Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010095

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
2,201,865	-		TX73_010090	0.13	-1.6
2,201,865	-		TX73_010090	0.13	-2.4
2,201,865	-		TX73_010090	0.13	-1.2
2,201,865	-		TX73_010090	0.13	+0.6
2,201,865	-		TX73_010090	0.13	+0.0
2,201,865	-		TX73_010090	0.13	+0.1
2,201,867	+		TX73_010090	0.13	+1.1
2,201,893	+		TX73_010090	0.16	+1.1
2,201,901	-		TX73_010090	0.17	-0.5
2,201,901	-		TX73_010090	0.17	+1.6
2,201,901	-		TX73_010090	0.17	-2.0
2,201,901	-		TX73_010090	0.17	+0.8
2,201,927	+		TX73_010090	0.19	+0.7
2,201,952	+		TX73_010090	0.22	+0.6
2,202,002	-		TX73_010090	0.27	+0.5
2,202,034	+		TX73_010090	0.30	-0.0
2,202,034	+		TX73_010090	0.30	-2.4
2,202,034	+		TX73_010090	0.30	-1.1
2,202,039	+		TX73_010090	0.30	+1.0
2,202,039	+		TX73_010090	0.30	-1.3
2,202,040	-		TX73_010090	0.30	-1.7
2,202,042	-		TX73_010090	0.31	-2.8
2,202,047	-		TX73_010090	0.31	+1.6
2,202,054	+		TX73_010090	0.32	-1.8
2,202,061	-		TX73_010090	0.33	-0.7
2,202,082	+		TX73_010090	0.35	+0.7
2,202,118	+		TX73_010090	0.38	+1.0
2,202,131	+		TX73_010090	0.39	+0.5
2,202,134	-		TX73_010090	0.40	+1.8
2,202,154	-		TX73_010090	0.42	-0.8
2,202,154	-		TX73_010090	0.42	-0.3
2,202,171	+		TX73_010090	0.43	+1.8
2,202,176	-		TX73_010090	0.44	-1.2
2,202,199	+		TX73_010090	0.46	+0.1
2,202,199	+		TX73_010090	0.46	+1.1
2,202,221	-		TX73_010090	0.48	-0.7
2,202,226	-		TX73_010090	0.49	+0.2
2,202,231	-		TX73_010090	0.49	-1.9
2,202,238	+		TX73_010090	0.50	+0.1
2,202,238	+		TX73_010090	0.50	-2.4
2,202,238	+		TX73_010090	0.50	-0.5
2,202,277	+		TX73_010090	0.54	+0.5
2,202,277	+		TX73_010090	0.54	+0.7
2,202,277	+		TX73_010090	0.54	-3.0
2,202,277	+		TX73_010090	0.54	-1.0
2,202,285	-		TX73_010090	0.55	-1.5
2,202,285	-		TX73_010090	0.55	+1.6
2,202,285	-		TX73_010090	0.55	-1.6
2,202,302	-		TX73_010090	0.56	-0.9
2,202,311	+		TX73_010090	0.57	+1.1
2,202,311	+		TX73_010090	0.57	+1.0
2,202,347	-		TX73_010090	0.61	+0.9
2,202,368	-		TX73_010090	0.63	-1.2
2,202,453	+		TX73_010090	0.71	-1.9
2,202,481	+		TX73_010090	0.74	-0.6
2,202,481	+		TX73_010090	0.74	-0.2
2,202,489	-		TX73_010090	0.75	-2.4
2,202,526	-		TX73_010090	0.78	+0.1
2,202,531	-		TX73_010090	0.79	+0.6
2,202,628	+		TX73_010090	0.88	+0.7
2,202,628	+		TX73_010090	0.88	+1.0
2,202,702	-				-2.6
2,202,702	-				+0.9
2,202,740	+				+1.7
2,202,753	-				-1.6
2,202,755	+				+0.1
2,202,758	-				-1.3
2,202,763	-				-1.2
2,202,763	-				-2.7
2,202,765	+				-0.5
2,202,768	-				-1.5
2,202,772	+				+0.8
2,202,772	+				+0.3
2,202,780	-				-0.1
2,202,789	-				-2.2
2,202,804	+				+0.5
2,202,812	-				+0.4
2,202,866	+				-2.5
2,202,889	-				+3.1
2,202,895	-				+0.3
2,202,926	+		TX73_010095	0.11	-0.7
2,202,950	+		TX73_010095	0.15	+1.4
2,202,968	+		TX73_010095	0.18	+1.4
2,202,976	-		TX73_010095	0.19	+0.5
2,202,976	-		TX73_010095	0.19	+0.0
2,202,976	-		TX73_010095	0.19	+2.4
2,202,976	-		TX73_010095	0.19	+0.1
2,203,051	+		TX73_010095	0.31	-0.2
2,203,051	+		TX73_010095	0.31	+1.9
2,203,059	-		TX73_010095	0.32	-1.5
2,203,059	-		TX73_010095	0.32	+0.5
2,203,059	-		TX73_010095	0.32	+0.9
2,203,059	-		TX73_010095	0.32	-0.5
2,203,064	-		TX73_010095	0.33	+1.3
2,203,114	-		TX73_010095	0.41	+0.6
2,203,148	-		TX73_010095	0.46	-1.7
2,203,186	-		TX73_010095	0.53	+0.3
2,203,192	-		TX73_010095	0.54	+0.5
2,203,216	-		TX73_010095	0.57	+0.6
2,203,240	-		TX73_010095	0.61	+0.9
2,203,240	-		TX73_010095	0.61	+0.2
2,203,336	+		TX73_010095	0.77	+0.0
2,203,377	+		TX73_010095	0.83	+3.4
2,203,390	-		TX73_010095	0.85	+1.3
2,203,390	-		TX73_010095	0.85	+1.7
2,203,390	-		TX73_010095	0.85	+0.6
2,203,390	-		TX73_010095	0.85	+2.1
2,203,390	-		TX73_010095	0.85	+2.0
2,203,390	-		TX73_010095	0.85	+1.8
2,203,390	-		TX73_010095	0.85	-0.2
2,203,392	-		TX73_010095	0.86	-0.5
2,203,437	+				+2.0
2,203,437	+				-1.4
2,203,444	+				+1.7
2,203,445	-				+1.5
2,203,452	-				+0.0
2,203,452	-				+1.2
2,203,452	-				-0.9
2,203,477	+				-1.0
2,203,549	+				+1.8
2,203,557	-				+1.5
2,203,584	+				+0.9
2,203,602	+				-0.6
2,203,605	-				-1.8
2,203,627	-				+1.8
2,203,631	-				-0.6
2,203,666	+				-0.1
2,203,668	+				+0.0
2,203,673	+		TX73_010100	0.10	-1.7
2,203,681	-		TX73_010100	0.11	+1.4
2,203,683	+		TX73_010100	0.11	-2.7
2,203,683	+		TX73_010100	0.11	-0.6
2,203,683	+		TX73_010100	0.11	+1.7
2,203,683	+		TX73_010100	0.11	+1.8
2,203,684	+		TX73_010100	0.11	-1.2
2,203,691	-		TX73_010100	0.12	+0.7
2,203,691	-		TX73_010100	0.12	-0.5
2,203,691	-		TX73_010100	0.12	-1.7
2,203,692	-		TX73_010100	0.12	-1.0
2,203,692	-		TX73_010100	0.12	-0.2
2,203,692	-		TX73_010100	0.12	+0.4
2,203,717	-		TX73_010100	0.14	+2.4
2,203,719	+		TX73_010100	0.15	-0.4
2,203,732	-		TX73_010100	0.16	-1.6
2,203,737	-		TX73_010100	0.16	+1.1
2,203,780	+		TX73_010100	0.20	-1.0
2,203,785	-		TX73_010100	0.21	-0.2
2,203,787	-		TX73_010100	0.21	+0.8
2,203,796	+		TX73_010100	0.22	+2.1
2,203,806	-		TX73_010100	0.22	+0.6
2,203,809	+		TX73_010100	0.23	-1.3
2,203,809	+		TX73_010100	0.23	+1.8
2,203,823	+		TX73_010100	0.24	+0.0
2,203,835	+		TX73_010100	0.25	-0.6
2,203,843	-		TX73_010100	0.26	+0.3
2,203,871	+		TX73_010100	0.28	-1.1
2,203,879	-		TX73_010100	0.29	+1.1
2,203,882	+		TX73_010100	0.29	-0.7
2,203,890	-		TX73_010100	0.30	-0.3
2,203,900	+		TX73_010100	0.31	+1.1
2,203,900	+		TX73_010100	0.31	-2.1
2,203,900	-		TX73_010100	0.31	-0.6
2,203,908	-		TX73_010100	0.32	-1.5
2,203,908	-		TX73_010100	0.32	+1.3
2,203,941	-		TX73_010100	0.35	+0.8
2,203,998	+		TX73_010100	0.40	+0.7
2,204,008	+		TX73_010100	0.41	-0.8
2,204,016	-		TX73_010100	0.42	+0.3
2,204,028	-		TX73_010100	0.43	+0.6
2,204,035	-		TX73_010100	0.44	-0.1
2,204,035	-		TX73_010100	0.44	+0.7
2,204,049	+		TX73_010100	0.45	+0.4
2,204,059	+		TX73_010100	0.46	-2.4
2,204,064	+		TX73_010100	0.46	-1.2
2,204,064	+		TX73_010100	0.46	+1.8
2,204,066	+		TX73_010100	0.46	-2.7
2,204,072	-		TX73_010100	0.47	-0.2
2,204,072	-		TX73_010100	0.47	-2.6
2,204,072	-		TX73_010100	0.47	+3.7
2,204,072	-		TX73_010100	0.47	-2.5
2,204,072	-		TX73_010100	0.47	-2.6
2,204,077	-		TX73_010100	0.47	-0.5
2,204,097	+		TX73_010100	0.49	+1.3
2,204,160	-		TX73_010100	0.55	+0.9
2,204,160	-		TX73_010100	0.55	+0.9
2,204,188	+		TX73_010100	0.58	+1.0
2,204,196	-		TX73_010100	0.58	-0.1
2,204,198	-		TX73_010100	0.58	+0.7
2,204,198	-		TX73_010100	0.58	+1.3
2,204,207	-		TX73_010100	0.59	-1.5
2,204,251	-		TX73_010100	0.63	+0.1
2,204,264	-		TX73_010100	0.65	-0.2
2,204,279	+		TX73_010100	0.66	+1.3
2,204,279	+		TX73_010100	0.66	+1.8
2,204,283	-		TX73_010100	0.66	-0.6
2,204,376	+		TX73_010100	0.75	+2.9
2,204,404	+		TX73_010100	0.77	+1.3
2,204,407	-		TX73_010100	0.78	+0.5
2,204,438	-		TX73_010100	0.81	-2.0
2,204,438	-		TX73_010100	0.81	+0.6
2,204,460	-		TX73_010100	0.83	-1.2
2,204,460	-		TX73_010100	0.83	-0.5
2,204,460	-		TX73_010100	0.83	+1.7
2,204,462	+		TX73_010100	0.83	-0.4