Experiment: NFM with pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001375 and TX73_001380 are separated by 52 nucleotides TX73_001380 and TX73_001385 are separated by 68 nucleotides
TX73_001375: TX73_001375 - acyltransferase family protein, at 290,514 to 292,451
_001375
TX73_001380: TX73_001380 - alginate O-acetyltransferase, at 292,504 to 293,604
_001380
TX73_001385: TX73_001385 - MBOAT family protein, at 293,673 to 295,085
_001385
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 291.540 kb on + strand, within TX73_001375 at 291.559 kb on - strand, within TX73_001375 at 291.596 kb on + strand, within TX73_001375 at 291.604 kb on - strand, within TX73_001375 at 291.611 kb on + strand, within TX73_001375 at 291.643 kb on + strand, within TX73_001375 at 291.643 kb on + strand, within TX73_001375 at 291.643 kb on + strand, within TX73_001375 at 291.643 kb on + strand, within TX73_001375 at 291.672 kb on + strand, within TX73_001375 at 291.672 kb on + strand, within TX73_001375 at 291.680 kb on - strand, within TX73_001375 at 291.680 kb on - strand, within TX73_001375 at 291.729 kb on - strand, within TX73_001375 at 291.759 kb on + strand, within TX73_001375 at 291.759 kb on + strand, within TX73_001375 at 291.817 kb on + strand, within TX73_001375 at 291.817 kb on + strand, within TX73_001375 at 291.817 kb on + strand, within TX73_001375 at 291.817 kb on + strand, within TX73_001375 at 291.823 kb on - strand, within TX73_001375 at 291.825 kb on - strand, within TX73_001375 at 291.825 kb on - strand, within TX73_001375 at 291.825 kb on - strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.834 kb on + strand, within TX73_001375 at 291.839 kb on + strand, within TX73_001375 at 291.842 kb on - strand, within TX73_001375 at 291.842 kb on - strand, within TX73_001375 at 291.850 kb on - strand, within TX73_001375 at 291.869 kb on + strand, within TX73_001375 at 291.869 kb on + strand, within TX73_001375 at 291.869 kb on + strand, within TX73_001375 at 291.898 kb on + strand, within TX73_001375 at 291.923 kb on + strand, within TX73_001375 at 291.959 kb on + strand, within TX73_001375 at 291.959 kb on + strand, within TX73_001375 at 291.982 kb on + strand, within TX73_001375 at 291.990 kb on - strand, within TX73_001375 at 292.011 kb on + strand, within TX73_001375 at 292.055 kb on + strand, within TX73_001375 at 292.055 kb on + strand, within TX73_001375 at 292.055 kb on + strand, within TX73_001375 at 292.060 kb on + strand, within TX73_001375 at 292.063 kb on - strand, within TX73_001375 at 292.063 kb on - strand, within TX73_001375 at 292.068 kb on - strand, within TX73_001375 at 292.103 kb on + strand, within TX73_001375 at 292.129 kb on + strand, within TX73_001375 at 292.155 kb on + strand, within TX73_001375 at 292.169 kb on + strand, within TX73_001375 at 292.177 kb on - strand, within TX73_001375 at 292.182 kb on + strand, within TX73_001375 at 292.182 kb on + strand, within TX73_001375 at 292.182 kb on + strand, within TX73_001375 at 292.235 kb on - strand, within TX73_001375 at 292.237 kb on - strand, within TX73_001375 at 292.281 kb on + strand at 292.281 kb on + strand at 292.281 kb on + strand at 292.281 kb on + strand at 292.289 kb on - strand at 292.289 kb on - strand at 292.289 kb on - strand at 292.314 kb on + strand at 292.326 kb on + strand at 292.334 kb on - strand at 292.355 kb on - strand at 292.357 kb on - strand at 292.396 kb on - strand at 292.396 kb on - strand at 292.459 kb on - strand at 292.485 kb on + strand at 292.485 kb on + strand at 292.493 kb on - strand at 292.493 kb on - strand at 292.493 kb on - strand at 292.493 kb on - strand at 292.493 kb on - strand at 292.493 kb on - strand at 292.500 kb on + strand at 292.503 kb on - strand at 292.503 kb on - strand at 292.503 kb on - strand at 292.508 kb on - strand at 292.508 kb on - strand at 292.510 kb on - strand at 292.510 kb on - strand at 292.555 kb on + strand at 292.581 kb on + strand at 292.596 kb on + strand at 292.602 kb on - strand at 292.616 kb on + strand, within TX73_001380 at 292.616 kb on + strand, within TX73_001380 at 292.624 kb on - strand, within TX73_001380 at 292.624 kb on - strand, within TX73_001380 at 292.624 kb on - strand, within TX73_001380 at 292.624 kb on - strand, within TX73_001380 at 292.630 kb on + strand, within TX73_001380 at 292.638 kb on - strand, within TX73_001380 at 292.643 kb on - strand, within TX73_001380 at 292.646 kb on - strand, within TX73_001380 at 292.662 kb on + strand, within TX73_001380 at 292.667 kb on + strand, within TX73_001380 at 292.702 kb on - strand, within TX73_001380 at 292.709 kb on + strand, within TX73_001380 at 292.716 kb on - strand, within TX73_001380 at 292.716 kb on - strand, within TX73_001380 at 292.740 kb on - strand, within TX73_001380 at 292.747 kb on + strand, within TX73_001380 at 292.757 kb on + strand, within TX73_001380 at 292.765 kb on - strand, within TX73_001380 at 292.770 kb on - strand, within TX73_001380 at 292.797 kb on - strand, within TX73_001380 at 292.799 kb on + strand, within TX73_001380 at 292.807 kb on - strand, within TX73_001380 at 292.871 kb on - strand, within TX73_001380 at 292.876 kb on + strand, within TX73_001380 at 292.902 kb on + strand, within TX73_001380 at 292.936 kb on + strand, within TX73_001380 at 292.945 kb on - strand, within TX73_001380 at 293.001 kb on + strand, within TX73_001380 at 293.087 kb on + strand, within TX73_001380 at 293.105 kb on - strand, within TX73_001380 at 293.110 kb on - strand, within TX73_001380 at 293.125 kb on - strand, within TX73_001380 at 293.126 kb on - strand, within TX73_001380 at 293.135 kb on + strand, within TX73_001380 at 293.138 kb on - strand, within TX73_001380 at 293.148 kb on - strand, within TX73_001380 at 293.148 kb on - strand, within TX73_001380 at 293.186 kb on + strand, within TX73_001380 at 293.194 kb on - strand, within TX73_001380 at 293.194 kb on - strand, within TX73_001380 at 293.196 kb on + strand, within TX73_001380 at 293.254 kb on - strand, within TX73_001380 at 293.281 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.282 kb on + strand, within TX73_001380 at 293.290 kb on - strand, within TX73_001380 at 293.426 kb on + strand, within TX73_001380 at 293.426 kb on - strand, within TX73_001380 at 293.478 kb on + strand, within TX73_001380 at 293.530 kb on - strand at 293.541 kb on + strand at 293.541 kb on + strand at 293.541 kb on + strand at 293.561 kb on + strand at 293.569 kb on - strand at 293.591 kb on + strand at 293.596 kb on + strand at 293.599 kb on - strand at 293.739 kb on - strand at 293.782 kb on + strand at 293.785 kb on - strand at 293.813 kb on + strand at 293.822 kb on + strand, within TX73_001385 at 293.824 kb on + strand, within TX73_001385 at 293.830 kb on + strand, within TX73_001385 at 293.832 kb on - strand, within TX73_001385 at 293.835 kb on + strand, within TX73_001385 at 293.835 kb on + strand, within TX73_001385 at 293.843 kb on - strand, within TX73_001385 at 293.848 kb on - strand, within TX73_001385 at 293.848 kb on - strand, within TX73_001385 at 293.858 kb on - strand, within TX73_001385 at 293.860 kb on + strand, within TX73_001385 at 293.860 kb on + strand, within TX73_001385 at 293.863 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.868 kb on - strand, within TX73_001385 at 293.878 kb on + strand, within TX73_001385 at 293.881 kb on + strand, within TX73_001385 at 293.904 kb on + strand, within TX73_001385 at 293.950 kb on - strand, within TX73_001385 at 293.971 kb on - strand, within TX73_001385 at 293.978 kb on + strand, within TX73_001385 at 294.001 kb on - strand, within TX73_001385 at 294.075 kb on + strand, within TX73_001385 at 294.125 kb on - strand, within TX73_001385 at 294.131 kb on + strand, within TX73_001385 at 294.203 kb on - strand, within TX73_001385 at 294.221 kb on - strand, within TX73_001385 at 294.223 kb on - strand, within TX73_001385 at 294.263 kb on + strand, within TX73_001385 at 294.343 kb on - strand, within TX73_001385 at 294.371 kb on - strand, within TX73_001385 at 294.379 kb on - strand, within TX73_001385 at 294.385 kb on + strand, within TX73_001385 at 294.385 kb on + strand, within TX73_001385 at 294.393 kb on - strand, within TX73_001385 at 294.411 kb on - strand, within TX73_001385 at 294.417 kb on + strand, within TX73_001385 at 294.440 kb on + strand, within TX73_001385 at 294.461 kb on + strand, within TX73_001385 at 294.477 kb on - strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.530 kb on + strand, within TX73_001385 at 294.545 kb on - strand, within TX73_001385 at 294.577 kb on - strand, within TX73_001385
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with pyruvate remove 291,540 + TX73_001375 0.53 +1.2 291,559 - TX73_001375 0.54 +0.7 291,596 + TX73_001375 0.56 +0.1 291,604 - TX73_001375 0.56 -1.4 291,611 + TX73_001375 0.57 -0.1 291,643 + TX73_001375 0.58 +0.4 291,643 + TX73_001375 0.58 +0.8 291,643 + TX73_001375 0.58 +0.4 291,643 + TX73_001375 0.58 -0.5 291,672 + TX73_001375 0.60 +0.2 291,672 + TX73_001375 0.60 +1.4 291,680 - TX73_001375 0.60 +0.3 291,680 - TX73_001375 0.60 +0.5 291,729 - TX73_001375 0.63 -0.2 291,759 + TX73_001375 0.64 +1.5 291,759 + TX73_001375 0.64 -0.6 291,817 + TX73_001375 0.67 +0.0 291,817 + TX73_001375 0.67 +0.3 291,817 + TX73_001375 0.67 -1.4 291,817 + TX73_001375 0.67 +2.6 291,823 - TX73_001375 0.68 -0.5 291,825 - TX73_001375 0.68 +0.5 291,825 - TX73_001375 0.68 +0.7 291,825 - TX73_001375 0.68 -0.0 291,834 + TX73_001375 0.68 -0.3 291,834 + TX73_001375 0.68 -0.6 291,834 + TX73_001375 0.68 +0.1 291,834 + TX73_001375 0.68 -0.4 291,834 + TX73_001375 0.68 +1.1 291,834 + TX73_001375 0.68 +0.5 291,834 + TX73_001375 0.68 -0.9 291,839 + TX73_001375 0.68 +0.2 291,842 - TX73_001375 0.69 -1.5 291,842 - TX73_001375 0.69 +1.8 291,850 - TX73_001375 0.69 -1.5 291,869 + TX73_001375 0.70 -0.7 291,869 + TX73_001375 0.70 +0.4 291,869 + TX73_001375 0.70 +0.1 291,898 + TX73_001375 0.71 +0.9 291,923 + TX73_001375 0.73 +0.4 291,959 + TX73_001375 0.75 +0.4 291,959 + TX73_001375 0.75 -1.6 291,982 + TX73_001375 0.76 -0.9 291,990 - TX73_001375 0.76 -0.2 292,011 + TX73_001375 0.77 -0.2 292,055 + TX73_001375 0.80 +0.3 292,055 + TX73_001375 0.80 +0.3 292,055 + TX73_001375 0.80 -1.4 292,060 + TX73_001375 0.80 -0.0 292,063 - TX73_001375 0.80 +2.3 292,063 - TX73_001375 0.80 -2.0 292,068 - TX73_001375 0.80 -0.9 292,103 + TX73_001375 0.82 +1.0 292,129 + TX73_001375 0.83 -0.5 292,155 + TX73_001375 0.85 -0.3 292,169 + TX73_001375 0.85 -0.9 292,177 - TX73_001375 0.86 +0.0 292,182 + TX73_001375 0.86 +0.3 292,182 + TX73_001375 0.86 +1.1 292,182 + TX73_001375 0.86 +1.3 292,235 - TX73_001375 0.89 +1.1 292,237 - TX73_001375 0.89 -0.2 292,281 + -0.7 292,281 + -0.0 292,281 + +0.7 292,281 + +0.5 292,289 - -1.6 292,289 - +1.0 292,289 - -0.8 292,314 + +0.0 292,326 + +1.4 292,334 - -0.5 292,355 - +0.2 292,357 - -0.2 292,396 - +0.2 292,396 - -0.3 292,459 - -0.6 292,485 + -1.1 292,485 + -0.9 292,493 - +0.6 292,493 - +2.2 292,493 - -0.4 292,493 - -1.6 292,493 - -0.0 292,493 - -2.0 292,500 + -1.1 292,503 - -2.4 292,503 - -2.4 292,503 - +1.0 292,508 - -0.7 292,508 - +0.3 292,510 - -0.2 292,510 - -0.0 292,555 + -1.5 292,581 + +2.4 292,596 + +0.2 292,602 - -0.2 292,616 + TX73_001380 0.10 -0.3 292,616 + TX73_001380 0.10 +0.6 292,624 - TX73_001380 0.11 -0.7 292,624 - TX73_001380 0.11 -1.8 292,624 - TX73_001380 0.11 -0.7 292,624 - TX73_001380 0.11 -0.6 292,630 + TX73_001380 0.11 -0.2 292,638 - TX73_001380 0.12 +1.0 292,643 - TX73_001380 0.13 +1.1 292,646 - TX73_001380 0.13 +0.1 292,662 + TX73_001380 0.14 -1.1 292,667 + TX73_001380 0.15 -0.5 292,702 - TX73_001380 0.18 -0.5 292,709 + TX73_001380 0.19 -0.4 292,716 - TX73_001380 0.19 +0.5 292,716 - TX73_001380 0.19 +0.6 292,740 - TX73_001380 0.21 -0.0 292,747 + TX73_001380 0.22 -1.9 292,757 + TX73_001380 0.23 -0.3 292,765 - TX73_001380 0.24 -1.0 292,770 - TX73_001380 0.24 +0.7 292,797 - TX73_001380 0.27 +0.6 292,799 + TX73_001380 0.27 +0.2 292,807 - TX73_001380 0.28 +0.4 292,871 - TX73_001380 0.33 +0.1 292,876 + TX73_001380 0.34 +0.4 292,902 + TX73_001380 0.36 +0.3 292,936 + TX73_001380 0.39 +0.9 292,945 - TX73_001380 0.40 -0.3 293,001 + TX73_001380 0.45 -1.8 293,087 + TX73_001380 0.53 -0.2 293,105 - TX73_001380 0.55 -0.9 293,110 - TX73_001380 0.55 -0.3 293,125 - TX73_001380 0.56 +0.9 293,126 - TX73_001380 0.56 +9.2 293,135 + TX73_001380 0.57 -0.0 293,138 - TX73_001380 0.58 +0.6 293,148 - TX73_001380 0.58 +0.6 293,148 - TX73_001380 0.58 -0.0 293,186 + TX73_001380 0.62 -0.1 293,194 - TX73_001380 0.63 -1.3 293,194 - TX73_001380 0.63 -0.2 293,196 + TX73_001380 0.63 -0.4 293,254 - TX73_001380 0.68 +0.8 293,281 + TX73_001380 0.71 -0.1 293,282 + TX73_001380 0.71 +0.0 293,282 + TX73_001380 0.71 -0.7 293,282 + TX73_001380 0.71 -1.2 293,290 - TX73_001380 0.71 -0.1 293,426 + TX73_001380 0.84 -1.1 293,426 - TX73_001380 0.84 -0.2 293,478 + TX73_001380 0.88 -2.9 293,530 - +0.5 293,541 + +0.3 293,541 + -0.7 293,541 + -1.6 293,561 + -0.2 293,569 - -0.6 293,591 + -0.4 293,596 + -2.1 293,599 - -1.0 293,739 - +2.4 293,782 + -0.4 293,785 - +0.1 293,813 + +1.2 293,822 + TX73_001385 0.11 -1.9 293,824 + TX73_001385 0.11 +3.2 293,830 + TX73_001385 0.11 +0.6 293,832 - TX73_001385 0.11 -0.9 293,835 + TX73_001385 0.11 -0.8 293,835 + TX73_001385 0.11 -1.6 293,843 - TX73_001385 0.12 -2.3 293,848 - TX73_001385 0.12 +0.6 293,848 - TX73_001385 0.12 +0.2 293,858 - TX73_001385 0.13 -0.5 293,860 + TX73_001385 0.13 +0.0 293,860 + TX73_001385 0.13 +0.6 293,863 - TX73_001385 0.13 +0.4 293,868 - TX73_001385 0.14 +0.5 293,868 - TX73_001385 0.14 +1.6 293,868 - TX73_001385 0.14 -0.2 293,878 + TX73_001385 0.15 +0.4 293,881 + TX73_001385 0.15 -0.5 293,904 + TX73_001385 0.16 +0.1 293,950 - TX73_001385 0.20 +0.2 293,971 - TX73_001385 0.21 +1.6 293,978 + TX73_001385 0.22 +0.2 294,001 - TX73_001385 0.23 -0.3 294,075 + TX73_001385 0.28 -0.9 294,125 - TX73_001385 0.32 +3.0 294,131 + TX73_001385 0.32 -1.5 294,203 - TX73_001385 0.38 -0.9 294,221 - TX73_001385 0.39 +0.8 294,223 - TX73_001385 0.39 +0.3 294,263 + TX73_001385 0.42 +0.8 294,343 - TX73_001385 0.47 -0.3 294,371 - TX73_001385 0.49 -1.3 294,379 - TX73_001385 0.50 -1.1 294,385 + TX73_001385 0.50 +0.7 294,385 + TX73_001385 0.50 +1.4 294,393 - TX73_001385 0.51 -0.8 294,411 - TX73_001385 0.52 +0.6 294,417 + TX73_001385 0.53 -1.9 294,440 + TX73_001385 0.54 -0.2 294,461 + TX73_001385 0.56 -0.9 294,477 - TX73_001385 0.57 +0.0 294,530 + TX73_001385 0.61 +0.4 294,530 + TX73_001385 0.61 +0.7 294,530 + TX73_001385 0.61 -0.4 294,545 - TX73_001385 0.62 -0.2 294,577 - TX73_001385 0.64 +2.0
Or see this region's nucleotide sequence