Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05100 and HMPREF1058_RS05095 are separated by 213 nucleotides HMPREF1058_RS05095 and HMPREF1058_RS05090 are separated by 18 nucleotides
HMPREF1058_RS05100: HMPREF1058_RS05100 - IS1182 family transposase, at 246,552 to 247,127
_RS05100
HMPREF1058_RS05095: HMPREF1058_RS05095 - hypothetical protein, at 247,341 to 248,552
_RS05095
HMPREF1058_RS05090: HMPREF1058_RS05090 - WG repeat-containing protein, at 248,571 to 250,418
_RS05090
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 247.296 kb on + strand at 247.296 kb on + strand at 247.297 kb on - strand at 247.343 kb on - strand at 247.348 kb on - strand at 247.426 kb on + strand at 247.450 kb on + strand at 247.451 kb on - strand at 247.502 kb on + strand, within HMPREF1058_RS05095 at 247.504 kb on + strand, within HMPREF1058_RS05095 at 247.505 kb on - strand, within HMPREF1058_RS05095 at 247.588 kb on + strand, within HMPREF1058_RS05095 at 247.589 kb on - strand, within HMPREF1058_RS05095 at 247.663 kb on - strand, within HMPREF1058_RS05095 at 247.665 kb on - strand, within HMPREF1058_RS05095 at 247.725 kb on - strand, within HMPREF1058_RS05095 at 247.746 kb on - strand, within HMPREF1058_RS05095 at 247.757 kb on + strand, within HMPREF1058_RS05095 at 247.758 kb on - strand, within HMPREF1058_RS05095 at 247.774 kb on + strand, within HMPREF1058_RS05095 at 247.794 kb on - strand, within HMPREF1058_RS05095 at 247.843 kb on + strand, within HMPREF1058_RS05095 at 247.847 kb on - strand, within HMPREF1058_RS05095 at 247.900 kb on + strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.901 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.905 kb on - strand, within HMPREF1058_RS05095 at 247.911 kb on - strand, within HMPREF1058_RS05095 at 247.928 kb on + strand, within HMPREF1058_RS05095 at 247.930 kb on + strand, within HMPREF1058_RS05095 at 247.943 kb on + strand, within HMPREF1058_RS05095 at 247.973 kb on - strand, within HMPREF1058_RS05095 at 247.973 kb on - strand, within HMPREF1058_RS05095 at 247.990 kb on + strand, within HMPREF1058_RS05095 at 248.230 kb on + strand, within HMPREF1058_RS05095 at 248.254 kb on - strand, within HMPREF1058_RS05095 at 248.270 kb on + strand, within HMPREF1058_RS05095 at 248.335 kb on + strand, within HMPREF1058_RS05095 at 248.352 kb on + strand, within HMPREF1058_RS05095 at 248.353 kb on - strand, within HMPREF1058_RS05095 at 248.450 kb on + strand at 248.536 kb on - strand at 248.536 kb on - strand at 248.573 kb on - strand at 248.607 kb on + strand at 248.618 kb on + strand at 248.618 kb on + strand at 248.618 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.697 kb on - strand at 248.697 kb on - strand at 248.699 kb on - strand at 248.751 kb on + strand at 248.875 kb on + strand, within HMPREF1058_RS05090 at 248.926 kb on - strand, within HMPREF1058_RS05090 at 249.046 kb on + strand, within HMPREF1058_RS05090 at 249.047 kb on - strand, within HMPREF1058_RS05090 at 249.146 kb on + strand, within HMPREF1058_RS05090 at 249.146 kb on + strand, within HMPREF1058_RS05090 at 249.147 kb on - strand, within HMPREF1058_RS05090 at 249.148 kb on + strand, within HMPREF1058_RS05090 at 249.231 kb on - strand, within HMPREF1058_RS05090 at 249.278 kb on + strand, within HMPREF1058_RS05090 at 249.278 kb on + strand, within HMPREF1058_RS05090 at 249.282 kb on + strand, within HMPREF1058_RS05090 at 249.289 kb on + strand, within HMPREF1058_RS05090 at 249.397 kb on + strand, within HMPREF1058_RS05090 at 249.397 kb on + strand, within HMPREF1058_RS05090 at 249.404 kb on + strand, within HMPREF1058_RS05090 at 249.408 kb on + strand, within HMPREF1058_RS05090 at 249.443 kb on + strand, within HMPREF1058_RS05090 at 249.489 kb on - strand, within HMPREF1058_RS05090 at 249.492 kb on - strand, within HMPREF1058_RS05090 at 249.492 kb on - strand, within HMPREF1058_RS05090 at 249.494 kb on + strand, within HMPREF1058_RS05090 at 249.510 kb on + strand, within HMPREF1058_RS05090 at 249.510 kb on + strand, within HMPREF1058_RS05090 at 249.542 kb on - strand, within HMPREF1058_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 247,296 + -0.6 247,296 + -0.3 247,297 - -0.8 247,343 - -1.5 247,348 - -0.0 247,426 + -1.0 247,450 + -1.7 247,451 - +0.3 247,502 + HMPREF1058_RS05095 0.13 +1.0 247,504 + HMPREF1058_RS05095 0.13 -0.3 247,505 - HMPREF1058_RS05095 0.14 +0.0 247,588 + HMPREF1058_RS05095 0.20 +0.8 247,589 - HMPREF1058_RS05095 0.20 +0.2 247,663 - HMPREF1058_RS05095 0.27 -0.4 247,665 - HMPREF1058_RS05095 0.27 +1.0 247,725 - HMPREF1058_RS05095 0.32 -0.2 247,746 - HMPREF1058_RS05095 0.33 +0.4 247,757 + HMPREF1058_RS05095 0.34 +1.0 247,758 - HMPREF1058_RS05095 0.34 +0.9 247,774 + HMPREF1058_RS05095 0.36 -1.8 247,794 - HMPREF1058_RS05095 0.37 -1.3 247,843 + HMPREF1058_RS05095 0.41 +1.4 247,847 - HMPREF1058_RS05095 0.42 -2.2 247,900 + HMPREF1058_RS05095 0.46 -0.7 247,901 - HMPREF1058_RS05095 0.46 +1.0 247,901 - HMPREF1058_RS05095 0.46 +1.1 247,901 - HMPREF1058_RS05095 0.46 -0.7 247,905 - HMPREF1058_RS05095 0.47 +0.8 247,905 - HMPREF1058_RS05095 0.47 +0.5 247,905 - HMPREF1058_RS05095 0.47 -0.9 247,911 - HMPREF1058_RS05095 0.47 +0.6 247,928 + HMPREF1058_RS05095 0.48 -1.9 247,930 + HMPREF1058_RS05095 0.49 -0.4 247,943 + HMPREF1058_RS05095 0.50 -1.4 247,973 - HMPREF1058_RS05095 0.52 -0.1 247,973 - HMPREF1058_RS05095 0.52 -0.2 247,990 + HMPREF1058_RS05095 0.54 +0.1 248,230 + HMPREF1058_RS05095 0.73 -0.1 248,254 - HMPREF1058_RS05095 0.75 -1.3 248,270 + HMPREF1058_RS05095 0.77 -0.9 248,335 + HMPREF1058_RS05095 0.82 -0.7 248,352 + HMPREF1058_RS05095 0.83 -0.5 248,353 - HMPREF1058_RS05095 0.83 -3.0 248,450 + -0.1 248,536 - -0.1 248,536 - -0.3 248,573 - -0.2 248,607 + +0.1 248,618 + -0.4 248,618 + +1.7 248,618 + +1.6 248,696 + -0.9 248,696 + -0.3 248,696 + -0.8 248,697 - -1.6 248,697 - +0.2 248,699 - +0.6 248,751 + +0.5 248,875 + HMPREF1058_RS05090 0.16 -0.7 248,926 - HMPREF1058_RS05090 0.19 +0.4 249,046 + HMPREF1058_RS05090 0.26 -1.4 249,047 - HMPREF1058_RS05090 0.26 -0.3 249,146 + HMPREF1058_RS05090 0.31 -0.7 249,146 + HMPREF1058_RS05090 0.31 +0.6 249,147 - HMPREF1058_RS05090 0.31 +1.0 249,148 + HMPREF1058_RS05090 0.31 -1.7 249,231 - HMPREF1058_RS05090 0.36 -0.5 249,278 + HMPREF1058_RS05090 0.38 +0.2 249,278 + HMPREF1058_RS05090 0.38 -1.5 249,282 + HMPREF1058_RS05090 0.38 -3.1 249,289 + HMPREF1058_RS05090 0.39 +0.9 249,397 + HMPREF1058_RS05090 0.45 -1.8 249,397 + HMPREF1058_RS05090 0.45 +0.7 249,404 + HMPREF1058_RS05090 0.45 -0.1 249,408 + HMPREF1058_RS05090 0.45 -0.1 249,443 + HMPREF1058_RS05090 0.47 -1.4 249,489 - HMPREF1058_RS05090 0.50 -1.1 249,492 - HMPREF1058_RS05090 0.50 -1.2 249,492 - HMPREF1058_RS05090 0.50 -0.1 249,494 + HMPREF1058_RS05090 0.50 -0.9 249,510 + HMPREF1058_RS05090 0.51 -0.7 249,510 + HMPREF1058_RS05090 0.51 -1.0 249,542 - HMPREF1058_RS05090 0.53 +2.5
Or see this region's nucleotide sequence