Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019985

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
4,358,275	-		TX73_019975	0.50	-2.5
4,358,283	+		TX73_019975	0.50	-0.9
4,358,283	+		TX73_019975	0.50	+0.5
4,358,291	-		TX73_019975	0.51	+1.0
4,358,316	-		TX73_019975	0.54	-0.1
4,358,321	+		TX73_019975	0.55	+0.8
4,358,336	+		TX73_019975	0.56	-2.2
4,358,339	+		TX73_019975	0.57	-0.3
4,358,378	+		TX73_019975	0.61	-0.7
4,358,401	+		TX73_019975	0.63	-1.9
4,358,418	+		TX73_019975	0.65	-0.4
4,358,426	-		TX73_019975	0.66	+0.1
4,358,436	+		TX73_019975	0.67	-1.9
4,358,488	+		TX73_019975	0.73	-0.4
4,358,527	+		TX73_019975	0.77	-0.5
4,358,537	-		TX73_019975	0.78	+0.3
4,358,540	+		TX73_019975	0.78	-3.2
4,358,545	-		TX73_019975	0.79	-0.1
4,358,565	-		TX73_019975	0.81	-2.1
4,358,574	+		TX73_019975	0.82	-0.6
4,358,619	-		TX73_019975	0.87	-1.6
4,358,627	+		TX73_019975	0.88	+0.0
4,358,647	+				-0.8
4,358,729	-				-2.5
4,358,730	+				+0.4
4,358,730	+				+0.0
4,358,731	+				+0.5
4,358,731	+				-1.2
4,358,731	+				-0.2
4,358,731	+				+0.0
4,358,737	+				-0.5
4,358,738	-				-0.3
4,358,739	-				+0.1
4,358,739	-				-1.0
4,358,739	-				-2.0
4,358,739	-				-0.8
4,358,739	-				-0.5
4,358,742	+				+0.7
4,358,764	+				+1.0
4,358,772	+				-0.6
4,358,772	-				-0.9
4,358,774	+				+0.3
4,358,778	+		TX73_019980	0.11	-1.1
4,358,813	-		TX73_019980	0.20	-0.8
4,358,848	-		TX73_019980	0.30	-0.9
4,358,851	+		TX73_019980	0.31	-2.2
4,358,851	+		TX73_019980	0.31	+0.4
4,358,851	+		TX73_019980	0.31	+0.2
4,358,851	+		TX73_019980	0.31	+0.8
4,358,851	+		TX73_019980	0.31	+1.7
4,358,859	-		TX73_019980	0.33	-2.2
4,358,859	-		TX73_019980	0.33	+1.5
4,358,859	-		TX73_019980	0.33	+2.3
4,358,859	-		TX73_019980	0.33	-1.9
4,358,859	-		TX73_019980	0.33	-0.1
4,358,873	+		TX73_019980	0.37	+0.8
4,358,906	-		TX73_019980	0.46	-0.4
4,358,917	-		TX73_019980	0.49	-0.2
4,358,917	-		TX73_019980	0.49	-1.9
4,358,978	+		TX73_019980	0.66	+1.5
4,358,981	-		TX73_019980	0.67	+2.8
4,358,988	+		TX73_019980	0.69	-2.9
4,358,988	+		TX73_019980	0.69	-1.5
4,358,988	+		TX73_019980	0.69	-1.9
4,358,996	-		TX73_019980	0.71	-1.3
4,358,996	-		TX73_019980	0.71	-1.4
4,358,996	-		TX73_019980	0.71	+0.6
4,358,996	-		TX73_019980	0.71	-1.6
4,359,007	-		TX73_019980	0.74	+0.1
4,359,022	+		TX73_019980	0.78	+0.8
4,359,047	+		TX73_019980	0.85	-0.2
4,359,047	+		TX73_019980	0.85	-1.0
4,359,047	+		TX73_019980	0.85	-0.4
4,359,055	-		TX73_019980	0.88	+1.2
4,359,055	-		TX73_019980	0.88	-0.9
4,359,060	-		TX73_019980	0.89	-0.7
4,359,071	+				+1.4
4,359,077	-				-0.2
4,359,079	+				-1.1
4,359,094	+				-0.5
4,359,102	-				-1.7
4,359,147	-				-1.6
4,359,158	-				-1.6
4,359,179	-				-0.9
4,359,208	-				+2.9
4,359,217	-				-0.1
4,359,250	+				+0.5
4,359,252	+				+0.3
4,359,273	+				+0.3
4,359,329	+				-2.7
4,359,330	+				+0.2
4,359,338	-				+0.9
4,359,343	-				+0.9
4,359,345	+				-0.3
4,359,348	-				+1.2
4,359,352	-				-0.6
4,359,362	+				-0.2
4,359,375	-				+0.4
4,359,407	-				+0.3
4,359,416	+				+1.2
4,359,437	+				-0.7
4,359,437	-				-1.1
4,359,444	+				-0.0
4,359,444	+				+1.3
4,359,452	-				-0.8
4,359,452	-				+0.7
4,359,452	-				-0.9
4,359,452	-				-0.3
4,359,462	-		TX73_019985	0.10	-2.9
4,359,474	-		TX73_019985	0.11	-0.2
4,359,503	-		TX73_019985	0.12	-2.4
4,359,536	-		TX73_019985	0.14	-2.5
4,359,611	-		TX73_019985	0.18	-1.8
4,359,633	+		TX73_019985	0.19	+0.1
4,359,633	+		TX73_019985	0.19	-0.3
4,359,638	+		TX73_019985	0.19	+0.3
4,359,638	+		TX73_019985	0.19	-0.1
4,359,643	+		TX73_019985	0.20	-1.3
4,359,646	-		TX73_019985	0.20	-1.6
4,359,646	-		TX73_019985	0.20	-0.3
4,359,646	-		TX73_019985	0.20	+0.2
4,359,691	+		TX73_019985	0.22	+1.4
4,359,717	-		TX73_019985	0.24	-1.1
4,359,790	+		TX73_019985	0.27	-1.6
4,359,833	+		TX73_019985	0.30	-2.2
4,359,855	-		TX73_019985	0.31	+0.8
4,359,909	+		TX73_019985	0.34	+0.6
4,359,933	-		TX73_019985	0.35	+0.6
4,360,064	+		TX73_019985	0.42	+0.5
4,360,072	-		TX73_019985	0.42	-0.5
4,360,072	-		TX73_019985	0.42	-2.0
4,360,087	-		TX73_019985	0.43	+0.4
4,360,093	-		TX73_019985	0.43	+1.0
4,360,167	+		TX73_019985	0.47	+0.3
4,360,221	+		TX73_019985	0.50	+0.5
4,360,247	+		TX73_019985	0.51	+0.4
4,360,283	-		TX73_019985	0.53	+0.5
4,360,415	-		TX73_019985	0.60	+1.5
4,360,593	+		TX73_019985	0.69	-0.9
4,360,603	-		TX73_019985	0.70	+2.1
4,360,608	+		TX73_019985	0.70	+0.1
4,360,629	-		TX73_019985	0.71	-1.7
4,360,646	+		TX73_019985	0.72	-0.7
4,360,676	-		TX73_019985	0.73	+1.0
4,360,695	-		TX73_019985	0.74	-0.8
4,360,702	-		TX73_019985	0.75	-1.6
4,360,711	-		TX73_019985	0.75	+0.7
4,360,746	+		TX73_019985	0.77	-0.2
4,360,749	+		TX73_019985	0.77	-0.8
4,360,762	-		TX73_019985	0.78	-0.1
4,360,821	-		TX73_019985	0.81	-0.1
4,360,865	+		TX73_019985	0.83	-0.5
4,360,988	-		TX73_019985	0.90	-0.7
4,361,010	+				+1.7
4,361,071	-				+0.6
4,361,097	-				+0.5
4,361,208	-				-0.1
4,361,269	+				-0.0
4,361,273	-				+3.1
4,361,273	-				+1.5
4,361,304	+				+1.2
4,361,304	+				+0.9
4,361,314	+				-0.6
4,361,314	+				-2.4
4,361,322	-				+0.6
4,361,327	-				+1.0
4,361,476	-				+0.9
4,361,505	-				-1.2
4,361,576	-				+1.0
4,361,584	-				+1.6
4,361,605	-				+0.6
4,361,638	+				-1.3
4,361,695	-				-0.6
4,361,724	-		TX73_019990	0.17	+0.5
4,361,737	-		TX73_019990	0.22	+0.7
4,361,783	+		TX73_019990	0.40	-2.0
4,361,783	+		TX73_019990	0.40	+0.2
4,361,858	+		TX73_019990	0.69	-0.9
4,361,891	-		TX73_019990	0.82	-1.0
4,361,930	+				-0.5
4,361,930	+				+0.4
4,361,930	+				-3.0
4,361,938	-				-3.7
4,361,940	-				+0.6
4,361,940	-				-0.9
4,361,941	-				+0.1
4,361,941	-				+1.0
4,361,962	+				-2.9
4,361,962	+				-0.2
4,361,962	+				-0.0
4,361,970	-				+0.4
4,361,981	-		TX73_019995	0.14	-0.3
4,361,982	+		TX73_019995	0.15	-1.2
4,362,034	+		TX73_019995	0.42	+0.3
4,362,048	-		TX73_019995	0.50	+0.9
4,362,060	+		TX73_019995	0.56	-2.8
4,362,070	+		TX73_019995	0.61	-1.3
4,362,094	-		TX73_019995	0.74	-1.8
4,362,095	-		TX73_019995	0.75	-1.2
4,362,100	-		TX73_019995	0.77	+1.2
4,362,112	+		TX73_019995	0.84	+0.9
4,362,116	+		TX73_019995	0.86	+0.6
4,362,125	-				-0.2
4,362,165	-				+0.4