Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003965

Experiment: NFM with pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003960 and TX73_003965 are separated by 267 nucleotidesTX73_003965 and TX73_003970 are separated by 251 nucleotides TX73_003960: TX73_003960 - sensor domain-containing diguanylate cyclase, at 850,516 to 851,457 _003960 TX73_003965: TX73_003965 - IS481 family transposase, at 851,725 to 852,751 _003965 TX73_003970: TX73_003970 - hypothetical protein, at 853,003 to 853,824 _003970 Position (kb) 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 850.749 kb on - strand, within TX73_003960at 850.765 kb on - strand, within TX73_003960at 850.774 kb on + strand, within TX73_003960at 850.826 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.851 kb on + strand, within TX73_003960at 850.859 kb on - strand, within TX73_003960at 850.878 kb on - strand, within TX73_003960at 850.896 kb on + strand, within TX73_003960at 850.904 kb on - strand, within TX73_003960at 850.919 kb on - strand, within TX73_003960at 850.926 kb on + strand, within TX73_003960at 850.934 kb on - strand, within TX73_003960at 850.934 kb on - strand, within TX73_003960at 850.946 kb on - strand, within TX73_003960at 850.973 kb on - strand, within TX73_003960at 850.987 kb on - strand, within TX73_003960at 850.989 kb on + strand, within TX73_003960at 851.002 kb on - strand, within TX73_003960at 851.010 kb on - strand, within TX73_003960at 851.020 kb on + strand, within TX73_003960at 851.028 kb on - strand, within TX73_003960at 851.043 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.063 kb on + strand, within TX73_003960at 851.071 kb on - strand, within TX73_003960at 851.073 kb on + strand, within TX73_003960at 851.073 kb on + strand, within TX73_003960at 851.079 kb on - strand, within TX73_003960at 851.086 kb on - strand, within TX73_003960at 851.091 kb on - strand, within TX73_003960at 851.115 kb on + strand, within TX73_003960at 851.115 kb on + strand, within TX73_003960at 851.139 kb on - strand, within TX73_003960at 851.153 kb on + strand, within TX73_003960at 851.161 kb on - strand, within TX73_003960at 851.163 kb on + strand, within TX73_003960at 851.192 kb on + strand, within TX73_003960at 851.211 kb on + strand, within TX73_003960at 851.219 kb on - strand, within TX73_003960at 851.257 kb on + strand, within TX73_003960at 851.257 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.274 kb on + strand, within TX73_003960at 851.282 kb on - strand, within TX73_003960at 851.315 kb on + strand, within TX73_003960at 851.333 kb on + strand, within TX73_003960at 851.338 kb on + strand, within TX73_003960at 851.341 kb on - strand, within TX73_003960at 851.385 kb on + strandat 851.385 kb on + strandat 851.414 kb on + strandat 851.416 kb on - strandat 851.440 kb on - strandat 851.440 kb on - strandat 851.442 kb on + strandat 851.450 kb on - strandat 851.452 kb on + strandat 851.460 kb on - strandat 851.460 kb on - strandat 851.488 kb on - strandat 851.510 kb on - strandat 851.512 kb on + strandat 851.524 kb on + strandat 851.525 kb on + strandat 851.532 kb on - strandat 851.533 kb on - strandat 851.533 kb on - strandat 851.568 kb on - strandat 851.603 kb on - strandat 851.645 kb on - strandat 851.645 kb on - strandat 851.646 kb on - strandat 851.675 kb on + strandat 851.693 kb on + strandat 851.712 kb on + strandat 851.744 kb on - strandat 851.786 kb on - strandat 851.796 kb on + strandat 851.818 kb on + strandat 851.818 kb on + strandat 851.825 kb on - strandat 851.839 kb on + strand, within TX73_003965at 851.857 kb on - strand, within TX73_003965at 851.869 kb on - strand, within TX73_003965at 851.883 kb on - strand, within TX73_003965at 851.883 kb on - strand, within TX73_003965at 851.884 kb on - strand, within TX73_003965at 851.916 kb on - strand, within TX73_003965at 851.921 kb on + strand, within TX73_003965at 851.922 kb on + strand, within TX73_003965at 851.947 kb on + strand, within TX73_003965at 851.952 kb on + strand, within TX73_003965at 851.952 kb on - strand, within TX73_003965at 851.971 kb on + strand, within TX73_003965at 851.986 kb on - strand, within TX73_003965at 851.987 kb on - strand, within TX73_003965at 852.009 kb on + strand, within TX73_003965at 852.017 kb on - strand, within TX73_003965at 852.057 kb on + strand, within TX73_003965at 852.061 kb on + strand, within TX73_003965at 852.092 kb on - strand, within TX73_003965at 852.113 kb on - strand, within TX73_003965at 852.124 kb on + strand, within TX73_003965at 852.151 kb on + strand, within TX73_003965at 852.159 kb on - strand, within TX73_003965at 852.176 kb on - strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.208 kb on + strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.216 kb on - strand, within TX73_003965at 852.223 kb on - strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.252 kb on + strand, within TX73_003965at 852.260 kb on - strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.277 kb on + strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.285 kb on - strand, within TX73_003965at 852.319 kb on + strand, within TX73_003965at 852.386 kb on + strand, within TX73_003965at 852.394 kb on - strand, within TX73_003965at 852.420 kb on + strand, within TX73_003965at 852.439 kb on + strand, within TX73_003965at 852.447 kb on + strand, within TX73_003965at 852.447 kb on - strand, within TX73_003965at 852.467 kb on - strand, within TX73_003965at 852.469 kb on + strand, within TX73_003965at 852.469 kb on + strand, within TX73_003965at 852.470 kb on - strand, within TX73_003965at 852.477 kb on - strand, within TX73_003965at 852.484 kb on + strand, within TX73_003965at 852.492 kb on - strand, within TX73_003965at 852.528 kb on - strand, within TX73_003965at 852.532 kb on + strand, within TX73_003965at 852.540 kb on - strand, within TX73_003965at 852.540 kb on - strand, within TX73_003965at 852.559 kb on + strand, within TX73_003965at 852.559 kb on + strand, within TX73_003965at 852.577 kb on + strand, within TX73_003965at 852.578 kb on + strand, within TX73_003965at 852.587 kb on + strand, within TX73_003965at 852.609 kb on + strand, within TX73_003965at 852.629 kb on + strand, within TX73_003965at 852.629 kb on + strand, within TX73_003965at 852.637 kb on - strand, within TX73_003965at 852.644 kb on + strand, within TX73_003965at 852.669 kb on - strandat 852.680 kb on + strandat 852.685 kb on + strandat 852.694 kb on + strandat 852.740 kb on - strandat 852.765 kb on + strandat 852.793 kb on - strandat 852.812 kb on - strandat 852.815 kb on + strandat 852.840 kb on + strandat 852.854 kb on + strandat 852.862 kb on - strandat 852.897 kb on - strandat 852.980 kb on + strandat 852.988 kb on - strandat 852.988 kb on - strandat 852.990 kb on + strandat 852.996 kb on - strandat 853.008 kb on - strandat 853.035 kb on - strandat 853.158 kb on + strand, within TX73_003970at 853.286 kb on - strand, within TX73_003970at 853.348 kb on - strand, within TX73_003970at 853.410 kb on + strand, within TX73_003970at 853.415 kb on + strand, within TX73_003970at 853.551 kb on - strand, within TX73_003970at 853.571 kb on + strand, within TX73_003970at 853.578 kb on - strand, within TX73_003970at 853.663 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.670 kb on + strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.678 kb on - strand, within TX73_003970at 853.738 kb on + strand, within TX73_003970

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with pyruvate
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850,749 - TX73_003960 0.25 +1.7
850,765 - TX73_003960 0.26 -2.0
850,774 + TX73_003960 0.27 +1.6
850,826 + TX73_003960 0.33 +0.9
850,851 + TX73_003960 0.36 +0.6
850,851 + TX73_003960 0.36 +1.9
850,851 + TX73_003960 0.36 +0.8
850,859 - TX73_003960 0.36 +0.5
850,878 - TX73_003960 0.38 -0.1
850,896 + TX73_003960 0.40 -1.1
850,904 - TX73_003960 0.41 +1.7
850,919 - TX73_003960 0.43 -0.9
850,926 + TX73_003960 0.44 -1.6
850,934 - TX73_003960 0.44 +0.9
850,934 - TX73_003960 0.44 +0.6
850,946 - TX73_003960 0.46 +0.4
850,973 - TX73_003960 0.49 +0.8
850,987 - TX73_003960 0.50 -0.1
850,989 + TX73_003960 0.50 +0.3
851,002 - TX73_003960 0.52 -0.4
851,010 - TX73_003960 0.52 +0.0
851,020 + TX73_003960 0.54 +0.8
851,028 - TX73_003960 0.54 -1.9
851,043 + TX73_003960 0.56 +0.6
851,063 + TX73_003960 0.58 -0.7
851,063 + TX73_003960 0.58 -0.5
851,063 + TX73_003960 0.58 -0.7
851,071 - TX73_003960 0.59 -0.4
851,073 + TX73_003960 0.59 -2.2
851,073 + TX73_003960 0.59 +1.0
851,079 - TX73_003960 0.60 +0.1
851,086 - TX73_003960 0.61 +0.4
851,091 - TX73_003960 0.61 +1.0
851,115 + TX73_003960 0.64 +0.1
851,115 + TX73_003960 0.64 +1.2
851,139 - TX73_003960 0.66 -0.3
851,153 + TX73_003960 0.68 -2.2
851,161 - TX73_003960 0.68 +3.0
851,163 + TX73_003960 0.69 +0.3
851,192 + TX73_003960 0.72 -0.7
851,211 + TX73_003960 0.74 -0.1
851,219 - TX73_003960 0.75 +0.1
851,257 + TX73_003960 0.79 -1.6
851,257 + TX73_003960 0.79 -0.2
851,274 + TX73_003960 0.80 -0.3
851,274 + TX73_003960 0.80 -0.4
851,274 + TX73_003960 0.80 +1.1
851,282 - TX73_003960 0.81 -0.2
851,315 + TX73_003960 0.85 -1.0
851,333 + TX73_003960 0.87 -1.7
851,338 + TX73_003960 0.87 -2.9
851,341 - TX73_003960 0.88 +0.4
851,385 + +1.1
851,385 + +0.5
851,414 + +1.4
851,416 - -1.0
851,440 - -2.0
851,440 - +0.2
851,442 + +1.3
851,450 - +0.3
851,452 + +0.2
851,460 - +1.5
851,460 - +0.4
851,488 - +0.5
851,510 - -1.5
851,512 + -0.6
851,524 + +0.5
851,525 + -1.0
851,532 - -0.2
851,533 - +0.2
851,533 - -1.6
851,568 - -0.1
851,603 - +2.1
851,645 - +2.2
851,645 - +0.7
851,646 - -0.3
851,675 + +0.3
851,693 + +2.3
851,712 + +0.4
851,744 - -1.4
851,786 - -1.8
851,796 + -1.3
851,818 + -1.9
851,818 + -2.0
851,825 - +0.3
851,839 + TX73_003965 0.11 +0.6
851,857 - TX73_003965 0.13 +0.4
851,869 - TX73_003965 0.14 -1.0
851,883 - TX73_003965 0.15 +0.6
851,883 - TX73_003965 0.15 +0.8
851,884 - TX73_003965 0.15 +1.8
851,916 - TX73_003965 0.19 -0.0
851,921 + TX73_003965 0.19 +1.2
851,922 + TX73_003965 0.19 -1.7
851,947 + TX73_003965 0.22 +0.5
851,952 + TX73_003965 0.22 +0.1
851,952 - TX73_003965 0.22 +1.2
851,971 + TX73_003965 0.24 -1.3
851,986 - TX73_003965 0.25 -1.4
851,987 - TX73_003965 0.26 +0.2
852,009 + TX73_003965 0.28 +1.1
852,017 - TX73_003965 0.28 -2.3
852,057 + TX73_003965 0.32 +1.4
852,061 + TX73_003965 0.33 +1.4
852,092 - TX73_003965 0.36 -1.2
852,113 - TX73_003965 0.38 +0.5
852,124 + TX73_003965 0.39 -0.3
852,151 + TX73_003965 0.41 -0.9
852,159 - TX73_003965 0.42 -1.9
852,176 - TX73_003965 0.44 +1.4
852,208 + TX73_003965 0.47 +2.0
852,208 + TX73_003965 0.47 -0.1
852,208 + TX73_003965 0.47 +1.9
852,208 + TX73_003965 0.47 -0.2
852,208 + TX73_003965 0.47 -0.8
852,208 + TX73_003965 0.47 +1.8
852,208 + TX73_003965 0.47 +0.9
852,216 - TX73_003965 0.48 +0.3
852,216 - TX73_003965 0.48 +0.5
852,223 - TX73_003965 0.48 +0.3
852,252 + TX73_003965 0.51 -0.2
852,252 + TX73_003965 0.51 -0.7
852,260 - TX73_003965 0.52 +0.6
852,277 + TX73_003965 0.54 -0.7
852,277 + TX73_003965 0.54 +0.1
852,285 - TX73_003965 0.55 +0.2
852,285 - TX73_003965 0.55 +1.1
852,319 + TX73_003965 0.58 -1.7
852,386 + TX73_003965 0.64 +0.1
852,394 - TX73_003965 0.65 +0.0
852,420 + TX73_003965 0.68 -1.9
852,439 + TX73_003965 0.70 -1.3
852,447 + TX73_003965 0.70 +0.5
852,447 - TX73_003965 0.70 -0.8
852,467 - TX73_003965 0.72 -1.9
852,469 + TX73_003965 0.72 +1.0
852,469 + TX73_003965 0.72 -0.8
852,470 - TX73_003965 0.73 +1.5
852,477 - TX73_003965 0.73 +0.3
852,484 + TX73_003965 0.74 -0.1
852,492 - TX73_003965 0.75 -0.5
852,528 - TX73_003965 0.78 +1.6
852,532 + TX73_003965 0.79 -1.4
852,540 - TX73_003965 0.79 -1.5
852,540 - TX73_003965 0.79 +1.4
852,559 + TX73_003965 0.81 -0.5
852,559 + TX73_003965 0.81 -2.8
852,577 + TX73_003965 0.83 +0.4
852,578 + TX73_003965 0.83 -0.0
852,587 + TX73_003965 0.84 +0.1
852,609 + TX73_003965 0.86 -0.8
852,629 + TX73_003965 0.88 +0.1
852,629 + TX73_003965 0.88 +0.7
852,637 - TX73_003965 0.89 -2.2
852,644 + TX73_003965 0.89 -1.6
852,669 - -0.7
852,680 + -1.8
852,685 + +1.9
852,694 + -0.0
852,740 - -0.9
852,765 + +2.5
852,793 - -1.2
852,812 - -0.3
852,815 + -0.7
852,840 + +1.1
852,854 + -2.3
852,862 - -0.1
852,897 - -0.6
852,980 + -1.0
852,988 - -0.4
852,988 - +0.8
852,990 + +0.6
852,996 - +1.1
853,008 - +1.6
853,035 - +0.3
853,158 + TX73_003970 0.19 +0.1
853,286 - TX73_003970 0.34 +0.4
853,348 - TX73_003970 0.42 +1.2
853,410 + TX73_003970 0.50 -1.2
853,415 + TX73_003970 0.50 -0.4
853,551 - TX73_003970 0.67 +2.5
853,571 + TX73_003970 0.69 +0.3
853,578 - TX73_003970 0.70 -1.8
853,663 + TX73_003970 0.80 +1.0
853,670 + TX73_003970 0.81 -1.4
853,670 + TX73_003970 0.81 +1.5
853,678 - TX73_003970 0.82 +2.2
853,678 - TX73_003970 0.82 -1.2
853,678 - TX73_003970 0.82 +1.7
853,738 + TX73_003970 0.89 -2.0

Or see this region's nucleotide sequence