Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_017435

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
3,811,399	+		TX73_017420	0.88	-0.5
3,811,438	+				-2.0
3,811,446	-				+0.4
3,811,446	-				-0.4
3,811,461	+				-0.8
3,811,461	+				+1.0
3,811,461	+				-0.3
3,811,469	-				-0.8
3,811,469	-				+0.5
3,811,469	-				+1.1
3,811,469	-				-0.5
3,811,479	-				-0.7
3,811,490	+				-1.7
3,811,494	+				+0.0
3,811,502	-				+2.4
3,811,525	-				-2.1
3,811,529	+				-2.1
3,811,529	+				-1.8
3,811,568	-				-1.9
3,811,579	-				-0.5
3,811,637	+				+1.9
3,811,640	-				+0.6
3,811,668	+				-0.2
3,811,689	-				-0.8
3,811,699	+				-1.1
3,811,700	-				-0.1
3,811,767	-				+1.0
3,811,771	+				+0.8
3,811,771	+				+1.6
3,811,779	-				-0.1
3,811,779	-				-0.9
3,811,779	-				+0.5
3,811,779	-				+0.4
3,811,793	+				+3.4
3,811,793	+				+0.7
3,811,798	+				+0.1
3,811,830	+		TX73_017425	0.25	-0.7
3,811,835	+		TX73_017425	0.29	-0.2
3,811,876	+		TX73_017425	0.65	+1.2
3,811,913	+				+0.7
3,811,913	+				-0.0
3,811,918	+				-2.3
3,811,921	-				+1.4
3,811,926	-				+2.3
3,811,931	-				-1.1
3,811,960	-				+1.1
3,812,027	-				+0.5
3,812,029	+				+0.5
3,812,039	+				+0.1
3,812,061	+				+0.6
3,812,093	-		TX73_017430	0.16	+0.6
3,812,123	+		TX73_017430	0.40	+1.7
3,812,129	+		TX73_017430	0.44	+1.1
3,812,133	-		TX73_017430	0.48	-1.6
3,812,136	+		TX73_017430	0.50	+1.0
3,812,136	+		TX73_017430	0.50	+1.6
3,812,202	-				-2.0
3,812,230	+				+0.1
3,812,271	-				+0.7
3,812,292	-				-2.6
3,812,295	+				-0.3
3,812,331	+				-0.5
3,812,339	-				+1.5
3,812,339	-				-0.3
3,812,372	-				+1.7
3,812,375	+				-0.6
3,812,385	+				-0.8
3,812,404	-				-1.2
3,812,406	+				+2.5
3,812,411	+				-1.0
3,812,419	-				+0.8
3,812,431	-				-0.1
3,812,441	-				+2.4
3,812,445	+				+2.2
3,812,445	+				+1.0
3,812,480	+		TX73_017435	0.14	-1.2
3,812,511	-		TX73_017435	0.18	+0.6
3,812,523	-		TX73_017435	0.20	+1.0
3,812,523	-		TX73_017435	0.20	-2.6
3,812,525	-		TX73_017435	0.20	+0.3
3,812,534	-		TX73_017435	0.21	-2.2
3,812,567	-		TX73_017435	0.26	-0.7
3,812,571	-		TX73_017435	0.26	-1.1
3,812,670	+		TX73_017435	0.40	+0.9
3,812,677	-		TX73_017435	0.41	+2.2
3,812,694	-		TX73_017435	0.44	-0.5
3,812,694	-		TX73_017435	0.44	+0.5
3,812,694	-		TX73_017435	0.44	-1.5
3,812,702	+		TX73_017435	0.45	-1.9
3,812,732	-		TX73_017435	0.49	+0.1
3,812,789	-		TX73_017435	0.57	+0.4
3,812,794	-		TX73_017435	0.58	-1.2
3,812,817	-		TX73_017435	0.61	+1.4
3,812,868	+		TX73_017435	0.68	-0.4
3,812,868	+		TX73_017435	0.68	+2.3
3,812,868	+		TX73_017435	0.68	+0.6
3,812,868	+		TX73_017435	0.68	+0.8
3,812,868	+		TX73_017435	0.68	+1.3
3,812,876	-		TX73_017435	0.69	-2.6
3,812,876	-		TX73_017435	0.69	+1.4
3,812,876	-		TX73_017435	0.69	-0.2
3,812,876	-		TX73_017435	0.69	-0.5
3,812,876	-		TX73_017435	0.69	+1.9
3,812,876	-		TX73_017435	0.69	+2.1
3,812,876	-		TX73_017435	0.69	-1.6
3,812,876	-		TX73_017435	0.69	-1.6
3,812,913	-		TX73_017435	0.74	-2.1
3,812,940	-		TX73_017435	0.78	-0.8
3,812,951	+		TX73_017435	0.80	+0.8
3,812,959	-		TX73_017435	0.81	+0.4
3,812,977	+		TX73_017435	0.83	-2.5
3,812,989	+		TX73_017435	0.85	-0.2
3,812,989	+		TX73_017435	0.85	-0.8
3,812,997	-		TX73_017435	0.86	+1.1
3,813,004	+		TX73_017435	0.87	+0.1
3,813,012	-		TX73_017435	0.88	-1.0
3,813,013	-		TX73_017435	0.88	-0.6
3,813,016	-		TX73_017435	0.89	-1.7
3,813,018	-		TX73_017435	0.89	+1.4
3,813,018	-		TX73_017435	0.89	-2.3
3,813,054	-				-0.7
3,813,087	+				+1.0
3,813,099	+				+0.7
3,813,113	-				-2.6
3,813,125	+				+0.3
3,813,133	-				-0.2
3,813,133	-				+0.4
3,813,135	+				+0.0
3,813,143	-				+0.2
3,813,143	-				+0.8
3,813,178	+				+0.1
3,813,230	+				-1.1
3,813,277	+				-0.2
3,813,277	+				-3.1
3,813,285	-				-2.3
3,813,289	-				-1.1
3,813,398	+		TX73_017440	0.27	-0.5
3,813,398	+		TX73_017440	0.27	+0.3
3,813,398	+		TX73_017440	0.27	+0.9
3,813,398	+		TX73_017440	0.27	+0.5
3,813,398	+		TX73_017440	0.27	+1.1
3,813,398	+		TX73_017440	0.27	+0.7
3,813,398	+		TX73_017440	0.27	+2.6
3,813,398	+		TX73_017440	0.27	-1.9
3,813,398	+		TX73_017440	0.27	+0.7
3,813,406	-		TX73_017440	0.29	-0.5
3,813,406	-		TX73_017440	0.29	-2.4
3,813,406	-		TX73_017440	0.29	-0.7
3,813,406	-		TX73_017440	0.29	-0.6
3,813,416	+		TX73_017440	0.31	-1.6
3,813,421	+		TX73_017440	0.33	+0.6
3,813,421	+		TX73_017440	0.33	+0.1
3,813,423	+		TX73_017440	0.33	-1.0
3,813,428	-		TX73_017440	0.34	-0.8
3,813,429	-		TX73_017440	0.35	+0.2
3,813,429	-		TX73_017440	0.35	+1.1
3,813,431	-		TX73_017440	0.35	-1.6
3,813,472	+		TX73_017440	0.45	-2.1
3,813,477	+		TX73_017440	0.46	-1.4
3,813,495	-		TX73_017440	0.50	-0.7
3,813,502	+		TX73_017440	0.52	-0.8
3,813,505	-		TX73_017440	0.53	+0.3
3,813,510	-		TX73_017440	0.54	+1.4
3,813,510	-		TX73_017440	0.54	-0.1
3,813,555	-		TX73_017440	0.65	+0.9
3,813,580	+		TX73_017440	0.70	-1.8
3,813,618	+		TX73_017440	0.80	-0.1
3,813,618	+		TX73_017440	0.80	-1.3
3,813,618	+		TX73_017440	0.80	+0.4
3,813,623	+		TX73_017440	0.81	-1.1
3,813,626	-		TX73_017440	0.81	+1.3
3,813,626	-		TX73_017440	0.81	-0.4
3,813,631	-		TX73_017440	0.83	-0.9
3,813,644	+		TX73_017440	0.86	-0.2
3,813,644	+		TX73_017440	0.86	-0.3
3,813,644	+		TX73_017440	0.86	+0.0
3,813,652	-		TX73_017440	0.88	+0.6
3,813,652	-		TX73_017440	0.88	+1.5
3,813,652	-		TX73_017440	0.88	+0.9
3,813,652	-		TX73_017440	0.88	-2.1
3,813,672	+				+0.6
3,813,686	+				-2.3
3,813,698	+				-2.0
3,813,706	-				+1.7
3,813,706	-				-2.4
3,813,709	+				-3.2
3,813,709	+				+0.4
3,813,758	+				-0.8
3,813,788	+				-0.1
3,813,796	-				-1.3
3,813,805	+				-1.1
3,813,823	-				+0.6
3,813,830	+		TX73_017445	0.11	+0.1
3,813,838	-		TX73_017445	0.14	+1.2
3,813,844	-		TX73_017445	0.16	+3.1
3,813,869	+		TX73_017445	0.25	+1.6
3,813,870	-		TX73_017445	0.25	-1.9
3,813,888	+		TX73_017445	0.31	+0.4
3,813,894	-		TX73_017445	0.33	+0.1
3,813,896	+		TX73_017445	0.34	+0.8
3,813,896	-		TX73_017445	0.34	+3.1
3,813,896	-		TX73_017445	0.34	-0.8
3,813,901	+		TX73_017445	0.35	-2.5
3,813,903	-		TX73_017445	0.36	+1.0
3,813,904	-		TX73_017445	0.36	-3.2
3,813,916	+		TX73_017445	0.40	+0.4
3,813,919	-		TX73_017445	0.41	-2.5
3,813,921	+		TX73_017445	0.42	-2.3
3,813,931	-		TX73_017445	0.45	+0.5
3,813,931	-		TX73_017445	0.45	-0.6
3,813,937	-		TX73_017445	0.47	-0.6
3,813,943	+		TX73_017445	0.49	-2.9
3,813,943	+		TX73_017445	0.49	+0.6
3,813,943	+		TX73_017445	0.49	-1.2
3,813,951	-		TX73_017445	0.52	-0.8
3,813,951	-		TX73_017445	0.52	+0.4
3,813,985	+		TX73_017445	0.64	-1.7
3,813,985	+		TX73_017445	0.64	-1.6
3,813,993	-		TX73_017445	0.66	+0.7
3,813,994	-		TX73_017445	0.67	-1.9
3,813,998	-		TX73_017445	0.68	-2.4
3,814,005	+		TX73_017445	0.70	+0.3
3,814,051	+		TX73_017445	0.86	-2.1
3,814,066	-				-2.5
3,814,080	+				+0.1
3,814,081	+				+0.3
3,814,082	+				+0.9
3,814,082	+				-1.2
3,814,082	+				-1.8
3,814,082	+				+1.2
3,814,083	-				+0.9
3,814,090	-				+0.1
3,814,090	-				-0.3
3,814,090	-				-0.3
3,814,090	-				-3.1
3,814,090	-				-2.6
3,814,090	-				+1.9
3,814,090	-				-0.7
3,814,090	-				-0.9