Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010195

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
2,227,425	-				+14.7
2,227,433	-				+11.3
2,227,587	-				+6.3
2,227,592	-				+0.2
2,227,671	+				+0.0
2,227,858	+		TX73_010190	0.35	+1.7
2,227,896	+		TX73_010190	0.42	+9.5
2,228,016	+		TX73_010190	0.62	+13.0
2,228,021	+		TX73_010190	0.63	-0.8
2,228,043	+		TX73_010190	0.66	+12.6
2,228,078	-		TX73_010190	0.72	+1.4
2,228,187	+				+1.3
2,228,187	+				+0.6
2,228,187	+				+1.7
2,228,195	-				+0.2
2,228,195	-				+9.2
2,228,215	+				+2.6
2,228,223	-				+4.9
2,228,223	-				+0.4
2,228,233	-				+6.5
2,228,233	-				+10.9
2,228,336	-				+2.8
2,228,437	+				-1.1
2,228,497	-				+1.0
2,228,505	-				+0.7
2,228,526	+		TX73_010195	0.11	-0.1
2,228,526	+		TX73_010195	0.11	-2.5
2,228,531	+		TX73_010195	0.11	-0.6
2,228,531	+		TX73_010195	0.11	-0.5
2,228,531	+		TX73_010195	0.11	+2.1
2,228,542	+		TX73_010195	0.12	-2.3
2,228,573	-		TX73_010195	0.15	+1.4
2,228,580	-		TX73_010195	0.16	-1.1
2,228,580	-		TX73_010195	0.16	-1.1
2,228,608	-		TX73_010195	0.18	-1.5
2,228,608	-		TX73_010195	0.18	+0.1
2,228,684	-		TX73_010195	0.26	+2.0
2,228,720	-		TX73_010195	0.29	+1.4
2,228,793	+		TX73_010195	0.36	+0.6
2,228,807	+		TX73_010195	0.38	+1.8
2,228,816	-		TX73_010195	0.39	+0.2
2,228,841	+		TX73_010195	0.41	+0.5
2,228,841	+		TX73_010195	0.41	+1.9
2,228,844	-		TX73_010195	0.41	-1.5
2,228,857	+		TX73_010195	0.43	+0.8
2,228,865	-		TX73_010195	0.43	+0.4
2,228,885	-		TX73_010195	0.45	-1.1
2,228,910	+		TX73_010195	0.48	+1.3
2,228,926	-		TX73_010195	0.49	+0.4
2,228,926	-		TX73_010195	0.49	+0.6
2,228,939	-		TX73_010195	0.50	+0.3
2,228,944	-		TX73_010195	0.51	+1.9
2,228,966	-		TX73_010195	0.53	-1.2
2,228,979	+		TX73_010195	0.54	+1.4
2,228,979	+		TX73_010195	0.54	+0.3
2,229,036	+		TX73_010195	0.60	+1.0
2,229,053	-		TX73_010195	0.61	+1.0
2,229,085	-		TX73_010195	0.65	+0.6
2,229,090	-		TX73_010195	0.65	+0.6
2,229,155	-		TX73_010195	0.71	+1.4
2,229,155	-		TX73_010195	0.71	+0.4
2,229,155	-		TX73_010195	0.71	-1.5
2,229,155	-		TX73_010195	0.71	-2.6
2,229,164	-		TX73_010195	0.72	+0.8
2,229,164	-		TX73_010195	0.72	+2.2
2,229,213	-		TX73_010195	0.77	-2.8
2,229,216	+		TX73_010195	0.77	+0.9
2,229,244	-		TX73_010195	0.80	-0.4
2,229,245	-		TX73_010195	0.80	-0.8
2,229,274	+		TX73_010195	0.83	+0.7
2,229,274	+		TX73_010195	0.83	+1.5
2,229,274	+		TX73_010195	0.83	-1.8
2,229,278	-		TX73_010195	0.83	+0.3
2,229,282	-		TX73_010195	0.84	+1.1
2,229,294	+		TX73_010195	0.85	+2.6
2,229,297	-		TX73_010195	0.85	+0.1
2,229,297	-		TX73_010195	0.85	+0.8
2,229,308	+		TX73_010195	0.86	+0.7
2,229,308	-		TX73_010195	0.86	+1.2
2,229,309	+		TX73_010195	0.86	+1.3
2,229,326	+		TX73_010195	0.88	+0.4
2,229,326	+		TX73_010195	0.88	-0.9
2,229,326	+		TX73_010195	0.88	+1.1
2,229,326	+		TX73_010195	0.88	-0.1
2,229,326	+		TX73_010195	0.88	-0.1
2,229,327	-		TX73_010195	0.88	-0.1
2,229,332	-		TX73_010195	0.88	-2.1
2,229,336	+		TX73_010195	0.89	-0.1
2,229,361	-				-0.4
2,229,362	+				+0.7
2,229,410	-				-2.0
2,229,423	+				+1.8
2,229,430	-				+0.1
2,229,455	-				-2.1
2,229,464	+				+1.0
2,229,503	+				+2.2
2,229,503	+				+1.4
2,229,511	-				+0.5
2,229,511	-				+0.8
2,229,511	-				-1.0
2,229,511	-				+0.6
2,229,637	-		TX73_010200	0.18	+1.4
2,229,667	+		TX73_010200	0.24	-0.9
2,229,697	-		TX73_010200	0.31	-2.1
2,229,754	+		TX73_010200	0.44	+1.6
2,229,754	+		TX73_010200	0.44	+1.4
2,229,762	-		TX73_010200	0.45	-0.0
2,229,762	-		TX73_010200	0.45	+2.1
2,229,762	-		TX73_010200	0.45	-1.8
2,229,762	-		TX73_010200	0.45	-0.2
2,229,767	-		TX73_010200	0.46	-2.0
2,229,772	-		TX73_010200	0.48	-0.8
2,229,781	+		TX73_010200	0.50	-0.8
2,229,781	+		TX73_010200	0.50	+0.5
2,229,813	-		TX73_010200	0.57	-0.4
2,229,847	+		TX73_010200	0.64	-0.1
2,229,853	-		TX73_010200	0.66	-0.8
2,229,858	-		TX73_010200	0.67	-0.4
2,229,860	+		TX73_010200	0.67	-0.8
2,229,863	+		TX73_010200	0.68	+0.9
2,229,863	-		TX73_010200	0.68	-1.0
2,229,863	-		TX73_010200	0.68	+0.1
2,229,863	-		TX73_010200	0.68	-0.5
2,229,869	+		TX73_010200	0.69	-2.2
2,229,903	+		TX73_010200	0.77	-1.1
2,229,903	+		TX73_010200	0.77	+0.7
2,229,906	-		TX73_010200	0.77	+1.2
2,229,919	-		TX73_010200	0.80	+2.4
2,229,925	-		TX73_010200	0.82	-2.7
2,229,932	+		TX73_010200	0.83	+1.6
2,229,932	+		TX73_010200	0.83	+3.0
2,229,940	+		TX73_010200	0.85	+1.9
2,229,940	+		TX73_010200	0.85	-0.6
2,229,948	-		TX73_010200	0.87	+0.2
2,229,948	-		TX73_010200	0.87	-1.0
2,229,958	+		TX73_010200	0.89	-0.1
2,229,960	+		TX73_010200	0.89	+0.1
2,229,962	+		TX73_010200	0.90	-1.1
2,229,967	+				-0.5
2,229,967	+				-0.8
2,229,970	-				-0.2
2,229,970	-				+1.9
2,229,970	-				-2.8
2,229,977	+				-0.2
2,229,985	-				+1.1
2,229,995	-				+1.0
2,230,012	-				+0.7
2,230,019	-				-2.0
2,230,019	-				+0.0
2,230,044	+				-0.3
2,230,052	-				+1.2
2,230,054	+				-0.3
2,230,054	+				-0.5
2,230,054	+				-0.1
2,230,054	+				+1.6
2,230,054	+				-1.0
2,230,054	+				+0.7
2,230,054	+				+1.0
2,230,054	+				-0.2
2,230,054	+				-1.0
2,230,054	+				+0.7
2,230,054	+				-0.8
2,230,056	+				+0.3
2,230,056	+				+1.3
2,230,056	+				-1.0
2,230,056	+				-0.2
2,230,056	+				+0.5
2,230,056	+				+1.3
2,230,056	+				+1.1
2,230,058	+				+0.7
2,230,062	-				-0.6
2,230,062	-				+0.7
2,230,062	-				-2.0
2,230,062	-				+1.3
2,230,062	-				-0.5
2,230,062	-				+2.0
2,230,062	-				-1.5
2,230,064	-				-1.4
2,230,064	-				-2.0
2,230,064	-				-1.8
2,230,064	-				+1.0
2,230,064	-				-1.5
2,230,064	-				-0.6
2,230,064	-				-2.4
2,230,064	-				-2.0
2,230,066	-				+0.2
2,230,076	-				+1.5
2,230,076	-				-0.5
2,230,084	-				+2.4
2,230,201	+				-0.7
2,230,215	+				-0.4
2,230,216	+				-1.0
2,230,228	+				+0.8
2,230,228	-				+0.3
2,230,234	-				+0.7
2,230,234	-				-2.6
2,230,241	-		TX73_010205	0.10	-0.5
2,230,241	-		TX73_010205	0.10	-2.4
2,230,246	-		TX73_010205	0.11	+0.3
2,230,250	+		TX73_010205	0.12	+0.9
2,230,260	+		TX73_010205	0.13	+1.2
2,230,265	+		TX73_010205	0.14	-0.6
2,230,265	-		TX73_010205	0.14	-0.5
2,230,265	-		TX73_010205	0.14	+1.4
2,230,278	-		TX73_010205	0.16	+1.5
2,230,291	-		TX73_010205	0.18	-0.1
2,230,313	+		TX73_010205	0.21	+0.2
2,230,340	+		TX73_010205	0.25	-0.8
2,230,375	+		TX73_010205	0.30	+1.2
2,230,378	-		TX73_010205	0.31	-2.2
2,230,392	+		TX73_010205	0.33	+0.3
2,230,400	+		TX73_010205	0.34	-1.2
2,230,406	+		TX73_010205	0.35	-0.3
2,230,414	-		TX73_010205	0.36	-2.4
2,230,414	-		TX73_010205	0.36	+1.2
2,230,416	+		TX73_010205	0.36	+0.7
2,230,416	+		TX73_010205	0.36	-1.3
2,230,416	+		TX73_010205	0.36	+0.7
2,230,424	-		TX73_010205	0.37	-1.5
2,230,424	-		TX73_010205	0.37	-2.5
2,230,441	-		TX73_010205	0.40	+0.4