Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011130

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
2,429,587	+		TX73_011125	0.28	-0.6
2,429,597	+		TX73_011125	0.29	-1.2
2,429,610	+		TX73_011125	0.30	+0.9
2,429,626	-		TX73_011125	0.31	-1.6
2,429,634	-		TX73_011125	0.32	-1.3
2,429,637	+		TX73_011125	0.32	+1.4
2,429,637	+		TX73_011125	0.32	-1.9
2,429,642	+		TX73_011125	0.32	-0.7
2,429,645	-		TX73_011125	0.33	+1.2
2,429,650	-		TX73_011125	0.33	+0.6
2,429,657	+		TX73_011125	0.34	+0.6
2,429,660	-		TX73_011125	0.34	+1.2
2,429,663	-		TX73_011125	0.34	+2.1
2,429,665	-		TX73_011125	0.34	+1.9
2,429,665	-		TX73_011125	0.34	-0.5
2,429,665	-		TX73_011125	0.34	+0.5
2,429,675	-		TX73_011125	0.35	+1.7
2,429,675	-		TX73_011125	0.35	-0.9
2,429,680	-		TX73_011125	0.36	+0.1
2,429,696	+		TX73_011125	0.37	+1.3
2,429,764	-		TX73_011125	0.43	+2.1
2,429,771	-		TX73_011125	0.43	+1.6
2,429,808	-		TX73_011125	0.46	-0.8
2,429,846	+		TX73_011125	0.49	+0.6
2,429,875	+		TX73_011125	0.52	+0.8
2,429,875	+		TX73_011125	0.52	-1.7
2,429,876	-		TX73_011125	0.52	+1.7
2,429,883	-		TX73_011125	0.53	+1.7
2,429,884	-		TX73_011125	0.53	-1.3
2,429,890	+		TX73_011125	0.53	-1.3
2,429,898	-		TX73_011125	0.54	-1.4
2,429,901	-		TX73_011125	0.54	-1.1
2,429,925	-		TX73_011125	0.56	-0.9
2,429,925	-		TX73_011125	0.56	-0.7
2,429,925	-		TX73_011125	0.56	-0.5
2,429,932	-		TX73_011125	0.57	-1.3
2,429,937	-		TX73_011125	0.57	+0.5
2,429,944	-		TX73_011125	0.58	-0.5
2,429,959	-		TX73_011125	0.59	-0.7
2,429,964	+		TX73_011125	0.59	+0.2
2,429,973	+		TX73_011125	0.60	+1.4
2,429,999	+		TX73_011125	0.62	-1.7
2,429,999	+		TX73_011125	0.62	-2.0
2,429,999	-		TX73_011125	0.62	+0.6
2,430,009	+		TX73_011125	0.63	+0.5
2,430,028	+		TX73_011125	0.65	+0.9
2,430,028	+		TX73_011125	0.65	+1.4
2,430,039	+		TX73_011125	0.66	-0.8
2,430,090	-		TX73_011125	0.70	-0.8
2,430,090	-		TX73_011125	0.70	+1.1
2,430,102	+		TX73_011125	0.71	-0.2
2,430,103	+		TX73_011125	0.71	-1.7
2,430,113	-		TX73_011125	0.72	+1.2
2,430,129	+		TX73_011125	0.73	+1.1
2,430,167	+		TX73_011125	0.76	+1.3
2,430,172	+		TX73_011125	0.77	-1.9
2,430,172	+		TX73_011125	0.77	-1.0
2,430,175	-		TX73_011125	0.77	+0.3
2,430,180	-		TX73_011125	0.77	-0.1
2,430,180	-		TX73_011125	0.77	+0.7
2,430,180	-		TX73_011125	0.77	+0.7
2,430,197	+		TX73_011125	0.79	-0.9
2,430,205	-		TX73_011125	0.79	+0.5
2,430,213	+		TX73_011125	0.80	-1.2
2,430,221	+		TX73_011125	0.81	-1.2
2,430,221	-		TX73_011125	0.81	+0.9
2,430,221	-		TX73_011125	0.81	-0.1
2,430,243	+		TX73_011125	0.83	-0.2
2,430,251	-		TX73_011125	0.83	-1.9
2,430,274	-		TX73_011125	0.85	-0.2
2,430,278	-		TX73_011125	0.86	+0.8
2,430,319	+		TX73_011125	0.89	-1.6
2,430,327	-		TX73_011125	0.90	-0.0
2,430,332	-				-0.1
2,430,332	-				-1.7
2,430,351	+				-0.5
2,430,359	-				-1.1
2,430,378	+				+0.1
2,430,378	+				-1.5
2,430,386	-				+0.7
2,430,422	-				-1.3
2,430,423	-				+0.7
2,430,423	-				+2.2
2,430,440	-				+1.3
2,430,441	+				+1.0
2,430,444	+				+3.6
2,430,454	+				-2.0
2,430,454	+				+0.9
2,430,460	-				-1.0
2,430,462	-				-0.0
2,430,462	-				+0.2
2,430,474	+				-1.9
2,430,481	+				-1.2
2,430,482	-				-1.6
2,430,508	+				+0.8
2,430,552	+				-1.0
2,430,560	-				-1.1
2,430,590	+				-1.9
2,430,590	+				+0.9
2,430,590	+				-1.2
2,430,590	+				-1.7
2,430,591	-				-0.2
2,430,591	-				+0.1
2,430,597	-				+0.4
2,430,598	-				-0.2
2,430,600	+				+1.3
2,430,604	+				-1.1
2,430,654	+		TX73_011130	0.21	+0.7
2,430,655	+		TX73_011130	0.21	+1.4
2,430,655	+		TX73_011130	0.21	-0.4
2,430,660	+		TX73_011130	0.22	-2.0
2,430,662	-		TX73_011130	0.23	-0.9
2,430,665	+		TX73_011130	0.24	-0.5
2,430,668	-		TX73_011130	0.25	+0.8
2,430,668	-		TX73_011130	0.25	+0.8
2,430,668	-		TX73_011130	0.25	-2.4
2,430,673	-		TX73_011130	0.26	+0.5
2,430,726	-		TX73_011130	0.42	+0.7
2,430,739	+		TX73_011130	0.46	+0.9
2,430,740	-		TX73_011130	0.47	-0.0
2,430,766	-		TX73_011130	0.55	+0.4
2,430,785	+		TX73_011130	0.60	+0.2
2,430,785	+		TX73_011130	0.60	+1.3
2,430,789	-		TX73_011130	0.62	+1.5
2,430,791	-		TX73_011130	0.62	+1.1
2,430,793	-		TX73_011130	0.63	+0.9
2,430,793	-		TX73_011130	0.63	+1.7
2,430,793	-		TX73_011130	0.63	-1.9
2,430,793	-		TX73_011130	0.63	+0.2
2,430,793	-		TX73_011130	0.63	+0.8
2,430,793	-		TX73_011130	0.63	+1.5
2,430,795	+		TX73_011130	0.63	+2.0
2,430,798	-		TX73_011130	0.64	-0.9
2,430,802	+		TX73_011130	0.65	+1.5
2,430,803	-		TX73_011130	0.66	+0.5
2,430,819	+		TX73_011130	0.71	-0.1
2,430,853	+		TX73_011130	0.81	+1.2
2,430,853	+		TX73_011130	0.81	+0.4
2,430,859	-		TX73_011130	0.83	+1.0
2,430,861	-		TX73_011130	0.83	-0.1
2,430,877	+		TX73_011130	0.88	-1.4
2,430,885	-				-0.7
2,430,890	-				-1.9
2,430,890	-				+1.5
2,430,899	+				+1.4
2,430,911	+				+0.1
2,430,933	+				+0.0
2,430,936	+				+0.9
2,430,951	+				+0.7
2,431,011	+				+0.5
2,431,019	-				-1.5
2,431,043	-				+0.1
2,431,044	+				+0.2
2,431,055	+		TX73_011135	0.11	+0.3
2,431,063	-		TX73_011135	0.15	+4.4
2,431,086	+		TX73_011135	0.24	-0.1
2,431,086	+		TX73_011135	0.24	+0.6
2,431,092	-		TX73_011135	0.26	+0.2
2,431,092	-		TX73_011135	0.26	+0.9
2,431,096	+		TX73_011135	0.27	-0.1
2,431,096	+		TX73_011135	0.27	+0.5
2,431,096	+		TX73_011135	0.27	-0.9
2,431,101	+		TX73_011135	0.29	-2.6
2,431,104	-		TX73_011135	0.31	+1.2
2,431,104	-		TX73_011135	0.31	-2.2
2,431,109	-		TX73_011135	0.33	-0.7
2,431,109	-		TX73_011135	0.33	+0.4
2,431,109	-		TX73_011135	0.33	-3.0
2,431,135	+		TX73_011135	0.43	-0.0
2,431,135	+		TX73_011135	0.43	-2.5
2,431,135	+		TX73_011135	0.43	+1.6
2,431,143	-		TX73_011135	0.46	-1.2
2,431,143	-		TX73_011135	0.46	+0.3
2,431,143	-		TX73_011135	0.46	+0.4
2,431,143	-		TX73_011135	0.46	+1.4
2,431,143	-		TX73_011135	0.46	+0.9
2,431,143	-		TX73_011135	0.46	+1.4
2,431,148	-		TX73_011135	0.48	-0.6
2,431,148	-		TX73_011135	0.48	-1.0
2,431,148	-		TX73_011135	0.48	-0.9
2,431,202	+		TX73_011135	0.69	-0.1
2,431,212	+		TX73_011135	0.73	+0.7
2,431,212	+		TX73_011135	0.73	+1.4
2,431,215	-		TX73_011135	0.74	-0.1
2,431,220	-		TX73_011135	0.76	-0.4
2,431,222	-		TX73_011135	0.77	-2.4
2,431,222	-		TX73_011135	0.77	-2.2
2,431,227	-		TX73_011135	0.79	+0.8
2,431,227	-		TX73_011135	0.79	-1.8
2,431,227	-		TX73_011135	0.79	-0.7
2,431,237	+		TX73_011135	0.83	-0.3
2,431,237	-		TX73_011135	0.83	+1.2
2,431,283	-				+1.1
2,431,284	+				+3.1
2,431,306	+				+0.1
2,431,306	-				-2.0
2,431,317	+				+4.4
2,431,403	+				+0.1
2,431,403	+				-0.7
2,431,403	+				-0.1
2,431,403	+				-0.8
2,431,411	-				+0.6
2,431,411	-				+1.2
2,431,411	-				+1.3
2,431,411	-				-0.6
2,431,411	-				+0.7
2,431,411	-				-1.5
2,431,418	+				+0.3
2,431,428	-				-2.3
2,431,448	-				-0.2
2,431,455	-				-1.1
2,431,467	+				+0.5
2,431,598	-		TX73_011140	0.18	+2.2
2,431,632	+		TX73_011140	0.22	-1.4
2,431,640	-		TX73_011140	0.23	-0.1
2,431,659	-		TX73_011140	0.26	+1.3
2,431,701	-		TX73_011140	0.31	-0.9
2,431,729	-		TX73_011140	0.35	+2.1
2,431,757	-		TX73_011140	0.39	-0.4
2,431,826	-		TX73_011140	0.48	+1.0
2,431,850	+		TX73_011140	0.51	-1.9
2,431,893	-		TX73_011140	0.57	+1.5
2,431,894	+		TX73_011140	0.57	+1.3