Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_025100

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
5,452,670	+		TX73_025095	0.44	+1.3
5,452,670	+		TX73_025095	0.44	+0.1
5,452,678	+		TX73_025095	0.44	-1.7
5,452,691	-		TX73_025095	0.45	+1.8
5,452,691	-		TX73_025095	0.45	+1.6
5,452,696	-		TX73_025095	0.46	+1.0
5,452,702	+		TX73_025095	0.46	+1.4
5,452,718	-		TX73_025095	0.47	+0.0
5,452,729	+		TX73_025095	0.48	+0.7
5,452,745	+		TX73_025095	0.49	+1.6
5,452,774	+		TX73_025095	0.51	+0.2
5,452,777	-		TX73_025095	0.51	-0.1
5,452,779	+		TX73_025095	0.51	-0.0
5,452,782	-		TX73_025095	0.51	-1.1
5,452,787	-		TX73_025095	0.51	+0.1
5,452,803	-		TX73_025095	0.52	+0.7
5,452,814	-		TX73_025095	0.53	-0.4
5,452,832	-		TX73_025095	0.54	+1.1
5,452,837	-		TX73_025095	0.55	-1.1
5,452,954	+		TX73_025095	0.62	-1.9
5,452,990	-		TX73_025095	0.64	-2.5
5,453,087	+		TX73_025095	0.70	+0.7
5,453,087	+		TX73_025095	0.70	+0.2
5,453,095	-		TX73_025095	0.71	-1.9
5,453,112	-		TX73_025095	0.72	-1.7
5,453,114	+		TX73_025095	0.72	+0.8
5,453,129	-		TX73_025095	0.73	-0.2
5,453,135	-		TX73_025095	0.73	+0.4
5,453,155	+		TX73_025095	0.75	+0.9
5,453,246	+		TX73_025095	0.80	+2.3
5,453,319	-		TX73_025095	0.85	+0.3
5,453,459	+				+1.1
5,453,459	+				+0.4
5,453,459	+				-0.4
5,453,467	-				+0.5
5,453,527	+				+0.4
5,453,572	-				-1.0
5,453,574	+				-0.1
5,453,582	-				+0.1
5,453,582	-				+0.5
5,453,582	-				+1.9
5,453,582	-				-2.4
5,453,582	-				+0.3
5,453,667	-				-0.2
5,453,860	+		TX73_025100	0.18	-2.1
5,453,887	+		TX73_025100	0.20	+0.0
5,453,895	-		TX73_025100	0.21	-1.0
5,453,895	-		TX73_025100	0.21	+0.2
5,453,897	+		TX73_025100	0.21	-1.0
5,453,902	+		TX73_025100	0.21	+0.1
5,453,941	-		TX73_025100	0.25	+1.3
5,453,948	-		TX73_025100	0.26	-0.2
5,453,950	+		TX73_025100	0.26	+0.8
5,453,979	+		TX73_025100	0.28	+1.1
5,453,997	+		TX73_025100	0.30	+0.5
5,454,044	-		TX73_025100	0.34	+0.0
5,454,044	-		TX73_025100	0.34	-3.3
5,454,054	+		TX73_025100	0.35	+1.0
5,454,054	+		TX73_025100	0.35	-2.1
5,454,054	+		TX73_025100	0.35	-1.6
5,454,056	+		TX73_025100	0.35	-1.9
5,454,056	+		TX73_025100	0.35	-1.2
5,454,062	-		TX73_025100	0.36	-0.3
5,454,064	-		TX73_025100	0.36	-1.2
5,454,074	+		TX73_025100	0.37	-0.5
5,454,082	-		TX73_025100	0.38	+1.2
5,454,170	-		TX73_025100	0.46	-0.9
5,454,270	+		TX73_025100	0.55	-1.9
5,454,276	+		TX73_025100	0.55	-0.8
5,454,319	+		TX73_025100	0.59	-3.0
5,454,327	-		TX73_025100	0.60	+1.1
5,454,362	-		TX73_025100	0.63	+1.2
5,454,370	-		TX73_025100	0.64	-1.6
5,454,385	-		TX73_025100	0.65	-1.1
5,454,404	-		TX73_025100	0.67	-2.5
5,454,406	-		TX73_025100	0.67	-0.1
5,454,415	+		TX73_025100	0.68	-1.5
5,454,444	+		TX73_025100	0.70	-0.4
5,454,453	+		TX73_025100	0.71	-1.0
5,454,458	+		TX73_025100	0.72	+0.3
5,454,466	-		TX73_025100	0.72	+0.6
5,454,466	-		TX73_025100	0.72	-0.6
5,454,466	-		TX73_025100	0.72	-0.8
5,454,471	-		TX73_025100	0.73	+0.6
5,454,492	+		TX73_025100	0.75	+0.1
5,454,514	+		TX73_025100	0.77	-1.8
5,454,522	-		TX73_025100	0.78	+0.3
5,454,527	+		TX73_025100	0.78	-3.1
5,454,577	-		TX73_025100	0.83	-0.1
5,454,610	+		TX73_025100	0.86	+1.9
5,454,642	+		TX73_025100	0.88	+0.9
5,454,642	+		TX73_025100	0.88	-0.1
5,454,642	+		TX73_025100	0.88	-0.6
5,454,642	+		TX73_025100	0.88	+0.6
5,454,642	+		TX73_025100	0.88	-0.3
5,454,642	+		TX73_025100	0.88	-0.7
5,454,643	-		TX73_025100	0.88	-2.5
5,454,644	+		TX73_025100	0.89	+0.0
5,454,650	-		TX73_025100	0.89	+1.9
5,454,650	-		TX73_025100	0.89	-2.0
5,454,660	-				-2.4
5,454,668	-				-2.7
5,454,670	-				-3.1
5,454,670	-				-1.4
5,454,730	+				-0.4
5,454,730	+				-1.6
5,454,730	+				-1.6
5,454,735	+				+1.1
5,454,738	-				+0.6
5,454,738	-				+0.5
5,454,743	-				-0.3
5,454,767	-				+0.5
5,454,843	-				-1.1
5,454,858	+				+1.6
5,454,858	+				-2.6
5,454,926	-				+1.5
5,454,934	+				-1.0
5,454,936	+				-1.7
5,454,942	-				-0.8
5,454,944	-				+1.5
5,454,944	-				-0.1
5,454,964	-				+1.0
5,454,969	+				-1.5
5,454,981	+				+0.0
5,455,012	+				-1.1
5,455,020	-				+1.5
5,455,027	-		TX73_025105	0.11	+0.4
5,455,041	-		TX73_025105	0.15	-0.7
5,455,075	+		TX73_025105	0.24	-1.2
5,455,080	-		TX73_025105	0.25	-2.6
5,455,092	-		TX73_025105	0.28	-0.6
5,455,124	+		TX73_025105	0.37	+2.6
5,455,124	+		TX73_025105	0.37	-3.1
5,455,132	-		TX73_025105	0.39	-1.6
5,455,137	+		TX73_025105	0.41	+0.2
5,455,137	-		TX73_025105	0.41	-2.7
5,455,140	-		TX73_025105	0.41	-0.4
5,455,145	-		TX73_025105	0.43	-1.0
5,455,184	-		TX73_025105	0.53	-1.1
5,455,237	+		TX73_025105	0.68	-1.1
5,455,245	-		TX73_025105	0.70	-1.6
5,455,374	+				+0.0
5,455,389	-				+1.4
5,455,403	-				-0.1
5,455,410	-				+1.2
5,455,429	-				+1.5
5,455,512	+		TX73_025110	0.15	+1.4
5,455,569	+		TX73_025110	0.24	+1.2
5,455,571	+		TX73_025110	0.24	+1.4
5,455,571	+		TX73_025110	0.24	-1.8
5,455,579	-		TX73_025110	0.25	+0.2
5,455,594	+		TX73_025110	0.27	-1.6
5,455,594	-		TX73_025110	0.27	-2.1
5,455,602	-		TX73_025110	0.28	-2.0
5,455,624	-		TX73_025110	0.32	+1.0
5,455,634	+		TX73_025110	0.33	+0.5
5,455,662	+		TX73_025110	0.37	-2.3
5,455,671	-		TX73_025110	0.39	+1.0
5,455,687	+		TX73_025110	0.41	+1.9
5,455,708	-		TX73_025110	0.44	-2.2
5,455,718	+		TX73_025110	0.46	-2.8
5,455,723	+		TX73_025110	0.46	+0.3
5,455,723	+		TX73_025110	0.46	-2.7
5,455,723	+		TX73_025110	0.46	+0.2
5,455,723	+		TX73_025110	0.46	+0.5
5,455,726	-		TX73_025110	0.47	+1.4
5,455,731	-		TX73_025110	0.48	-2.3
5,455,731	-		TX73_025110	0.48	-0.7
5,455,736	-		TX73_025110	0.48	+1.4
5,455,736	-		TX73_025110	0.48	+0.8
5,455,738	-		TX73_025110	0.49	+1.5
5,455,762	-		TX73_025110	0.52	+0.4