Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000845

Experiment: NFM with pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000840 and TX73_000845 are separated by 151 nucleotidesTX73_000845 and TX73_000850 are separated by 138 nucleotides TX73_000840: TX73_000840 - DMT family transporter, at 179,631 to 180,536 _000840 TX73_000845: TX73_000845 - GTPase ObgE, at 180,688 to 181,749 _000845 TX73_000850: TX73_000850 - glutamate 5-kinase, at 181,888 to 183,018 _000850 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 179.727 kb on + strand, within TX73_000840at 179.735 kb on - strand, within TX73_000840at 179.745 kb on - strand, within TX73_000840at 179.754 kb on + strand, within TX73_000840at 179.779 kb on + strand, within TX73_000840at 179.844 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.849 kb on - strand, within TX73_000840at 179.871 kb on - strand, within TX73_000840at 179.871 kb on - strand, within TX73_000840at 179.886 kb on - strand, within TX73_000840at 179.903 kb on + strand, within TX73_000840at 179.927 kb on + strand, within TX73_000840at 179.927 kb on + strand, within TX73_000840at 179.935 kb on - strand, within TX73_000840at 179.935 kb on - strand, within TX73_000840at 179.940 kb on - strand, within TX73_000840at 179.945 kb on - strand, within TX73_000840at 179.960 kb on + strand, within TX73_000840at 179.967 kb on + strand, within TX73_000840at 179.968 kb on - strand, within TX73_000840at 179.974 kb on + strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.975 kb on - strand, within TX73_000840at 179.986 kb on - strand, within TX73_000840at 180.015 kb on - strand, within TX73_000840at 180.019 kb on + strand, within TX73_000840at 180.020 kb on - strand, within TX73_000840at 180.025 kb on - strand, within TX73_000840at 180.044 kb on - strand, within TX73_000840at 180.061 kb on - strand, within TX73_000840at 180.071 kb on - strand, within TX73_000840at 180.071 kb on - strand, within TX73_000840at 180.077 kb on - strand, within TX73_000840at 180.084 kb on - strand, within TX73_000840at 180.119 kb on - strand, within TX73_000840at 180.149 kb on - strand, within TX73_000840at 180.162 kb on - strand, within TX73_000840at 180.198 kb on + strand, within TX73_000840at 180.207 kb on - strand, within TX73_000840at 180.243 kb on - strand, within TX73_000840at 180.244 kb on + strand, within TX73_000840at 180.244 kb on + strand, within TX73_000840at 180.246 kb on + strand, within TX73_000840at 180.252 kb on - strand, within TX73_000840at 180.290 kb on + strand, within TX73_000840at 180.296 kb on + strand, within TX73_000840at 180.304 kb on + strand, within TX73_000840at 180.304 kb on + strand, within TX73_000840at 180.334 kb on + strand, within TX73_000840at 180.339 kb on + strand, within TX73_000840at 180.339 kb on + strand, within TX73_000840at 180.342 kb on - strand, within TX73_000840at 180.386 kb on + strand, within TX73_000840at 180.418 kb on + strand, within TX73_000840at 180.468 kb on + strandat 180.476 kb on - strandat 180.483 kb on + strandat 180.491 kb on - strandat 180.500 kb on + strandat 180.500 kb on + strandat 180.500 kb on + strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.508 kb on - strandat 180.519 kb on - strandat 180.530 kb on + strandat 180.530 kb on + strandat 180.535 kb on + strandat 180.538 kb on - strandat 180.538 kb on - strandat 180.543 kb on - strandat 180.577 kb on + strandat 180.587 kb on + strandat 180.594 kb on - strandat 180.597 kb on + strandat 180.597 kb on + strandat 180.600 kb on - strandat 180.620 kb on + strandat 180.622 kb on + strandat 180.623 kb on - strandat 180.623 kb on - strandat 180.657 kb on - strandat 180.657 kb on - strandat 180.668 kb on - strandat 180.669 kb on - strandat 181.662 kb on + strandat 181.686 kb on - strandat 181.720 kb on + strandat 181.722 kb on - strandat 181.722 kb on - strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.725 kb on + strandat 181.733 kb on - strandat 181.733 kb on - strandat 181.743 kb on + strandat 181.753 kb on + strandat 181.767 kb on + strandat 181.767 kb on + strandat 181.767 kb on + strandat 181.775 kb on - strandat 181.813 kb on + strandat 181.818 kb on + strandat 181.821 kb on - strandat 181.821 kb on - strandat 181.826 kb on - strandat 181.831 kb on + strandat 181.839 kb on - strandat 181.844 kb on - strandat 181.853 kb on + strandat 181.864 kb on - strandat 181.885 kb on + strandat 181.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with pyruvate
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179,727 + TX73_000840 0.11 -0.3
179,735 - TX73_000840 0.11 -0.8
179,745 - TX73_000840 0.13 -0.6
179,754 + TX73_000840 0.14 -0.6
179,779 + TX73_000840 0.16 -1.6
179,844 - TX73_000840 0.24 +0.2
179,849 - TX73_000840 0.24 -0.2
179,849 - TX73_000840 0.24 +0.2
179,849 - TX73_000840 0.24 +1.0
179,871 - TX73_000840 0.26 -0.5
179,871 - TX73_000840 0.26 +1.3
179,886 - TX73_000840 0.28 +0.1
179,903 + TX73_000840 0.30 -0.9
179,927 + TX73_000840 0.33 -0.1
179,927 + TX73_000840 0.33 -0.4
179,935 - TX73_000840 0.34 +0.1
179,935 - TX73_000840 0.34 +1.0
179,940 - TX73_000840 0.34 -0.8
179,945 - TX73_000840 0.35 -0.1
179,960 + TX73_000840 0.36 +0.8
179,967 + TX73_000840 0.37 -0.7
179,968 - TX73_000840 0.37 -0.2
179,974 + TX73_000840 0.38 -1.0
179,975 - TX73_000840 0.38 -0.5
179,975 - TX73_000840 0.38 +0.1
179,975 - TX73_000840 0.38 -0.5
179,986 - TX73_000840 0.39 -0.2
180,015 - TX73_000840 0.42 -0.2
180,019 + TX73_000840 0.43 -1.5
180,020 - TX73_000840 0.43 +0.1
180,025 - TX73_000840 0.43 -0.4
180,044 - TX73_000840 0.46 -1.5
180,061 - TX73_000840 0.47 -1.8
180,071 - TX73_000840 0.49 -0.2
180,071 - TX73_000840 0.49 +0.9
180,077 - TX73_000840 0.49 -0.0
180,084 - TX73_000840 0.50 +1.8
180,119 - TX73_000840 0.54 -1.3
180,149 - TX73_000840 0.57 +1.4
180,162 - TX73_000840 0.59 -0.7
180,198 + TX73_000840 0.63 -1.6
180,207 - TX73_000840 0.64 +1.4
180,243 - TX73_000840 0.68 +1.1
180,244 + TX73_000840 0.68 -1.6
180,244 + TX73_000840 0.68 -1.0
180,246 + TX73_000840 0.68 +0.9
180,252 - TX73_000840 0.69 -0.2
180,290 + TX73_000840 0.73 -1.7
180,296 + TX73_000840 0.73 +6.7
180,304 + TX73_000840 0.74 +0.0
180,304 + TX73_000840 0.74 -0.9
180,334 + TX73_000840 0.78 +2.1
180,339 + TX73_000840 0.78 -0.1
180,339 + TX73_000840 0.78 -0.9
180,342 - TX73_000840 0.78 +0.8
180,386 + TX73_000840 0.83 +0.4
180,418 + TX73_000840 0.87 -0.2
180,468 + -0.1
180,476 - -0.6
180,483 + -0.6
180,491 - +0.5
180,500 + +1.2
180,500 + +1.2
180,500 + -0.5
180,508 - +1.0
180,508 - +0.6
180,508 - -0.7
180,508 - -0.5
180,508 - +0.3
180,519 - +0.8
180,530 + -0.1
180,530 + +0.7
180,535 + -0.1
180,538 - +0.7
180,538 - -0.2
180,543 - +0.3
180,577 + +0.9
180,587 + +1.0
180,594 - +0.7
180,597 + -0.9
180,597 + -0.5
180,600 - +0.0
180,620 + -0.7
180,622 + -0.4
180,623 - +1.0
180,623 - -1.0
180,657 - -0.1
180,657 - -2.0
180,668 - -0.5
180,669 - -2.0
181,662 + -1.4
181,686 - -1.3
181,720 + -1.2
181,722 - -1.7
181,722 - +0.4
181,725 + +0.8
181,725 + +1.1
181,725 + -0.0
181,725 + +0.7
181,725 + -1.7
181,725 + +0.1
181,725 + +0.4
181,725 + -1.2
181,733 - +0.3
181,733 - -1.1
181,743 + -0.0
181,753 + +0.5
181,767 + -2.5
181,767 + -0.4
181,767 + -0.3
181,775 - -0.9
181,813 + -0.3
181,818 + +0.7
181,821 - +0.8
181,821 - +0.7
181,826 - +1.1
181,831 + +0.4
181,839 - -0.9
181,844 - -0.1
181,853 + -0.3
181,864 - -0.9
181,885 + +0.0
181,893 - -0.2

Or see this region's nucleotide sequence