Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004635

Experiment: NFM with pyruvate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with pyruvate
1,002,667	-		TX73_004630	0.45	+0.4
1,002,680	+		TX73_004630	0.46	-0.0
1,002,688	-		TX73_004630	0.46	-0.1
1,002,714	-		TX73_004630	0.48	-1.7
1,002,732	-		TX73_004630	0.50	-0.9
1,002,763	-		TX73_004630	0.52	-2.1
1,002,812	-		TX73_004630	0.55	-0.1
1,002,812	-		TX73_004630	0.55	+1.4
1,002,812	-		TX73_004630	0.55	+0.4
1,002,817	-		TX73_004630	0.56	-0.1
1,002,822	+		TX73_004630	0.56	-0.4
1,002,876	+		TX73_004630	0.60	+1.7
1,002,884	-		TX73_004630	0.61	-1.4
1,002,909	+		TX73_004630	0.62	+1.1
1,002,947	-		TX73_004630	0.65	-1.9
1,002,947	-		TX73_004630	0.65	-0.9
1,003,016	-		TX73_004630	0.70	+0.0
1,003,063	+		TX73_004630	0.74	-0.5
1,003,083	+		TX73_004630	0.75	+0.9
1,003,088	-		TX73_004630	0.75	+0.4
1,003,099	+		TX73_004630	0.76	+1.6
1,003,118	-		TX73_004630	0.77	+0.1
1,003,178	-		TX73_004630	0.82	-0.7
1,003,193	+		TX73_004630	0.83	+0.9
1,003,227	+		TX73_004630	0.85	-0.3
1,003,227	+		TX73_004630	0.85	-2.3
1,003,227	+		TX73_004630	0.85	+0.5
1,003,227	+		TX73_004630	0.85	-0.0
1,003,227	+		TX73_004630	0.85	-0.7
1,003,229	+		TX73_004630	0.85	+0.8
1,003,235	-		TX73_004630	0.86	-0.2
1,003,235	-		TX73_004630	0.86	+0.5
1,003,235	-		TX73_004630	0.86	+0.0
1,003,235	-		TX73_004630	0.86	-0.9
1,003,261	-		TX73_004630	0.88	+0.1
1,003,276	+		TX73_004630	0.89	+0.7
1,003,277	-		TX73_004630	0.89	+2.1
1,003,333	-				-0.4
1,003,333	-				-1.9
1,003,354	-				-0.2
1,003,385	-				+0.1
1,003,410	+				+1.0
1,003,440	+				+1.4
1,003,449	+				+0.2
1,003,452	-				+0.2
1,003,457	+				+0.3
1,003,457	-				+0.9
1,003,457	-				+0.2
1,003,521	+				+0.8
1,003,628	-				+1.0
1,003,644	+				-1.9
1,003,662	+				-1.6
1,003,675	+				+0.1
1,003,678	-				+1.0
1,003,683	-				-0.1
1,003,700	-		TX73_004635	0.11	+1.0
1,003,700	-		TX73_004635	0.11	-1.6
1,003,703	+		TX73_004635	0.12	-0.3
1,003,705	-		TX73_004635	0.12	+1.2
1,003,711	-		TX73_004635	0.13	+2.0
1,003,724	-		TX73_004635	0.15	+1.6
1,003,779	+		TX73_004635	0.24	+1.3
1,003,779	+		TX73_004635	0.24	-0.2
1,003,779	+		TX73_004635	0.24	+1.1
1,003,787	-		TX73_004635	0.25	+1.5
1,003,787	-		TX73_004635	0.25	+2.3
1,003,787	-		TX73_004635	0.25	+3.3
1,003,803	+		TX73_004635	0.28	-0.8
1,003,811	-		TX73_004635	0.29	+1.5
1,003,811	-		TX73_004635	0.29	+0.5
1,003,811	-		TX73_004635	0.29	-0.2
1,003,812	+		TX73_004635	0.29	-0.5
1,003,813	-		TX73_004635	0.29	+0.6
1,003,817	+		TX73_004635	0.30	-1.3
1,003,822	+		TX73_004635	0.31	+0.8
1,003,825	-		TX73_004635	0.31	+0.5
1,003,829	+		TX73_004635	0.32	-2.0
1,003,830	-		TX73_004635	0.32	+0.8
1,003,830	-		TX73_004635	0.32	+0.4
1,003,851	+		TX73_004635	0.35	-2.3
1,003,852	+		TX73_004635	0.35	-1.3
1,003,860	-		TX73_004635	0.37	+0.6
1,003,874	+		TX73_004635	0.39	-1.2
1,003,874	+		TX73_004635	0.39	-0.4
1,003,874	+		TX73_004635	0.39	+1.2
1,003,879	+		TX73_004635	0.40	-0.4
1,003,879	-		TX73_004635	0.40	-1.0
1,003,892	-		TX73_004635	0.42	-1.1
1,003,906	+		TX73_004635	0.44	-1.9
1,003,943	+		TX73_004635	0.50	+0.4
1,003,943	+		TX73_004635	0.50	-0.2
1,003,951	-		TX73_004635	0.51	-1.3
1,003,952	+		TX73_004635	0.51	-0.6
1,003,952	-		TX73_004635	0.51	-1.2
1,003,968	+		TX73_004635	0.54	+0.8
1,004,001	+		TX73_004635	0.59	+0.4
1,004,002	+		TX73_004635	0.59	+0.5
1,004,002	-		TX73_004635	0.59	-0.1
1,004,004	-		TX73_004635	0.59	+0.5
1,004,010	-		TX73_004635	0.60	-1.6
1,004,010	-		TX73_004635	0.60	+3.1
1,004,017	+		TX73_004635	0.61	-0.9
1,004,065	-		TX73_004635	0.69	-1.8
1,004,105	-		TX73_004635	0.75	-0.5
1,004,119	+		TX73_004635	0.78	-0.9
1,004,119	+		TX73_004635	0.78	-0.4
1,004,119	+		TX73_004635	0.78	-2.2
1,004,123	+		TX73_004635	0.78	+0.8
1,004,127	-		TX73_004635	0.79	-0.1
1,004,127	-		TX73_004635	0.79	+1.0
1,004,149	+		TX73_004635	0.82	+1.0
1,004,183	+		TX73_004635	0.88	+0.4
1,004,183	+		TX73_004635	0.88	-2.0
1,004,183	+		TX73_004635	0.88	-0.4
1,004,194	+		TX73_004635	0.89	+0.1
1,004,196	-		TX73_004635	0.90	+2.4
1,004,207	-				-2.0
1,004,251	-				+0.7
1,004,256	-				-1.0
1,004,262	-				+1.0
1,004,262	-				-0.3
1,004,273	+				+0.5
1,004,281	-				+0.1
1,004,281	-				-1.0
1,004,283	-				-0.1
1,004,308	+				+1.8
1,004,316	-				-0.8
1,004,318	+				+0.7
1,004,323	+				+1.7
1,004,323	+				+1.1
1,004,331	-				-0.0
1,004,339	+				+1.0
1,004,359	+		TX73_004640	0.11	+0.9
1,004,367	-		TX73_004640	0.12	-2.1
1,004,369	-		TX73_004640	0.12	-0.4
1,004,371	+		TX73_004640	0.12	+0.5
1,004,377	-		TX73_004640	0.13	-0.1
1,004,420	-		TX73_004640	0.19	-0.4
1,004,431	+		TX73_004640	0.20	-0.2
1,004,431	+		TX73_004640	0.20	-0.9
1,004,452	+		TX73_004640	0.23	-0.8
1,004,460	-		TX73_004640	0.24	-0.5
1,004,465	-		TX73_004640	0.25	+0.2
1,004,477	+		TX73_004640	0.27	+1.5
1,004,485	-		TX73_004640	0.28	-0.3
1,004,500	+		TX73_004640	0.30	-0.9
1,004,539	+		TX73_004640	0.35	+2.8
1,004,566	-		TX73_004640	0.38	+0.5
1,004,614	+		TX73_004640	0.45	-0.6
1,004,674	-		TX73_004640	0.53	-2.5
1,004,676	+		TX73_004640	0.53	-0.6
1,004,695	-		TX73_004640	0.56	+0.4
1,004,727	-		TX73_004640	0.60	+0.6
1,004,734	-		TX73_004640	0.61	-0.7
1,004,750	-		TX73_004640	0.63	+0.1
1,004,750	-		TX73_004640	0.63	-0.9
1,004,755	+		TX73_004640	0.63	+1.6
1,004,757	+		TX73_004640	0.64	-0.4
1,004,801	-		TX73_004640	0.70	+0.7
1,004,834	+		TX73_004640	0.74	-0.7
1,004,898	+		TX73_004640	0.82	-1.5
1,004,917	+		TX73_004640	0.85	-1.5
1,004,934	+		TX73_004640	0.87	+0.7
1,004,934	+		TX73_004640	0.87	+0.1
1,004,951	+		TX73_004640	0.90	+1.6
1,004,968	+				+1.0
1,004,976	-				-1.0
1,004,976	-				+0.8
1,005,004	-				+0.8
1,005,029	+				+1.2
1,005,037	-				+2.2
1,005,073	-				-1.0
1,005,075	+				+0.0
1,005,075	+				-2.0
1,005,075	+				+0.3
1,005,075	+				-1.1
1,005,075	+				+1.5
1,005,083	-				-2.5
1,005,083	-				+0.5
1,005,083	-				-0.6
1,005,083	-				+0.5
1,005,083	-				-0.7
1,005,083	-				+2.4
1,005,083	-				+0.0
1,005,102	+				-0.4
1,005,102	+				-1.0
1,005,110	-				+0.2
1,005,110	-				+1.2
1,005,113	-				-1.0
1,005,115	-				+2.0
1,005,117	+				+2.0
1,005,122	+		TX73_004645	0.10	-2.0
1,005,149	-		TX73_004645	0.17	-0.4
1,005,186	+		TX73_004645	0.25	-2.1
1,005,188	+		TX73_004645	0.26	+0.4
1,005,197	+		TX73_004645	0.28	+0.3
1,005,217	+		TX73_004645	0.32	-1.7
1,005,225	-		TX73_004645	0.34	+1.0