Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotides HMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotides HMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotides
HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282
_RS03800
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592
_RS03790
HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443
_RS03785
Position (kb) 184
185
186 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 183.510 kb on - strand, within HMPREF1058_RS03800 at 183.528 kb on - strand, within HMPREF1058_RS03800 at 183.536 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.664 kb on + strand, within HMPREF1058_RS03800 at 183.786 kb on + strand, within HMPREF1058_RS03800 at 183.891 kb on + strand, within HMPREF1058_RS03800 at 183.892 kb on - strand, within HMPREF1058_RS03800 at 183.940 kb on + strand, within HMPREF1058_RS03800 at 184.219 kb on - strand at 184.280 kb on + strand at 184.300 kb on + strand at 184.303 kb on - strand at 184.309 kb on - strand at 184.309 kb on - strand at 184.387 kb on + strand at 184.387 kb on + strand at 184.577 kb on + strand at 184.579 kb on + strand at 184.579 kb on + strand at 184.580 kb on - strand at 184.580 kb on - strand at 184.655 kb on - strand, within HMPREF1058_RS03795 at 184.673 kb on - strand, within HMPREF1058_RS03795 at 184.693 kb on - strand, within HMPREF1058_RS03795 at 184.782 kb on + strand, within HMPREF1058_RS03795 at 184.817 kb on - strand, within HMPREF1058_RS03795 at 184.840 kb on + strand, within HMPREF1058_RS03795 at 184.841 kb on - strand, within HMPREF1058_RS03795 at 184.863 kb on + strand, within HMPREF1058_RS03795 at 185.011 kb on - strand, within HMPREF1058_RS03795 at 185.014 kb on - strand, within HMPREF1058_RS03795 at 185.094 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.180 kb on - strand, within HMPREF1058_RS03795 at 185.388 kb on - strand, within HMPREF1058_RS03795 at 185.423 kb on + strand, within HMPREF1058_RS03795 at 185.479 kb on + strand, within HMPREF1058_RS03795 at 185.553 kb on + strand, within HMPREF1058_RS03795 at 185.558 kb on - strand, within HMPREF1058_RS03795 at 185.582 kb on - strand, within HMPREF1058_RS03795 at 185.662 kb on + strand, within HMPREF1058_RS03795 at 185.841 kb on + strand at 185.841 kb on + strand at 185.854 kb on + strand at 185.855 kb on - strand at 185.899 kb on - strand at 185.911 kb on + strand at 185.912 kb on - strand at 185.944 kb on + strand at 185.945 kb on - strand, within HMPREF1058_RS03790 at 185.948 kb on - strand, within HMPREF1058_RS03790 at 186.025 kb on + strand, within HMPREF1058_RS03790 at 186.068 kb on - strand, within HMPREF1058_RS03790 at 186.161 kb on - strand, within HMPREF1058_RS03790 at 186.181 kb on - strand, within HMPREF1058_RS03790 at 186.276 kb on + strand, within HMPREF1058_RS03790 at 186.304 kb on - strand, within HMPREF1058_RS03790 at 186.312 kb on - strand, within HMPREF1058_RS03790 at 186.320 kb on - strand, within HMPREF1058_RS03790 at 186.410 kb on - strand, within HMPREF1058_RS03790 at 186.432 kb on + strand, within HMPREF1058_RS03790 at 186.433 kb on - strand, within HMPREF1058_RS03790 at 186.465 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.534 kb on + strand at 186.535 kb on - strand at 186.535 kb on - strand at 186.536 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.542 kb on + strand at 186.542 kb on + strand at 186.610 kb on + strand at 186.611 kb on - strand at 186.662 kb on + strand at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.807 kb on + strand, within HMPREF1058_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 183,510 - HMPREF1058_RS03800 0.40 -0.9 183,528 - HMPREF1058_RS03800 0.41 -1.7 183,536 - HMPREF1058_RS03800 0.42 -0.1 183,636 - HMPREF1058_RS03800 0.49 -5.8 183,636 - HMPREF1058_RS03800 0.49 -2.3 183,664 + HMPREF1058_RS03800 0.52 -2.1 183,786 + HMPREF1058_RS03800 0.61 -2.7 183,891 + HMPREF1058_RS03800 0.69 -3.7 183,892 - HMPREF1058_RS03800 0.69 -3.6 183,940 + HMPREF1058_RS03800 0.73 -1.3 184,219 - -2.9 184,280 + +0.3 184,300 + -0.3 184,303 - -0.3 184,309 - +1.3 184,309 - +0.3 184,387 + -0.5 184,387 + -0.6 184,577 + -1.0 184,579 + -0.4 184,579 + -0.5 184,580 - +0.0 184,580 - -1.3 184,655 - HMPREF1058_RS03795 0.13 -3.4 184,673 - HMPREF1058_RS03795 0.14 +0.1 184,693 - HMPREF1058_RS03795 0.16 +1.2 184,782 + HMPREF1058_RS03795 0.22 +0.1 184,817 - HMPREF1058_RS03795 0.25 +0.3 184,840 + HMPREF1058_RS03795 0.27 -0.7 184,841 - HMPREF1058_RS03795 0.27 -0.9 184,863 + HMPREF1058_RS03795 0.28 -1.2 185,011 - HMPREF1058_RS03795 0.39 -2.5 185,014 - HMPREF1058_RS03795 0.40 -3.1 185,094 + HMPREF1058_RS03795 0.46 -0.9 185,179 + HMPREF1058_RS03795 0.52 -0.2 185,179 + HMPREF1058_RS03795 0.52 +0.1 185,179 + HMPREF1058_RS03795 0.52 +0.9 185,179 + HMPREF1058_RS03795 0.52 +1.8 185,180 - HMPREF1058_RS03795 0.52 -0.8 185,388 - HMPREF1058_RS03795 0.67 -0.9 185,423 + HMPREF1058_RS03795 0.70 -1.2 185,479 + HMPREF1058_RS03795 0.74 -3.3 185,553 + HMPREF1058_RS03795 0.80 -0.8 185,558 - HMPREF1058_RS03795 0.80 +0.2 185,582 - HMPREF1058_RS03795 0.82 -1.7 185,662 + HMPREF1058_RS03795 0.88 -1.5 185,841 + -2.2 185,841 + -0.4 185,854 + -1.7 185,855 - -0.5 185,899 - -0.7 185,911 + -0.3 185,912 - +0.5 185,944 + +0.7 185,945 - HMPREF1058_RS03790 0.10 -1.0 185,948 - HMPREF1058_RS03790 0.10 +0.2 186,025 + HMPREF1058_RS03790 0.21 -1.3 186,068 - HMPREF1058_RS03790 0.27 -0.2 186,161 - HMPREF1058_RS03790 0.40 -0.9 186,181 - HMPREF1058_RS03790 0.43 -0.4 186,276 + HMPREF1058_RS03790 0.56 -0.6 186,304 - HMPREF1058_RS03790 0.60 -1.3 186,312 - HMPREF1058_RS03790 0.61 -0.2 186,320 - HMPREF1058_RS03790 0.62 -0.2 186,410 - HMPREF1058_RS03790 0.75 +0.3 186,432 + HMPREF1058_RS03790 0.78 +0.4 186,433 - HMPREF1058_RS03790 0.78 +0.7 186,465 + HMPREF1058_RS03790 0.82 +0.5 186,487 + HMPREF1058_RS03790 0.85 -0.2 186,487 + HMPREF1058_RS03790 0.85 +0.3 186,534 + -1.2 186,535 - +1.1 186,535 - -0.2 186,536 + +0.0 186,538 + +0.5 186,538 + +0.7 186,538 + -0.3 186,538 + -0.5 186,538 + +0.0 186,538 + -0.7 186,539 - -3.0 186,539 - -0.1 186,539 - -0.3 186,539 - -0.2 186,542 + -0.9 186,542 + -0.7 186,610 + -2.5 186,611 - -1.0 186,662 + +0.3 186,807 + HMPREF1058_RS03785 0.12 -0.9 186,807 + HMPREF1058_RS03785 0.12 -0.4
Or see this region's nucleotide sequence