 kb on - strand at 400.258 kb on + strand at 400.266 kb on - strand at 400.277 kb on + strand at 400.281 kb on - strand at 400.319 kb on + strand at 400.346 kb on - strand at 400.390 kb on + strand, within TX73_001920 at 400.402 kb on + strand, within TX73_001920 at 400.402 kb on + strand, within TX73_001920 at 400.497 kb on + strand, within TX73_001920 at 400.498 kb on - strand, within TX73_001920 at 400.523 kb on + strand, within TX73_001920 at 400.531 kb on - strand, within TX73_001920 at 400.536 kb on + strand, within TX73_001920 at 400.648 kb on - strand, within TX73_001920 at 400.682 kb on - strand, within TX73_001920 at 400.751 kb on - strand, within TX73_001920 at 400.828 kb on + strand, within TX73_001920 at 400.883 kb on + strand, within TX73_001920 at 400.914 kb on + strand, within TX73_001920 at 400.924 kb on + strand, within TX73_001920 at 400.932 kb on - strand, within TX73_001920 at 400.932 kb on - strand, within TX73_001920 at 401.009 kb on + strand, within TX73_001920 at 401.091 kb on + strand, within TX73_001920 at 401.093 kb on + strand, within TX73_001920 at 401.129 kb on - strand, within TX73_001920 at 401.165 kb on - strand, within TX73_001920 at 401.267 kb on + strand, within TX73_001920 at 401.312 kb on + strand, within TX73_001920 at 401.406 kb on + strand, within TX73_001920 at 401.434 kb on + strand, within TX73_001920 at 401.610 kb on - strand, within TX73_001920 at 401.630 kb on + strand, within TX73_001920 at 401.762 kb on - strand, within TX73_001920 at 401.906 kb on + strand, within TX73_001920 at 401.911 kb on - strand, within TX73_001920 at 401.916 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.926 kb on + strand, within TX73_001920 at 401.934 kb on - strand, within TX73_001920 at 401.986 kb on + strand, within TX73_001920 at 401.986 kb on + strand, within TX73_001920 at 402.002 kb on + strand, within TX73_001920 at 402.013 kb on + strand, within TX73_001920 at 402.089 kb on - strand, within TX73_001920 at 402.097 kb on - strand, within TX73_001920 at 402.131 kb on - strand, within TX73_001920 at 402.169 kb on + strand, within TX73_001920 at 402.218 kb on + strand, within TX73_001920 at 402.251 kb on + strand, within TX73_001920 at 402.253 kb on - strand, within TX73_001920 at 402.261 kb on - strand, within TX73_001920 at 402.276 kb on - strand, within TX73_001920 at 402.277 kb on - strand, within TX73_001920 at 402.311 kb on + strand, within TX73_001920 at 402.344 kb on - strand, within TX73_001920 at 402.345 kb on + strand, within TX73_001920 at 402.353 kb on - strand, within TX73_001920 at 402.456 kb on + strand, within TX73_001920 at 402.497 kb on + strand at 402.584 kb on - strand at 402.584 kb on - strand at 402.584 kb on - strand at 402.584 kb on - strand at 402.584 kb on - strand at 402.590 kb on + strand at 402.638 kb on + strand at 402.666 kb on - strand at 402.822 kb on + strand at 402.883 kb on + strand at 402.883 kb on + strand at 402.904 kb on + strand at 402.906 kb on - strand at 402.930 kb on + strand at 402.940 kb on - strand at 402.942 kb on + strand at 402.942 kb on + strand at 402.942 kb on + strand at 402.950 kb on - strand at 402.951 kb on - strand at 402.972 kb on + strand at 403.024 kb on + strand at 403.105 kb on + strand at 403.111 kb on + strand at 403.111 kb on + strand at 403.114 kb on - strand at 403.119 kb on - strand at 403.199 kb on - strand at 403.237 kb on - strand at 403.278 kb on - strand, within TX73_001925 at 403.282 kb on + strand, within TX73_001925 at 403.288 kb on - strand, within TX73_001925 at 403.305 kb on + strand, within TX73_001925 at 403.380 kb on - strand, within TX73_001925 at 403.427 kb on + strand, within TX73_001925 at 403.431 kb on - strand, within TX73_001925 at 403.437 kb on + strand, within TX73_001925 at 403.437 kb on + strand, within TX73_001925 at 403.437 kb on + strand, within TX73_001925 at 403.437 kb on + strand, within TX73_001925 at 403.437 kb on + strand, within TX73_001925 at 403.445 kb on - strand, within TX73_001925 at 403.445 kb on - strand, within TX73_001925 at 403.445 kb on - strand, within TX73_001925 at 403.445 kb on - strand, within TX73_001925 at 403.450 kb on - strand, within TX73_001925 at 403.455 kb on - strand, within TX73_001925 at 403.468 kb on + strand, within TX73_001925 at 403.486 kb on + strand, within TX73_001925 at 403.487 kb on - strand, within TX73_001925 at 403.526 kb on + strand, within TX73_001925 at 403.526 kb on + strand, within TX73_001925 at 403.534 kb on - strand, within TX73_001925 at 403.537 kb on + strand, within TX73_001925 at 403.546 kb on + strand, within TX73_001925 at 403.546 kb on - strand, within TX73_001925 at 403.555 kb on - strand, within TX73_001925 at 403.560 kb on + strand, within TX73_001925 at 403.573 kb on - strand, within TX73_001925 at 403.582 kb on + strand, within TX73_001925 at 403.605 kb on + strand, within TX73_001925 at 403.627 kb on + strand, within TX73_001925 at 403.627 kb on + strand, within TX73_001925 at 403.640 kb on - strand, within TX73_001925
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with pyruvate remove 399,143 + TX73_001905 0.83 +0.1 399,149 - TX73_001905 0.84 -0.2 399,159 - TX73_001905 0.85 +1.2 399,159 - TX73_001905 0.85 +0.4 399,192 + TX73_001905 0.89 +0.0 399,237 + +0.3 399,237 + +0.2 399,237 + +0.5 399,237 + -0.5 399,242 + +0.1 399,245 - +0.3 399,245 - +1.8 399,245 - -0.8 399,262 - -0.6 399,263 + +0.1 399,280 + -0.4 399,292 + -0.6 399,292 + -0.2 399,333 + +0.9 399,333 + -1.5 399,333 + -0.7 399,341 - -1.4 399,343 + -1.0 399,351 - +0.7 399,378 + -1.1 399,383 + -0.2 399,387 - -0.3 399,395 - +1.1 399,397 + -1.4 399,404 + +0.8 399,404 + -0.4 399,404 + +2.1 399,404 + +1.2 399,407 - +1.0 399,408 + -0.1 399,423 + TX73_001910 0.14 -0.7 399,431 - TX73_001910 0.16 +1.4 399,431 - TX73_001910 0.16 +1.0 399,431 - TX73_001910 0.16 -1.1 399,457 + TX73_001910 0.24 +0.9 399,457 + TX73_001910 0.24 +0.1 399,460 - TX73_001910 0.25 +1.4 399,462 + TX73_001910 0.26 +3.3 399,462 + TX73_001910 0.26 +0.2 399,465 - TX73_001910 0.26 -1.1 399,478 - TX73_001910 0.30 +0.6 399,495 - TX73_001910 0.35 +1.3 399,495 - TX73_001910 0.35 -0.7 399,497 - TX73_001910 0.36 -0.9 399,503 + TX73_001910 0.38 -0.0 399,511 - TX73_001910 0.40 +0.1 399,511 - TX73_001910 0.40 -0.8 399,544 + TX73_001910 0.50 -0.9 399,545 - TX73_001910 0.50 +0.2 399,547 + TX73_001910 0.51 -0.1 399,548 + TX73_001910 0.51 -0.2 399,548 + TX73_001910 0.51 +3.2 399,552 - TX73_001910 0.52 +0.9 399,552 - TX73_001910 0.52 -0.2 399,552 - TX73_001910 0.52 -0.3 399,552 - TX73_001910 0.52 -1.0 399,554 + TX73_001910 0.53 +0.4 399,556 - TX73_001910 0.54 -0.3 399,556 - TX73_001910 0.54 -1.8 399,556 - TX73_001910 0.54 -0.7 399,556 - TX73_001910 0.54 +0.9 399,562 - TX73_001910 0.55 +0.5 399,564 + TX73_001910 0.56 +1.2 399,564 + TX73_001910 0.56 +0.7 399,564 + TX73_001910 0.56 +0.4 399,564 + TX73_001910 0.56 -0.1 399,564 + TX73_001910 0.56 +1.4 399,564 + TX73_001910 0.56 -0.9 399,564 + TX73_001910 0.56 +0.9 399,564 + TX73_001910 0.56 +1.2 399,564 + TX73_001910 0.56 +0.9 399,564 + TX73_001910 0.56 +0.1 399,572 - TX73_001910 0.58 +0.4 399,590 - TX73_001910 0.64 +0.6 399,591 - TX73_001910 0.64 -0.6 399,606 + TX73_001910 0.68 +0.6 399,608 + TX73_001910 0.69 -0.1 399,610 + TX73_001910 0.70 -0.8 399,638 + TX73_001910 0.78 +0.1 399,656 - TX73_001910 0.83 +0.9 399,672 + TX73_001910 0.88 +1.7 399,684 - -1.7 399,685 + +0.3 399,685 + +0.9 399,685 + -1.2 399,687 + -2.2 399,693 - +0.6 399,713 - -0.3 399,728 + -0.4 399,750 + -2.5 399,757 + +0.9 399,763 + -1.8 399,765 - +3.3 399,776 + -0.1 399,792 - +0.2 399,805 + +0.2 399,805 + +0.1 399,816 + +0.5 399,817 - -1.4 399,826 + -0.5 399,826 + -0.7 399,827 - +0.1 399,834 - -0.6 399,863 + -2.3 399,868 + +1.8 399,871 - -0.5 399,906 + -0.8 399,944 - +0.9 399,944 - -0.8 399,950 - -0.9 399,953 + +0.2 399,961 - TX73_001915 0.15 -0.2 399,965 - TX73_001915 0.20 -0.5 399,978 + TX73_001915 0.37 -0.6 399,980 + TX73_001915 0.40 -0.0 399,982 + TX73_001915 0.43 +0.3 399,982 + TX73_001915 0.43 -0.4 399,988 - TX73_001915 0.51 -0.1 399,988 - TX73_001915 0.51 +0.2 399,990 - TX73_001915 0.53 +1.3 399,993 + TX73_001915 0.57 -0.8 400,009 + TX73_001915 0.79 -0.1 400,009 + TX73_001915 0.79 +1.1 400,009 + TX73_001915 0.79 +2.3 400,017 - -1.2 400,017 - -0.5 400,017 - +0.3 400,017 - -1.2 400,046 + -0.2 400,084 + -0.2 400,131 + +1.4 400,139 - +0.0 400,139 - -0.8 400,141 - -0.0 400,149 + +0.5 400,157 - +0.6 400,157 - -0.7 400,157 - +0.2 400,165 + -0.2 400,189 - +0.5 400,206 - -0.1 400,245 + +0.3 400,245 - +1.9 400,258 + +1.1 400,266 - +1.2 400,277 + -0.8 400,281 - -1.4 400,319 + -1.9 400,346 - +1.9 400,390 + TX73_001920 0.10 -0.1 400,402 + TX73_001920 0.11 +0.7 400,402 + TX73_001920 0.11 +1.2 400,497 + TX73_001920 0.15 +0.0 400,498 - TX73_001920 0.15 +1.3 400,523 + TX73_001920 0.16 +0.5 400,531 - TX73_001920 0.16 -1.1 400,536 + TX73_001920 0.16 +0.5 400,648 - TX73_001920 0.20 -0.9 400,682 - TX73_001920 0.22 -0.6 400,751 - TX73_001920 0.24 +0.1 400,828 + TX73_001920 0.27 +2.9 400,883 + TX73_001920 0.29 -1.2 400,914 + TX73_001920 0.31 +0.1 400,924 + TX73_001920 0.31 +3.0 400,932 - TX73_001920 0.31 -1.1 400,932 - TX73_001920 0.31 -1.0 401,009 + TX73_001920 0.34 +0.6 401,091 + TX73_001920 0.37 -1.6 401,093 + TX73_001920 0.37 -1.0 401,129 - TX73_001920 0.39 +0.4 401,165 - TX73_001920 0.40 +0.7 401,267 + TX73_001920 0.44 +0.6 401,312 + TX73_001920 0.46 -1.2 401,406 + TX73_001920 0.50 +0.9 401,434 + TX73_001920 0.51 +1.0 401,610 - TX73_001920 0.57 +0.2 401,630 + TX73_001920 0.58 -0.5 401,762 - TX73_001920 0.63 -0.8 401,906 + TX73_001920 0.69 +0.7 401,911 - TX73_001920 0.69 -0.7 401,916 + TX73_001920 0.69 +1.3 401,926 + TX73_001920 0.69 -0.9 401,926 + TX73_001920 0.69 -0.5 401,926 + TX73_001920 0.69 -1.3 401,926 + TX73_001920 0.69 +0.2 401,926 + TX73_001920 0.69 -1.2 401,926 + TX73_001920 0.69 +0.6 401,934 - TX73_001920 0.70 -1.3 401,986 + TX73_001920 0.72 -0.1 401,986 + TX73_001920 0.72 -2.3 402,002 + TX73_001920 0.72 -0.7 402,013 + TX73_001920 0.73 -0.4 402,089 - TX73_001920 0.76 -0.9 402,097 - TX73_001920 0.76 +0.9 402,131 - TX73_001920 0.77 +0.2 402,169 + TX73_001920 0.79 -0.3 402,218 + TX73_001920 0.81 -1.8 402,251 + TX73_001920 0.82 -0.3 402,253 - TX73_001920 0.82 +0.7 402,261 - TX73_001920 0.82 -1.2 402,276 - TX73_001920 0.83 +0.5 402,277 - TX73_001920 0.83 -1.6 402,311 + TX73_001920 0.84 +0.1 402,344 - TX73_001920 0.86 +0.4 402,345 + TX73_001920 0.86 -0.2 402,353 - TX73_001920 0.86 -0.4 402,456 + TX73_001920 0.90 -1.3 402,497 + -0.9 402,584 - +0.6 402,584 - -1.0 402,584 - -0.6 402,584 - -0.1 402,584 - -1.1 402,590 + +0.6 402,638 + -2.5 402,666 - -0.4 402,822 + -1.1 402,883 + -1.9 402,883 + -0.7 402,904 + -0.5 402,906 - -2.0 402,930 + +0.1 402,940 - +1.3 402,942 + -0.3 402,942 + +1.0 402,942 + -0.3 402,950 - +0.6 402,951 - -0.2 402,972 + -1.1 403,024 + +1.0 403,105 + +0.9 403,111 + +1.2 403,111 + -0.0 403,114 - +0.7 403,119 - +0.2 403,199 - +0.7 403,237 - +1.3 403,278 - TX73_001925 0.10 +1.1 403,282 + TX73_001925 0.10 -0.9 403,288 - TX73_001925 0.11 +0.7 403,305 + TX73_001925 0.11 -1.0 403,380 - TX73_001925 0.14 -0.2 403,427 + TX73_001925 0.16 +0.0 403,431 - TX73_001925 0.16 +0.5 403,437 + TX73_001925 0.17 -0.3 403,437 + TX73_001925 0.17 +0.2 403,437 + TX73_001925 0.17 +1.3 403,437 + TX73_001925 0.17 -0.3 403,437 + TX73_001925 0.17 -0.4 403,445 - TX73_001925 0.17 +0.7 403,445 - TX73_001925 0.17 -1.0 403,445 - TX73_001925 0.17 +0.6 403,445 - TX73_001925 0.17 -1.0 403,450 - TX73_001925 0.17 -0.8 403,455 - TX73_001925 0.17 -0.2 403,468 + TX73_001925 0.18 +0.1 403,486 + TX73_001925 0.19 +0.9 403,487 - TX73_001925 0.19 +1.1 403,526 + TX73_001925 0.20 +0.4 403,526 + TX73_001925 0.20 +0.3 403,534 - TX73_001925 0.21 +1.2 403,537 + TX73_001925 0.21 -0.0 403,546 + TX73_001925 0.21 -1.3 403,546 - TX73_001925 0.21 -0.3 403,555 - TX73_001925 0.22 -1.4 403,560 + TX73_001925 0.22 +0.3 403,573 - TX73_001925 0.22 +1.1 403,582 + TX73_001925 0.23 -0.1 403,605 + TX73_001925 0.24 -0.4 403,627 + TX73_001925 0.24 +7.9 403,627 + TX73_001925 0.24 -0.8 403,640 - TX73_001925 0.25 +0.9
Or see this region's nucleotide sequence