Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000550

Experiment: NFM with pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000545 and TX73_000550 are separated by 19 nucleotidesTX73_000550 and TX73_000555 are separated by 29 nucleotides TX73_000545: TX73_000545 - ABC transporter substrate-binding protein, at 121,313 to 122,521 _000545 TX73_000550: TX73_000550 - zinc-binding dehydrogenase, at 122,541 to 123,581 _000550 TX73_000555: TX73_000555 - thiamine pyrophosphate-binding protein, at 123,611 to 125,359 _000555 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.602 kb on - strand, within TX73_000545at 121.624 kb on + strand, within TX73_000545at 121.714 kb on + strand, within TX73_000545at 121.722 kb on - strand, within TX73_000545at 121.802 kb on - strand, within TX73_000545at 121.804 kb on + strand, within TX73_000545at 121.820 kb on - strand, within TX73_000545at 121.855 kb on - strand, within TX73_000545at 121.857 kb on - strand, within TX73_000545at 121.873 kb on + strand, within TX73_000545at 122.040 kb on + strand, within TX73_000545at 122.094 kb on - strand, within TX73_000545at 122.255 kb on - strand, within TX73_000545at 122.299 kb on - strand, within TX73_000545at 122.307 kb on - strand, within TX73_000545at 122.352 kb on - strand, within TX73_000545at 122.371 kb on + strand, within TX73_000545at 122.441 kb on + strandat 122.494 kb on - strandat 122.615 kb on - strandat 122.631 kb on + strandat 122.788 kb on + strand, within TX73_000550at 122.851 kb on - strand, within TX73_000550at 123.103 kb on - strand, within TX73_000550at 123.139 kb on + strand, within TX73_000550at 123.154 kb on + strand, within TX73_000550at 123.250 kb on + strand, within TX73_000550at 123.268 kb on + strand, within TX73_000550at 123.365 kb on + strand, within TX73_000550at 123.416 kb on - strand, within TX73_000550at 123.453 kb on + strand, within TX73_000550at 123.458 kb on + strand, within TX73_000550at 123.466 kb on - strand, within TX73_000550at 123.574 kb on + strandat 123.574 kb on + strandat 123.594 kb on + strandat 123.597 kb on - strandat 123.599 kb on + strandat 123.599 kb on + strandat 123.599 kb on + strandat 123.599 kb on + strandat 123.607 kb on - strandat 123.607 kb on - strandat 123.614 kb on + strandat 123.617 kb on - strandat 123.645 kb on - strandat 123.714 kb on - strandat 123.855 kb on - strand, within TX73_000555at 123.891 kb on + strand, within TX73_000555at 123.943 kb on + strand, within TX73_000555at 124.003 kb on + strand, within TX73_000555at 124.017 kb on + strand, within TX73_000555at 124.035 kb on - strand, within TX73_000555at 124.057 kb on - strand, within TX73_000555at 124.083 kb on + strand, within TX73_000555at 124.084 kb on + strand, within TX73_000555at 124.091 kb on - strand, within TX73_000555at 124.118 kb on - strand, within TX73_000555at 124.235 kb on - strand, within TX73_000555at 124.281 kb on - strand, within TX73_000555at 124.447 kb on + strand, within TX73_000555at 124.479 kb on + strand, within TX73_000555at 124.503 kb on - strand, within TX73_000555

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with pyruvate
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121,602 - TX73_000545 0.24 +1.0
121,624 + TX73_000545 0.26 -1.1
121,714 + TX73_000545 0.33 +0.1
121,722 - TX73_000545 0.34 +0.8
121,802 - TX73_000545 0.40 +0.7
121,804 + TX73_000545 0.41 +0.6
121,820 - TX73_000545 0.42 -2.9
121,855 - TX73_000545 0.45 -0.7
121,857 - TX73_000545 0.45 -1.0
121,873 + TX73_000545 0.46 +0.7
122,040 + TX73_000545 0.60 -0.4
122,094 - TX73_000545 0.65 -0.6
122,255 - TX73_000545 0.78 +1.1
122,299 - TX73_000545 0.82 -0.8
122,307 - TX73_000545 0.82 -0.7
122,352 - TX73_000545 0.86 -0.2
122,371 + TX73_000545 0.88 -1.0
122,441 + +1.7
122,494 - -0.2
122,615 - +1.0
122,631 + +1.5
122,788 + TX73_000550 0.24 +0.0
122,851 - TX73_000550 0.30 +0.1
123,103 - TX73_000550 0.54 +0.1
123,139 + TX73_000550 0.57 +0.4
123,154 + TX73_000550 0.59 +0.2
123,250 + TX73_000550 0.68 +0.1
123,268 + TX73_000550 0.70 -0.4
123,365 + TX73_000550 0.79 +1.0
123,416 - TX73_000550 0.84 -1.2
123,453 + TX73_000550 0.88 -0.8
123,458 + TX73_000550 0.88 -0.0
123,466 - TX73_000550 0.89 +0.7
123,574 + -0.4
123,574 + -0.9
123,594 + +0.4
123,597 - -0.8
123,599 + -0.0
123,599 + +0.1
123,599 + -0.1
123,599 + +0.1
123,607 - +0.3
123,607 - +0.6
123,614 + -0.3
123,617 - -0.7
123,645 - +0.6
123,714 - +1.1
123,855 - TX73_000555 0.14 +0.3
123,891 + TX73_000555 0.16 +0.6
123,943 + TX73_000555 0.19 +2.0
124,003 + TX73_000555 0.22 +0.1
124,017 + TX73_000555 0.23 +0.3
124,035 - TX73_000555 0.24 -0.3
124,057 - TX73_000555 0.26 +1.0
124,083 + TX73_000555 0.27 +0.8
124,084 + TX73_000555 0.27 -1.1
124,091 - TX73_000555 0.27 -0.4
124,118 - TX73_000555 0.29 +0.4
124,235 - TX73_000555 0.36 +0.8
124,281 - TX73_000555 0.38 +0.3
124,447 + TX73_000555 0.48 +0.7
124,479 + TX73_000555 0.50 +0.6
124,503 - TX73_000555 0.51 +1.3

Or see this region's nucleotide sequence