Experiment: NFM with pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004530 and TX73_004535 are separated by 204 nucleotides TX73_004535 and TX73_004540 are separated by 111 nucleotides
TX73_004530: TX73_004530 - KpsF/GutQ family sugar-phosphate isomerase, at 975,443 to 976,456
_004530
TX73_004535: TX73_004535 - outer membrane beta-barrel protein, at 976,661 to 978,376
_004535
TX73_004540: TX73_004540 - Na+-dependent transporter, at 978,488 to 979,504
_004540
Position (kb) 976
977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 976.439 kb on + strand at 976.458 kb on - strand at 976.458 kb on - strand at 976.458 kb on - strand at 976.503 kb on - strand at 976.503 kb on - strand at 976.524 kb on + strand at 976.537 kb on - strand at 976.549 kb on + strand at 976.552 kb on - strand at 976.570 kb on - strand at 976.658 kb on + strand at 976.666 kb on - strand at 976.668 kb on - strand at 976.671 kb on + strand at 976.679 kb on - strand at 976.703 kb on - strand at 976.733 kb on + strand at 976.738 kb on + strand at 976.740 kb on - strand at 976.773 kb on + strand at 976.781 kb on + strand at 976.783 kb on + strand at 976.814 kb on + strand at 976.814 kb on + strand at 976.820 kb on - strand at 976.822 kb on - strand at 976.822 kb on - strand at 976.823 kb on - strand at 976.836 kb on - strand, within TX73_004535 at 976.871 kb on + strand, within TX73_004535 at 976.881 kb on + strand, within TX73_004535 at 976.889 kb on + strand, within TX73_004535 at 976.891 kb on + strand, within TX73_004535 at 976.891 kb on + strand, within TX73_004535 at 976.897 kb on - strand, within TX73_004535 at 976.899 kb on - strand, within TX73_004535 at 976.940 kb on + strand, within TX73_004535 at 976.942 kb on + strand, within TX73_004535 at 976.949 kb on + strand, within TX73_004535 at 976.952 kb on + strand, within TX73_004535 at 976.952 kb on + strand, within TX73_004535 at 976.952 kb on + strand, within TX73_004535 at 976.960 kb on - strand, within TX73_004535 at 976.989 kb on + strand, within TX73_004535 at 977.061 kb on + strand, within TX73_004535 at 977.090 kb on - strand, within TX73_004535 at 977.116 kb on + strand, within TX73_004535 at 977.117 kb on + strand, within TX73_004535 at 977.124 kb on - strand, within TX73_004535 at 977.135 kb on - strand, within TX73_004535 at 977.174 kb on - strand, within TX73_004535 at 977.292 kb on - strand, within TX73_004535 at 977.299 kb on + strand, within TX73_004535 at 977.299 kb on + strand, within TX73_004535 at 977.325 kb on + strand, within TX73_004535 at 977.325 kb on + strand, within TX73_004535 at 977.333 kb on - strand, within TX73_004535 at 977.334 kb on - strand, within TX73_004535 at 977.345 kb on - strand, within TX73_004535 at 977.382 kb on + strand, within TX73_004535 at 977.383 kb on - strand, within TX73_004535 at 977.387 kb on + strand, within TX73_004535 at 977.462 kb on + strand, within TX73_004535 at 977.471 kb on - strand, within TX73_004535 at 977.472 kb on + strand, within TX73_004535 at 977.503 kb on + strand, within TX73_004535 at 977.525 kb on + strand, within TX73_004535 at 977.528 kb on - strand, within TX73_004535 at 977.533 kb on - strand, within TX73_004535 at 977.567 kb on - strand, within TX73_004535 at 977.589 kb on - strand, within TX73_004535 at 977.804 kb on - strand, within TX73_004535 at 977.963 kb on - strand, within TX73_004535 at 977.966 kb on - strand, within TX73_004535 at 977.971 kb on - strand, within TX73_004535 at 977.995 kb on + strand, within TX73_004535 at 978.025 kb on + strand, within TX73_004535 at 978.041 kb on + strand, within TX73_004535 at 978.041 kb on + strand, within TX73_004535 at 978.061 kb on - strand, within TX73_004535 at 978.066 kb on - strand, within TX73_004535 at 978.112 kb on - strand, within TX73_004535 at 978.129 kb on - strand, within TX73_004535 at 978.292 kb on - strand at 978.355 kb on - strand at 978.365 kb on + strand at 978.370 kb on + strand at 978.378 kb on - strand at 978.378 kb on - strand at 978.378 kb on - strand at 978.420 kb on - strand at 978.475 kb on + strand at 978.505 kb on + strand at 978.510 kb on + strand at 978.510 kb on + strand at 978.518 kb on - strand at 978.535 kb on + strand at 978.555 kb on + strand at 978.563 kb on - strand at 978.592 kb on + strand, within TX73_004540 at 978.615 kb on + strand, within TX73_004540 at 978.623 kb on - strand, within TX73_004540 at 978.689 kb on - strand, within TX73_004540 at 978.707 kb on - strand, within TX73_004540 at 978.709 kb on + strand, within TX73_004540 at 978.709 kb on + strand, within TX73_004540 at 978.709 kb on + strand, within TX73_004540 at 978.717 kb on - strand, within TX73_004540 at 978.717 kb on - strand, within TX73_004540 at 978.743 kb on + strand, within TX73_004540 at 978.794 kb on + strand, within TX73_004540 at 978.797 kb on - strand, within TX73_004540 at 978.797 kb on - strand, within TX73_004540 at 978.812 kb on - strand, within TX73_004540 at 978.915 kb on - strand, within TX73_004540 at 978.929 kb on + strand, within TX73_004540 at 978.932 kb on - strand, within TX73_004540 at 978.939 kb on + strand, within TX73_004540 at 979.008 kb on + strand, within TX73_004540 at 979.008 kb on + strand, within TX73_004540 at 979.016 kb on - strand, within TX73_004540 at 979.035 kb on - strand, within TX73_004540 at 979.169 kb on - strand, within TX73_004540 at 979.179 kb on - strand, within TX73_004540 at 979.228 kb on + strand, within TX73_004540 at 979.251 kb on + strand, within TX73_004540 at 979.270 kb on + strand, within TX73_004540 at 979.350 kb on + strand, within TX73_004540
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with pyruvate remove 976,439 + +2.4 976,458 - +1.5 976,458 - +0.5 976,458 - -1.2 976,503 - +0.3 976,503 - -1.2 976,524 + +0.8 976,537 - +1.2 976,549 + -2.4 976,552 - -1.8 976,570 - -1.7 976,658 + -0.2 976,666 - -0.9 976,668 - +1.3 976,671 + -0.7 976,679 - +0.4 976,703 - -0.7 976,733 + +0.4 976,738 + -0.6 976,740 - -1.3 976,773 + +1.3 976,781 + +0.9 976,783 + +1.0 976,814 + -2.4 976,814 + -0.8 976,820 - -1.9 976,822 - -1.3 976,822 - +1.4 976,823 - +0.1 976,836 - TX73_004535 0.10 +0.1 976,871 + TX73_004535 0.12 -1.5 976,881 + TX73_004535 0.13 -1.6 976,889 + TX73_004535 0.13 +0.0 976,891 + TX73_004535 0.13 +0.0 976,891 + TX73_004535 0.13 -2.6 976,897 - TX73_004535 0.14 +0.2 976,899 - TX73_004535 0.14 +0.9 976,940 + TX73_004535 0.16 -1.7 976,942 + TX73_004535 0.16 -0.7 976,949 + TX73_004535 0.17 +1.2 976,952 + TX73_004535 0.17 +0.7 976,952 + TX73_004535 0.17 +1.3 976,952 + TX73_004535 0.17 -0.7 976,960 - TX73_004535 0.17 +1.6 976,989 + TX73_004535 0.19 -0.8 977,061 + TX73_004535 0.23 -1.6 977,090 - TX73_004535 0.25 -2.4 977,116 + TX73_004535 0.27 -0.8 977,117 + TX73_004535 0.27 -1.2 977,124 - TX73_004535 0.27 +0.1 977,135 - TX73_004535 0.28 +0.1 977,174 - TX73_004535 0.30 -1.9 977,292 - TX73_004535 0.37 -0.7 977,299 + TX73_004535 0.37 +0.3 977,299 + TX73_004535 0.37 +0.1 977,325 + TX73_004535 0.39 -0.3 977,325 + TX73_004535 0.39 +1.8 977,333 - TX73_004535 0.39 +1.2 977,334 - TX73_004535 0.39 +0.5 977,345 - TX73_004535 0.40 +0.4 977,382 + TX73_004535 0.42 +0.3 977,383 - TX73_004535 0.42 +1.3 977,387 + TX73_004535 0.42 +0.1 977,462 + TX73_004535 0.47 +0.4 977,471 - TX73_004535 0.47 +0.2 977,472 + TX73_004535 0.47 -0.6 977,503 + TX73_004535 0.49 -1.4 977,525 + TX73_004535 0.50 +0.3 977,528 - TX73_004535 0.51 -0.0 977,533 - TX73_004535 0.51 +0.9 977,567 - TX73_004535 0.53 -0.2 977,589 - TX73_004535 0.54 +2.0 977,804 - TX73_004535 0.67 -0.6 977,963 - TX73_004535 0.76 -0.0 977,966 - TX73_004535 0.76 +1.9 977,971 - TX73_004535 0.76 +1.4 977,995 + TX73_004535 0.78 -1.5 978,025 + TX73_004535 0.79 -1.1 978,041 + TX73_004535 0.80 +0.7 978,041 + TX73_004535 0.80 -0.5 978,061 - TX73_004535 0.82 -2.6 978,066 - TX73_004535 0.82 -0.6 978,112 - TX73_004535 0.85 -2.6 978,129 - TX73_004535 0.86 +0.6 978,292 - -1.3 978,355 - +0.6 978,365 + +1.1 978,370 + -2.3 978,378 - -0.1 978,378 - -1.1 978,378 - +0.8 978,420 - +0.5 978,475 + -1.6 978,505 + -0.6 978,510 + +1.9 978,510 + +0.5 978,518 - +0.8 978,535 + +0.7 978,555 + +0.9 978,563 - -2.5 978,592 + TX73_004540 0.10 -1.0 978,615 + TX73_004540 0.12 +0.5 978,623 - TX73_004540 0.13 -0.7 978,689 - TX73_004540 0.20 -1.6 978,707 - TX73_004540 0.22 +0.0 978,709 + TX73_004540 0.22 +0.2 978,709 + TX73_004540 0.22 -1.3 978,709 + TX73_004540 0.22 +0.1 978,717 - TX73_004540 0.23 +0.7 978,717 - TX73_004540 0.23 +0.8 978,743 + TX73_004540 0.25 -1.7 978,794 + TX73_004540 0.30 -0.7 978,797 - TX73_004540 0.30 +0.3 978,797 - TX73_004540 0.30 -1.4 978,812 - TX73_004540 0.32 -0.9 978,915 - TX73_004540 0.42 -1.3 978,929 + TX73_004540 0.43 -1.6 978,932 - TX73_004540 0.44 +0.4 978,939 + TX73_004540 0.44 -1.2 979,008 + TX73_004540 0.51 -1.6 979,008 + TX73_004540 0.51 +0.1 979,016 - TX73_004540 0.52 -2.0 979,035 - TX73_004540 0.54 -0.9 979,169 - TX73_004540 0.67 +0.4 979,179 - TX73_004540 0.68 -1.7 979,228 + TX73_004540 0.73 +0.4 979,251 + TX73_004540 0.75 -0.2 979,270 + TX73_004540 0.77 +1.9 979,350 + TX73_004540 0.85 -2.1
Or see this region's nucleotide sequence