Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_021305

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
4,652,459	+		TX73_021295	0.86	+1.9
4,652,460	-		TX73_021295	0.87	-1.0
4,652,516	+		TX73_021295	0.90	-0.5
4,652,524	-				+0.5
4,652,526	+				+1.7
4,652,534	-				-1.0
4,652,565	+				-1.0
4,652,601	+				+0.3
4,652,667	+				+2.3
4,652,705	+				+1.5
4,652,714	+				-2.1
4,652,720	+				+0.3
4,652,731	+				+2.9
4,652,739	-				-0.1
4,652,772	+				+0.5
4,652,814	+				-1.7
4,652,866	+				+0.2
4,652,866	+				+0.6
4,652,874	-		TX73_021300	0.11	+1.2
4,652,876	+		TX73_021300	0.11	+0.7
4,652,876	+		TX73_021300	0.11	+0.0
4,652,884	-		TX73_021300	0.13	-1.2
4,652,958	+		TX73_021300	0.31	-1.4
4,652,958	+		TX73_021300	0.31	-1.3
4,652,958	+		TX73_021300	0.31	-1.3
4,652,993	+		TX73_021300	0.39	-1.2
4,653,003	+		TX73_021300	0.41	-1.9
4,653,003	+		TX73_021300	0.41	-0.6
4,653,022	+		TX73_021300	0.46	-1.6
4,653,030	-		TX73_021300	0.48	-2.0
4,653,081	+		TX73_021300	0.60	+0.5
4,653,081	+		TX73_021300	0.60	-0.1
4,653,081	+		TX73_021300	0.60	+0.7
4,653,081	+		TX73_021300	0.60	-3.2
4,653,081	+		TX73_021300	0.60	+0.1
4,653,089	-		TX73_021300	0.62	+1.0
4,653,089	-		TX73_021300	0.62	-0.4
4,653,089	-		TX73_021300	0.62	+0.1
4,653,089	-		TX73_021300	0.62	-2.5
4,653,089	-		TX73_021300	0.62	+0.6
4,653,089	-		TX73_021300	0.62	+0.3
4,653,089	-		TX73_021300	0.62	-1.6
4,653,131	+		TX73_021300	0.72	+0.5
4,653,131	+		TX73_021300	0.72	-1.6
4,653,131	+		TX73_021300	0.72	-2.2
4,653,157	+		TX73_021300	0.78	-1.9
4,653,172	+		TX73_021300	0.81	-0.3
4,653,172	+		TX73_021300	0.81	+1.0
4,653,180	-		TX73_021300	0.83	-2.1
4,653,182	+		TX73_021300	0.84	-0.4
4,653,192	-		TX73_021300	0.86	+1.4
4,653,194	+		TX73_021300	0.87	+0.0
4,653,202	-		TX73_021300	0.88	-1.2
4,653,233	-				-2.0
4,653,233	-				+1.3
4,653,248	-				-0.6
4,653,250	-				-1.9
4,653,263	+				-0.3
4,653,263	+				+0.3
4,653,271	-				+1.4
4,653,274	-				-0.4
4,653,276	-				-0.1
4,653,311	-				-0.8
4,653,367	+				+2.6
4,653,367	+				-0.3
4,653,367	-				+1.5
4,653,377	+				+0.1
4,653,403	+				-1.5
4,653,411	-				-0.9
4,653,480	+				-0.9
4,653,488	-				+1.2
4,653,495	+				+0.4
4,653,513	-				-0.5
4,653,542	-				+0.2
4,653,553	+				+0.9
4,653,561	-				-2.0
4,653,561	-				+0.3
4,653,570	-				-1.0
4,653,571	+				+0.7
4,653,591	+				-1.7
4,653,591	+				-2.0
4,653,640	+				+0.3
4,653,663	+		TX73_021305	0.11	-1.0
4,653,722	-		TX73_021305	0.13	-1.8
4,653,727	+		TX73_021305	0.14	-2.7
4,653,737	+		TX73_021305	0.14	-1.0
4,653,739	+		TX73_021305	0.14	+1.3
4,653,745	-		TX73_021305	0.15	-1.6
4,653,779	+		TX73_021305	0.16	+0.3
4,653,785	+		TX73_021305	0.16	+0.9
4,653,785	+		TX73_021305	0.16	-1.1
4,653,785	+		TX73_021305	0.16	+0.7
4,653,798	-		TX73_021305	0.17	-2.4
4,653,839	+		TX73_021305	0.19	-0.9
4,653,849	+		TX73_021305	0.19	-0.8
4,653,849	+		TX73_021305	0.19	+0.5
4,653,849	+		TX73_021305	0.19	+1.6
4,653,876	-		TX73_021305	0.20	+0.2
4,653,886	-		TX73_021305	0.21	+1.1
4,653,905	-		TX73_021305	0.22	+1.6
4,653,914	+		TX73_021305	0.22	+1.3
4,653,942	+		TX73_021305	0.23	+1.0
4,653,965	+		TX73_021305	0.25	+0.4
4,653,970	+		TX73_021305	0.25	+0.6
4,653,989	+		TX73_021305	0.26	-1.8
4,654,000	-		TX73_021305	0.26	+1.1
4,654,010	+		TX73_021305	0.27	+0.1
4,654,010	+		TX73_021305	0.27	-2.4
4,654,063	+		TX73_021305	0.29	+2.2
4,654,071	-		TX73_021305	0.29	+0.6
4,654,071	-		TX73_021305	0.29	+0.0
4,654,082	+		TX73_021305	0.30	+0.4
4,654,083	-		TX73_021305	0.30	-2.0
4,654,090	-		TX73_021305	0.30	-2.1
4,654,090	-		TX73_021305	0.30	-0.2
4,654,136	-		TX73_021305	0.32	+1.3
4,654,136	-		TX73_021305	0.32	+1.0
4,654,177	+		TX73_021305	0.34	+1.5
4,654,177	+		TX73_021305	0.34	+1.1
4,654,184	+		TX73_021305	0.34	+0.3
4,654,234	+		TX73_021305	0.37	+0.4
4,654,234	+		TX73_021305	0.37	+1.4
4,654,248	-		TX73_021305	0.37	-1.1
4,654,257	+		TX73_021305	0.38	-1.2
4,654,305	+		TX73_021305	0.40	+1.1
4,654,324	+		TX73_021305	0.41	+0.6
4,654,324	+		TX73_021305	0.41	+0.5
4,654,327	-		TX73_021305	0.41	+2.2
4,654,332	-		TX73_021305	0.41	-2.1
4,654,332	-		TX73_021305	0.41	+1.1
4,654,332	-		TX73_021305	0.41	+1.2
4,654,332	-		TX73_021305	0.41	-1.4
4,654,340	+		TX73_021305	0.42	+1.4
4,654,340	+		TX73_021305	0.42	+0.1
4,654,348	-		TX73_021305	0.42	+0.5
4,654,392	-		TX73_021305	0.44	-1.3
4,654,403	+		TX73_021305	0.44	-0.5
4,654,422	+		TX73_021305	0.45	-0.7
4,654,487	+		TX73_021305	0.48	-1.5
4,654,557	+		TX73_021305	0.51	-0.3
4,654,602	+		TX73_021305	0.53	-0.2
4,654,689	+		TX73_021305	0.57	+0.3
4,654,728	+		TX73_021305	0.59	-1.9
4,654,763	-		TX73_021305	0.61	+2.1
4,654,778	+		TX73_021305	0.61	+1.5
4,654,786	-		TX73_021305	0.62	-1.5
4,654,796	-		TX73_021305	0.62	-1.1
4,654,834	-		TX73_021305	0.64	-2.0
4,654,915	-		TX73_021305	0.68	-1.9
4,654,923	+		TX73_021305	0.68	+0.4
4,655,132	+		TX73_021305	0.78	+0.8
4,655,202	-		TX73_021305	0.81	+1.9
4,655,245	+		TX73_021305	0.83	-1.1
4,655,253	-		TX73_021305	0.83	-2.2
4,655,441	+				+0.8
4,655,445	-				-1.1
4,655,445	-				-1.1
4,655,452	+				+1.0
4,655,467	-				-0.5
4,655,514	+				-1.2
4,655,516	+				+0.5
4,655,537	+				-3.0
4,655,579	-				-2.2
4,655,706	+				+2.0
4,655,733	-				+2.7
4,655,769	-				-0.4
4,655,799	+				-2.0
4,655,882	-				+1.2
4,655,887	-				+1.2
4,655,955	-				+0.6
4,655,964	+				-1.3
4,655,972	-				-1.1
4,655,977	+				+1.7
4,656,071	-				+0.8
4,656,084	+				-0.4
4,656,144	-				-0.3
4,656,237	-				-0.5
4,656,245	-				+0.5
4,656,248	-				-1.9
4,656,290	-				+1.0
4,656,308	+				-0.5
4,656,329	+				+1.0
4,656,412	+				-1.5
4,656,420	-				+2.5
4,656,420	-				+0.9
4,656,438	+				+0.7
4,656,443	+				+0.3
4,656,461	+		TX73_021310	0.10	-0.6
4,656,476	+		TX73_021310	0.12	-0.6
4,656,476	+		TX73_021310	0.12	+1.9
4,656,476	+		TX73_021310	0.12	+0.1
4,656,476	+		TX73_021310	0.12	-1.1
4,656,476	+		TX73_021310	0.12	-0.8
4,656,476	+		TX73_021310	0.12	-0.6
4,656,476	+		TX73_021310	0.12	-1.6
4,656,476	+		TX73_021310	0.12	+1.6
4,656,476	+		TX73_021310	0.12	-0.9
4,656,476	+		TX73_021310	0.12	-1.0
4,656,476	+		TX73_021310	0.12	+0.1
4,656,476	+		TX73_021310	0.12	-1.3
4,656,484	-		TX73_021310	0.13	+1.9
4,656,484	-		TX73_021310	0.13	-0.5
4,656,484	-		TX73_021310	0.13	+2.0
4,656,484	-		TX73_021310	0.13	-0.6
4,656,484	-		TX73_021310	0.13	-2.1
4,656,484	-		TX73_021310	0.13	+1.3
4,656,484	-		TX73_021310	0.13	-2.1
4,656,484	-		TX73_021310	0.13	+0.0
4,656,495	-		TX73_021310	0.15	-1.9
4,656,605	+		TX73_021310	0.28	+0.4
4,656,621	+		TX73_021310	0.30	-2.0