Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15140

Experiment: D-Galactose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose (C)
998,336	+		HMPREF1058_RS15145	0.34	+2.3
998,364	-		HMPREF1058_RS15145	0.36	+0.7
998,408	+		HMPREF1058_RS15145	0.40	+0.6
998,412	+		HMPREF1058_RS15145	0.40	-1.0
998,457	+		HMPREF1058_RS15145	0.43	-1.6
998,459	+		HMPREF1058_RS15145	0.43	-0.4
998,564	+		HMPREF1058_RS15145	0.51	-1.0
998,570	+		HMPREF1058_RS15145	0.51	-0.4
998,574	+		HMPREF1058_RS15145	0.51	+0.3
998,575	-		HMPREF1058_RS15145	0.52	+1.1
998,575	-		HMPREF1058_RS15145	0.52	-0.6
998,575	-		HMPREF1058_RS15145	0.52	+1.5
998,605	-		HMPREF1058_RS15145	0.54	+0.6
998,605	-		HMPREF1058_RS15145	0.54	-1.2
998,685	-		HMPREF1058_RS15145	0.59	+0.9
998,686	+		HMPREF1058_RS15145	0.59	+0.1
998,686	+		HMPREF1058_RS15145	0.59	+0.0
998,686	+		HMPREF1058_RS15145	0.59	+0.0
998,686	+		HMPREF1058_RS15145	0.59	-1.9
998,686	+		HMPREF1058_RS15145	0.59	-0.9
998,727	+		HMPREF1058_RS15145	0.62	-1.4
998,908	+		HMPREF1058_RS15145	0.75	-0.2
998,909	-		HMPREF1058_RS15145	0.76	+0.1
998,913	+		HMPREF1058_RS15145	0.76	-0.7
998,914	-		HMPREF1058_RS15145	0.76	+0.5
998,916	-		HMPREF1058_RS15145	0.76	-0.2
998,925	+		HMPREF1058_RS15145	0.77	+0.3
998,925	+		HMPREF1058_RS15145	0.77	-0.1
998,925	+		HMPREF1058_RS15145	0.77	-1.0
998,934	-		HMPREF1058_RS15145	0.77	+0.1
998,985	+		HMPREF1058_RS15145	0.81	-0.9
998,995	+		HMPREF1058_RS15145	0.82	-0.1
999,039	+		HMPREF1058_RS15145	0.85	-1.7
999,040	-		HMPREF1058_RS15145	0.85	-0.7
999,040	-		HMPREF1058_RS15145	0.85	-0.3
999,081	+		HMPREF1058_RS15145	0.88	-0.1
999,081	+		HMPREF1058_RS15145	0.88	+0.2
999,169	-				-0.6
999,186	-				-0.2
999,294	+				+1.6
999,296	+				+0.2
999,349	-				+1.1
999,349	-				+0.6
999,351	-				+0.1
999,366	+				-0.1
999,478	-				-0.5
999,493	-				+0.4
999,508	+				-0.4
999,547	-				+0.0
999,556	-				+1.5
999,660	+		HMPREF1058_RS15140	0.11	+0.4
999,663	-		HMPREF1058_RS15140	0.11	-0.1
999,683	-		HMPREF1058_RS15140	0.12	-0.2
999,703	+		HMPREF1058_RS15140	0.12	-0.6
999,712	-		HMPREF1058_RS15140	0.13	+1.0
999,790	+		HMPREF1058_RS15140	0.15	+0.0
999,790	+		HMPREF1058_RS15140	0.15	+0.3
999,790	+		HMPREF1058_RS15140	0.15	+0.5
999,790	+		HMPREF1058_RS15140	0.15	-1.4
999,838	-		HMPREF1058_RS15140	0.16	+1.1
999,842	+		HMPREF1058_RS15140	0.16	+0.5
999,842	+		HMPREF1058_RS15140	0.16	+0.0
999,891	+		HMPREF1058_RS15140	0.18	+0.1
999,891	+		HMPREF1058_RS15140	0.18	+0.2
999,903	+		HMPREF1058_RS15140	0.18	+0.2
999,930	+		HMPREF1058_RS15140	0.19	+0.1
999,939	+		HMPREF1058_RS15140	0.19	-0.0
999,941	+		HMPREF1058_RS15140	0.19	+0.2
1,000,000	-		HMPREF1058_RS15140	0.21	+0.1
1,000,042	-		HMPREF1058_RS15140	0.22	+1.0
1,000,045	+		HMPREF1058_RS15140	0.22	+0.7
1,000,055	-		HMPREF1058_RS15140	0.23	+0.4
1,000,077	+		HMPREF1058_RS15140	0.23	-0.5
1,000,156	-		HMPREF1058_RS15140	0.25	+0.6
1,000,166	+		HMPREF1058_RS15140	0.26	-0.8
1,000,167	-		HMPREF1058_RS15140	0.26	+1.1
1,000,169	+		HMPREF1058_RS15140	0.26	-1.2
1,000,169	+		HMPREF1058_RS15140	0.26	+1.8
1,000,179	+		HMPREF1058_RS15140	0.26	-0.9
1,000,179	+		HMPREF1058_RS15140	0.26	+1.2
1,000,230	+		HMPREF1058_RS15140	0.28	+0.2
1,000,231	-		HMPREF1058_RS15140	0.28	+1.0
1,000,280	+		HMPREF1058_RS15140	0.29	-1.0
1,000,309	-		HMPREF1058_RS15140	0.30	+0.7
1,000,311	-		HMPREF1058_RS15140	0.30	-1.0
1,000,335	-		HMPREF1058_RS15140	0.31	-1.0
1,000,373	+		HMPREF1058_RS15140	0.32	+0.9
1,000,373	+		HMPREF1058_RS15140	0.32	-0.7
1,000,374	-		HMPREF1058_RS15140	0.32	-1.6
1,000,408	-		HMPREF1058_RS15140	0.33	-1.1
1,000,432	-		HMPREF1058_RS15140	0.33	+0.6
1,000,432	-		HMPREF1058_RS15140	0.33	-0.8
1,000,479	-		HMPREF1058_RS15140	0.35	-1.0
1,000,479	-		HMPREF1058_RS15140	0.35	+0.2
1,000,522	-		HMPREF1058_RS15140	0.36	-0.8
1,000,522	-		HMPREF1058_RS15140	0.36	+0.8
1,000,538	+		HMPREF1058_RS15140	0.36	-0.2
1,000,554	+		HMPREF1058_RS15140	0.37	+0.1
1,000,554	+		HMPREF1058_RS15140	0.37	+0.6
1,000,554	+		HMPREF1058_RS15140	0.37	+0.1
1,000,556	+		HMPREF1058_RS15140	0.37	-1.8
1,000,557	-		HMPREF1058_RS15140	0.37	-0.4
1,000,583	+		HMPREF1058_RS15140	0.38	+0.1
1,000,611	+		HMPREF1058_RS15140	0.38	+0.9
1,000,665	+		HMPREF1058_RS15140	0.40	-0.6
1,000,665	+		HMPREF1058_RS15140	0.40	-2.2
1,000,708	-		HMPREF1058_RS15140	0.41	+0.5
1,000,718	+		HMPREF1058_RS15140	0.41	+0.6
1,000,726	-		HMPREF1058_RS15140	0.42	+0.0
1,000,727	+		HMPREF1058_RS15140	0.42	-0.2
1,000,788	+		HMPREF1058_RS15140	0.43	-0.7
1,000,789	-		HMPREF1058_RS15140	0.44	+0.1
1,000,844	+		HMPREF1058_RS15140	0.45	-0.3
1,000,942	-		HMPREF1058_RS15140	0.48	-0.7
1,000,944	+		HMPREF1058_RS15140	0.48	+1.0
1,000,953	+		HMPREF1058_RS15140	0.48	-0.4
1,000,953	+		HMPREF1058_RS15140	0.48	+0.3
1,000,953	+		HMPREF1058_RS15140	0.48	+2.0
1,000,963	-		HMPREF1058_RS15140	0.48	-0.1
1,000,965	+		HMPREF1058_RS15140	0.49	+0.4
1,000,966	-		HMPREF1058_RS15140	0.49	+0.6
1,000,966	-		HMPREF1058_RS15140	0.49	-0.5
1,000,970	+		HMPREF1058_RS15140	0.49	-0.0
1,000,973	-		HMPREF1058_RS15140	0.49	-0.6
1,000,978	-		HMPREF1058_RS15140	0.49	+0.4
1,000,991	+		HMPREF1058_RS15140	0.49	-0.0
1,000,991	+		HMPREF1058_RS15140	0.49	+0.4
1,000,991	+		HMPREF1058_RS15140	0.49	+0.9
1,000,992	-		HMPREF1058_RS15140	0.49	-0.2
1,000,995	+		HMPREF1058_RS15140	0.49	+0.9
1,001,086	-		HMPREF1058_RS15140	0.52	+0.7
1,001,091	-		HMPREF1058_RS15140	0.52	+1.2
1,001,123	+		HMPREF1058_RS15140	0.53	+0.5
1,001,123	+		HMPREF1058_RS15140	0.53	+0.8
1,001,124	-		HMPREF1058_RS15140	0.53	+0.1
1,001,124	-		HMPREF1058_RS15140	0.53	+1.3
1,001,143	+		HMPREF1058_RS15140	0.54	+0.5
1,001,143	+		HMPREF1058_RS15140	0.54	-1.0
1,001,226	-		HMPREF1058_RS15140	0.56	+1.6
1,001,258	+		HMPREF1058_RS15140	0.57	+0.7
1,001,259	-		HMPREF1058_RS15140	0.57	+0.7
1,001,262	+		HMPREF1058_RS15140	0.57	+0.1
1,001,262	+		HMPREF1058_RS15140	0.57	-1.0
1,001,263	-		HMPREF1058_RS15140	0.57	-1.2
1,001,304	+		HMPREF1058_RS15140	0.58	+0.7
1,001,411	+		HMPREF1058_RS15140	0.61	-0.9
1,001,411	+		HMPREF1058_RS15140	0.61	-0.9
1,001,422	-		HMPREF1058_RS15140	0.62	-1.4
1,001,427	+		HMPREF1058_RS15140	0.62	+1.3
1,001,429	+		HMPREF1058_RS15140	0.62	-1.4
1,001,429	+		HMPREF1058_RS15140	0.62	+0.7
1,001,430	-		HMPREF1058_RS15140	0.62	+0.9
1,001,442	+		HMPREF1058_RS15140	0.62	-1.0
1,001,457	+		HMPREF1058_RS15140	0.63	+0.9
1,001,482	-		HMPREF1058_RS15140	0.63	+1.2
1,001,506	+		HMPREF1058_RS15140	0.64	-1.8
1,001,506	+		HMPREF1058_RS15140	0.64	+0.4
1,001,506	+		HMPREF1058_RS15140	0.64	+0.9
1,001,521	-		HMPREF1058_RS15140	0.64	+0.8
1,001,529	+		HMPREF1058_RS15140	0.65	-0.2
1,001,591	+		HMPREF1058_RS15140	0.66	-0.1
1,001,643	-		HMPREF1058_RS15140	0.68	+0.1
1,001,683	+		HMPREF1058_RS15140	0.69	-0.7
1,001,684	-		HMPREF1058_RS15140	0.69	+0.9
1,001,697	+		HMPREF1058_RS15140	0.69	+0.6
1,001,697	+		HMPREF1058_RS15140	0.69	+0.4
1,001,698	-		HMPREF1058_RS15140	0.70	-0.9
1,001,742	+		HMPREF1058_RS15140	0.71	-0.6
1,001,748	+		HMPREF1058_RS15140	0.71	-1.2
1,001,755	-		HMPREF1058_RS15140	0.71	-1.4
1,001,756	+		HMPREF1058_RS15140	0.71	-0.5
1,001,757	-		HMPREF1058_RS15140	0.71	-0.5
1,001,762	-		HMPREF1058_RS15140	0.71	+1.0
1,001,766	+		HMPREF1058_RS15140	0.71	+0.8
1,001,790	+		HMPREF1058_RS15140	0.72	-0.5
1,001,791	-		HMPREF1058_RS15140	0.72	+0.5
1,001,806	+		HMPREF1058_RS15140	0.73	-0.9
1,001,831	+		HMPREF1058_RS15140	0.73	+0.2
1,001,832	-		HMPREF1058_RS15140	0.73	-1.0
1,001,832	-		HMPREF1058_RS15140	0.73	+1.3
1,001,835	+		HMPREF1058_RS15140	0.73	-0.9
1,001,836	-		HMPREF1058_RS15140	0.73	+0.1
1,001,836	-		HMPREF1058_RS15140	0.73	-0.5
1,001,869	-		HMPREF1058_RS15140	0.74	+2.5
1,001,875	+		HMPREF1058_RS15140	0.75	+0.3
1,001,920	-		HMPREF1058_RS15140	0.76	+0.9
1,001,933	+		HMPREF1058_RS15140	0.76	+0.7
1,001,957	+		HMPREF1058_RS15140	0.77	-0.9
1,001,957	+		HMPREF1058_RS15140	0.77	-1.3
1,001,957	+		HMPREF1058_RS15140	0.77	-0.2
1,001,957	+		HMPREF1058_RS15140	0.77	+2.0
1,001,961	+		HMPREF1058_RS15140	0.77	-1.3
1,001,962	-		HMPREF1058_RS15140	0.77	-0.8
1,001,988	+		HMPREF1058_RS15140	0.78	+0.4
1,002,006	+		HMPREF1058_RS15140	0.78	-0.0
1,002,010	+		HMPREF1058_RS15140	0.78	-1.4
1,002,093	-		HMPREF1058_RS15140	0.81	-1.4
1,002,195	+		HMPREF1058_RS15140	0.84	-0.3
1,002,205	+		HMPREF1058_RS15140	0.84	-0.1
1,002,240	+		HMPREF1058_RS15140	0.85	-0.7
1,002,241	-		HMPREF1058_RS15140	0.85	-1.3
1,002,289	+		HMPREF1058_RS15140	0.86	+0.3
1,002,345	+		HMPREF1058_RS15140	0.88	-2.0
1,002,451	+				+0.1
1,002,452	-				-2.9
1,002,523	+				+0.2
1,002,645	+				+0.1
1,002,736	-				-0.7
1,002,842	+				-2.2
1,002,877	-				+0.6
1,002,974	+		HMPREF1058_RS15135	0.14	+0.0
1,002,978	+		HMPREF1058_RS15135	0.15	-0.4
1,002,978	+		HMPREF1058_RS15135	0.15	-0.3
1,002,979	-		HMPREF1058_RS15135	0.15	-0.0
1,002,983	-		HMPREF1058_RS15135	0.15	+1.3
1,002,990	-		HMPREF1058_RS15135	0.16	+2.2
1,003,074	-		HMPREF1058_RS15135	0.24	+0.7
1,003,158	+		HMPREF1058_RS15135	0.31	-1.0
1,003,197	+		HMPREF1058_RS15135	0.35	+0.1
1,003,197	+		HMPREF1058_RS15135	0.35	+0.2
1,003,197	+		HMPREF1058_RS15135	0.35	-0.4
1,003,197	+		HMPREF1058_RS15135	0.35	-0.8
1,003,197	+		HMPREF1058_RS15135	0.35	+1.0
1,003,198	-		HMPREF1058_RS15135	0.35	-0.5
1,003,198	-		HMPREF1058_RS15135	0.35	+1.2
1,003,199	+		HMPREF1058_RS15135	0.35	+0.5
1,003,201	+		HMPREF1058_RS15135	0.35	-4.2
1,003,202	-		HMPREF1058_RS15135	0.35	-0.3
1,003,207	-		HMPREF1058_RS15135	0.36	+0.3
1,003,225	+		HMPREF1058_RS15135	0.38	-0.4
1,003,227	+		HMPREF1058_RS15135	0.38	+1.1
1,003,227	+		HMPREF1058_RS15135	0.38	-1.2
1,003,276	+		HMPREF1058_RS15135	0.42	+1.7
1,003,276	+		HMPREF1058_RS15135	0.42	-1.0
1,003,277	-		HMPREF1058_RS15135	0.42	+0.4
1,003,277	-		HMPREF1058_RS15135	0.42	+1.1
1,003,278	+		HMPREF1058_RS15135	0.42	+1.0
1,003,291	-		HMPREF1058_RS15135	0.44	+1.9
1,003,496	+		HMPREF1058_RS15135	0.63	-0.5
1,003,497	-		HMPREF1058_RS15135	0.63	+2.5
1,003,518	+		HMPREF1058_RS15135	0.65	-0.1
1,003,519	-		HMPREF1058_RS15135	0.65	+1.6
1,003,522	-		HMPREF1058_RS15135	0.65	+0.5
1,003,528	+		HMPREF1058_RS15135	0.66	-0.0
1,003,545	+		HMPREF1058_RS15135	0.67	+0.8
1,003,745	+		HMPREF1058_RS15135	0.86	+1.2