Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014635

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
3,199,488	+		TX73_014630	0.45	+2.9
3,199,511	-		TX73_014630	0.48	-0.2
3,199,526	+		TX73_014630	0.50	+0.6
3,199,575	-		TX73_014630	0.55	-0.3
3,199,584	+		TX73_014630	0.56	-0.9
3,199,585	+		TX73_014630	0.56	-1.3
3,199,586	+		TX73_014630	0.56	+0.7
3,199,586	+		TX73_014630	0.56	-0.6
3,199,592	-		TX73_014630	0.57	-1.6
3,199,594	-		TX73_014630	0.57	+0.1
3,199,594	-		TX73_014630	0.57	-1.4
3,199,594	-		TX73_014630	0.57	+0.4
3,199,594	-		TX73_014630	0.57	-0.4
3,199,646	+		TX73_014630	0.63	-0.3
3,199,650	-		TX73_014630	0.63	+0.2
3,199,652	-		TX73_014630	0.64	-1.4
3,199,652	-		TX73_014630	0.64	-2.6
3,199,654	-		TX73_014630	0.64	-1.3
3,199,663	+		TX73_014630	0.65	-2.3
3,199,673	+		TX73_014630	0.66	+0.5
3,199,702	+		TX73_014630	0.69	+0.6
3,199,707	+		TX73_014630	0.70	-0.4
3,199,724	+		TX73_014630	0.72	+0.1
3,199,729	-		TX73_014630	0.72	-0.6
3,199,729	-		TX73_014630	0.72	+0.7
3,199,736	+		TX73_014630	0.73	-0.4
3,199,754	+		TX73_014630	0.75	+2.0
3,199,787	-		TX73_014630	0.79	+1.0
3,199,795	+		TX73_014630	0.80	-1.9
3,199,795	+		TX73_014630	0.80	-0.5
3,199,799	-		TX73_014630	0.80	-2.4
3,199,802	+		TX73_014630	0.80	-2.1
3,199,804	+		TX73_014630	0.81	+2.0
3,199,815	+		TX73_014630	0.82	-0.7
3,199,817	+		TX73_014630	0.82	-0.5
3,199,844	+		TX73_014630	0.85	+0.5
3,199,859	+		TX73_014630	0.87	+0.9
3,199,859	+		TX73_014630	0.87	+1.0
3,199,859	+		TX73_014630	0.87	+1.2
3,199,867	-		TX73_014630	0.88	+1.7
3,199,867	-		TX73_014630	0.88	-0.9
3,199,877	-		TX73_014630	0.89	-2.0
3,199,908	-				-2.8
3,199,923	-				+0.7
3,199,950	+				-1.7
3,199,979	-				+2.3
3,199,995	+				+1.1
3,200,002	-				-0.2
3,200,003	-				+1.7
3,200,003	-				+1.9
3,200,025	-				-1.6
3,200,037	+				-2.8
3,200,071	-				-0.9
3,200,071	-				+0.3
3,200,151	-				-1.7
3,200,152	-				+1.3
3,200,172	+				-1.8
3,200,180	-				+0.9
3,200,245	-				+0.3
3,200,256	+				+0.5
3,200,256	+				+1.7
3,200,264	-				-1.4
3,200,264	-				-1.0
3,200,264	-				-1.8
3,200,269	+				-0.4
3,200,293	+				+0.3
3,200,293	+				+0.4
3,200,293	+				-0.0
3,200,301	-				-1.0
3,200,303	+				+1.0
3,200,311	-				+0.2
3,200,363	+				-1.5
3,200,382	+				-0.5
3,200,382	+				-0.9
3,200,420	-				-0.5
3,200,421	-				-0.4
3,200,469	-				+0.7
3,200,471	+				+0.5
3,200,517	-		TX73_014635	0.27	+0.1
3,200,523	+		TX73_014635	0.31	+0.4
3,200,531	+		TX73_014635	0.36	+0.5
3,200,531	+		TX73_014635	0.36	+1.3
3,200,536	+		TX73_014635	0.39	-1.7
3,200,539	-		TX73_014635	0.41	+1.9
3,200,616	+				-0.9
3,200,616	+				-2.9
3,200,624	-				-1.7
3,200,624	-				+0.1
3,200,631	-				-1.2
3,200,632	+				-2.2
3,200,635	-				-1.5
3,200,641	+				-0.1
3,200,664	+				+1.0
3,200,668	+				+0.4
3,200,671	+				-1.4
3,200,679	+				+0.5
3,200,681	+				-2.2
3,200,698	+				-0.3
3,200,698	+				+0.5
3,200,698	+				+1.3
3,200,698	+				+0.0
3,200,698	+				-1.0
3,200,698	+				+1.6
3,200,706	-				-0.4
3,200,706	-				+1.0
3,200,706	-				-0.1
3,200,706	-				-1.2
3,200,728	+				-0.5
3,200,736	-				+1.3
3,200,762	-				+0.6
3,200,762	-				-0.4
3,200,762	-				-2.4
3,200,765	+				+0.6
3,200,780	+				-2.0
3,200,788	-				-0.3
3,200,792	+				-0.1
3,200,793	-				-1.8
3,200,803	+				+0.4
3,200,865	+				-1.5
3,200,865	+				-1.6
3,200,891	+				+0.8
3,200,891	+				+0.3
3,200,898	-				-1.4
3,200,899	-				+0.9
3,200,900	+				+1.2
3,200,914	+		TX73_014640	0.10	-0.5
3,200,916	-		TX73_014640	0.11	-1.5
3,200,929	-		TX73_014640	0.11	+0.4
3,200,930	+		TX73_014640	0.11	-0.5
3,200,930	+		TX73_014640	0.11	-1.4
3,200,930	-		TX73_014640	0.11	-0.0
3,200,930	-		TX73_014640	0.11	+0.7
3,200,948	-		TX73_014640	0.13	-0.7
3,200,974	-		TX73_014640	0.15	-2.1
3,200,994	+		TX73_014640	0.16	-0.0
3,201,002	-		TX73_014640	0.16	-2.4
3,201,002	-		TX73_014640	0.16	-1.1
3,201,017	-		TX73_014640	0.18	-0.3
3,201,017	-		TX73_014640	0.18	+0.2
3,201,017	-		TX73_014640	0.18	+0.5
3,201,017	-		TX73_014640	0.18	+0.1
3,201,035	+		TX73_014640	0.19	-1.5
3,201,039	+		TX73_014640	0.19	+0.8
3,201,058	-		TX73_014640	0.20	+1.8
3,201,068	-		TX73_014640	0.21	-0.3
3,201,075	-		TX73_014640	0.22	+0.9
3,201,101	+		TX73_014640	0.23	-0.7
3,201,103	+		TX73_014640	0.24	+0.3
3,201,105	+		TX73_014640	0.24	+0.3
3,201,109	+		TX73_014640	0.24	+0.5
3,201,111	-		TX73_014640	0.24	-0.5
3,201,111	-		TX73_014640	0.24	-0.3
3,201,113	-		TX73_014640	0.24	-1.6
3,201,120	+		TX73_014640	0.25	-1.4
3,201,123	-		TX73_014640	0.25	-0.3
3,201,131	+		TX73_014640	0.25	-0.4
3,201,132	-		TX73_014640	0.26	+0.8
3,201,141	+		TX73_014640	0.26	-0.4
3,201,149	-		TX73_014640	0.27	-1.4
3,201,157	-		TX73_014640	0.27	+1.5
3,201,172	+		TX73_014640	0.28	-2.2
3,201,173	+		TX73_014640	0.28	-0.3
3,201,178	+		TX73_014640	0.29	-1.7
3,201,181	-		TX73_014640	0.29	+1.7
3,201,210	+		TX73_014640	0.31	-0.1
3,201,210	+		TX73_014640	0.31	-0.4
3,201,210	+		TX73_014640	0.31	-1.6
3,201,218	-		TX73_014640	0.32	-1.7
3,201,218	-		TX73_014640	0.32	-1.9
3,201,226	-		TX73_014640	0.32	+0.6
3,201,233	+		TX73_014640	0.33	-1.2
3,201,234	+		TX73_014640	0.33	-0.1
3,201,242	-		TX73_014640	0.33	+0.4
3,201,251	-		TX73_014640	0.34	+0.2
3,201,287	+		TX73_014640	0.36	-2.3
3,201,359	-		TX73_014640	0.41	+0.8
3,201,403	+		TX73_014640	0.44	-0.3
3,201,403	+		TX73_014640	0.44	-0.8
3,201,411	-		TX73_014640	0.45	-0.4
3,201,411	-		TX73_014640	0.45	-2.0
3,201,427	+		TX73_014640	0.46	+0.0
3,201,435	-		TX73_014640	0.47	-0.1
3,201,443	+		TX73_014640	0.47	+1.4
3,201,461	+		TX73_014640	0.48	+0.9
3,201,473	-		TX73_014640	0.49	+0.1
3,201,481	-		TX73_014640	0.50	+2.5
3,201,497	+		TX73_014640	0.51	+0.3
3,201,557	+		TX73_014640	0.55	+0.6
3,201,576	+		TX73_014640	0.56	+0.5
3,201,576	+		TX73_014640	0.56	+1.7
3,201,576	+		TX73_014640	0.56	-0.4
3,201,584	+		TX73_014640	0.57	+1.6
3,201,584	-		TX73_014640	0.57	-0.2
3,201,584	-		TX73_014640	0.57	+0.5
3,201,589	+		TX73_014640	0.57	+2.7
3,201,589	+		TX73_014640	0.57	-1.1
3,201,589	+		TX73_014640	0.57	+0.8
3,201,597	-		TX73_014640	0.58	+1.8
3,201,602	+		TX73_014640	0.58	-0.0
3,201,610	-		TX73_014640	0.59	-1.1
3,201,615	-		TX73_014640	0.59	-0.6
3,201,618	+		TX73_014640	0.59	-0.5