Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15680 and HMPREF1058_RS15675 are separated by 94 nucleotides HMPREF1058_RS15675 and HMPREF1058_RS15670 are separated by 94 nucleotides
HMPREF1058_RS15680: HMPREF1058_RS15680 - molecular chaperone DnaJ, at 858,014 to 859,189
_RS15680
HMPREF1058_RS15675: HMPREF1058_RS15675 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 859,284 to 860,570
_RS15675
HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759
_RS15670
Position (kb) 859
860
861 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 858.480 kb on + strand, within HMPREF1058_RS15680 at 859.063 kb on + strand, within HMPREF1058_RS15680 at 859.081 kb on + strand at 860.620 kb on + strand at 860.636 kb on - strand at 860.638 kb on - strand at 860.661 kb on + strand at 860.800 kb on + strand, within HMPREF1058_RS15670 at 860.816 kb on + strand, within HMPREF1058_RS15670 at 860.817 kb on - strand, within HMPREF1058_RS15670 at 860.817 kb on - strand at 860.821 kb on - strand, within HMPREF1058_RS15670 at 860.848 kb on + strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.874 kb on + strand, within HMPREF1058_RS15670 at 860.877 kb on + strand, within HMPREF1058_RS15670 at 860.878 kb on - strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.890 kb on - strand at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand at 861.155 kb on + strand, within HMPREF1058_RS15670 at 861.159 kb on + strand, within HMPREF1058_RS15670 at 861.215 kb on + strand, within HMPREF1058_RS15670 at 861.216 kb on - strand, within HMPREF1058_RS15670 at 861.310 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.359 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.465 kb on - strand, within HMPREF1058_RS15670 at 861.544 kb on + strand, within HMPREF1058_RS15670 at 861.549 kb on + strand, within HMPREF1058_RS15670
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 858,480 + HMPREF1058_RS15680 0.40 -2.2 859,063 + HMPREF1058_RS15680 0.89 +0.9 859,081 + +0.0 860,620 + -2.2 860,636 - -0.9 860,638 - -1.0 860,661 + -0.2 860,800 + HMPREF1058_RS15670 0.12 -1.9 860,816 + HMPREF1058_RS15670 0.14 -3.6 860,817 - HMPREF1058_RS15670 0.14 -2.3 860,817 - -0.0 860,821 - HMPREF1058_RS15670 0.14 -2.0 860,848 + HMPREF1058_RS15670 0.17 -1.7 860,849 - HMPREF1058_RS15670 0.17 -0.5 860,849 - HMPREF1058_RS15670 0.17 -0.9 860,874 + HMPREF1058_RS15670 0.19 -0.9 860,877 + HMPREF1058_RS15670 0.19 -1.2 860,878 - HMPREF1058_RS15670 0.19 -0.7 860,879 + HMPREF1058_RS15670 0.20 -0.7 860,879 + HMPREF1058_RS15670 0.20 -2.1 860,890 - +0.7 860,980 + HMPREF1058_RS15670 0.29 -2.7 860,980 + HMPREF1058_RS15670 0.29 -0.9 860,980 + +0.3 861,155 + HMPREF1058_RS15670 0.45 -1.8 861,159 + HMPREF1058_RS15670 0.45 -1.4 861,215 + HMPREF1058_RS15670 0.50 -0.0 861,216 - HMPREF1058_RS15670 0.50 -0.0 861,310 + HMPREF1058_RS15670 0.59 -0.1 861,329 + HMPREF1058_RS15670 0.61 -0.7 861,329 + HMPREF1058_RS15670 0.61 -1.3 861,359 + HMPREF1058_RS15670 0.63 -0.7 861,460 + HMPREF1058_RS15670 0.73 -0.2 861,460 + HMPREF1058_RS15670 0.73 -1.7 861,465 - HMPREF1058_RS15670 0.73 -0.7 861,544 + HMPREF1058_RS15670 0.80 -4.9 861,549 + HMPREF1058_RS15670 0.81 -1.2
Or see this region's nucleotide sequence